Wall clock time and date at job start Tue Mar 31 2020 17:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47391 * 2 1 4 4 C 1.52998 * 109.47082 * 240.00544 * 2 1 3 5 5 N 1.46504 * 109.47372 * 184.99933 * 4 2 1 6 6 C 1.36935 * 120.00193 * 179.97438 * 5 4 2 7 7 H 1.07999 * 120.00155 * 359.97438 * 6 5 4 8 8 C 1.38809 * 119.99967 * 179.97438 * 6 5 4 9 9 N 1.31620 * 120.00326 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00075 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47127 * 89.99977 * 10 8 6 12 12 H 1.48495 * 109.47244 * 210.00198 * 10 8 6 13 13 H 1.48504 * 109.47123 * 330.00310 * 10 8 6 14 14 N 1.46491 * 109.47523 * 120.00315 * 2 1 3 15 15 C 1.46501 * 120.00196 * 59.99976 * 14 2 1 16 16 C 1.34782 * 120.00133 * 240.00169 * 14 2 1 17 17 O 1.21583 * 119.99794 * 4.07846 * 16 14 2 18 18 C 1.47548 * 119.99899 * 184.07936 * 16 14 2 19 19 C 1.39908 * 120.31652 * 310.04163 * 18 16 14 20 20 C 1.37749 * 120.05349 * 179.97438 * 19 18 16 21 21 C 1.38633 * 120.43305 * 359.91880 * 20 19 18 22 22 C 1.38349 * 120.06245 * 0.02562 * 21 20 19 23 23 C 1.38771 * 120.14941 * 0.07154 * 22 21 20 24 24 O 1.36181 * 119.69483 * 179.80158 * 23 22 21 25 25 C 1.42924 * 115.91912 * 68.41354 * 24 23 22 26 26 C 1.52068 * 110.72065 * 275.57031 * 25 24 23 27 27 C 1.52064 * 112.36786 * 64.82952 * 26 25 24 28 28 O 1.36488 * 120.29691 * 180.02562 * 22 21 20 29 29 H 1.08996 * 109.46921 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46947 * 299.99530 * 1 2 3 31 31 H 1.08997 * 109.47445 * 59.99670 * 1 2 3 32 32 H 1.09004 * 109.46999 * 304.99659 * 4 2 1 33 33 H 1.09000 * 109.47601 * 64.99942 * 4 2 1 34 34 H 0.96996 * 119.99612 * 359.97438 * 5 4 2 35 35 H 0.96996 * 120.00197 * 179.97438 * 9 8 6 36 36 H 1.09002 * 109.47195 * 265.07732 * 15 14 2 37 37 H 1.09000 * 109.46936 * 25.07352 * 15 14 2 38 38 H 1.09004 * 109.47536 * 145.07083 * 15 14 2 39 39 H 1.07999 * 119.97660 * 359.97438 * 19 18 16 40 40 H 1.07997 * 119.78598 * 179.97438 * 20 19 18 41 41 H 1.08004 * 119.96977 * 180.02562 * 21 20 19 42 42 H 1.09002 * 109.22101 * 35.91769 * 25 24 23 43 43 H 1.09001 * 109.21736 * 155.30386 * 25 24 23 44 44 H 1.09005 * 108.94280 * 304.06320 * 26 25 24 45 45 H 1.09003 * 108.86963 * 185.55618 * 26 25 24 46 46 H 1.09002 * 109.21230 * 174.79409 * 27 26 25 47 47 H 1.09002 * 109.20858 * 55.42334 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.1838 -1.4386 -2.2069 7 1 3.6466 -1.8445 -3.0514 8 6 5.5672 -1.5378 -2.1516 9 7 6.2218 -1.0437 -1.1222 10 14 6.4999 -2.3738 -3.5375 11 1 6.8615 -1.3678 -4.5682 12 1 7.7356 -2.9958 -2.9979 13 1 5.6438 -3.4224 -4.1483 14 7 2.0184 -0.6906 1.1960 15 6 1.6645 -2.0932 1.4279 16 6 2.7933 -0.0356 2.0833 17 8 3.0259 1.1478 1.9298 18 6 3.3592 -0.7548 3.2406 19 6 2.5368 -1.5418 4.0541 20 6 3.0710 -2.2114 5.1329 21 6 4.4236 -2.1134 5.4206 22 6 5.2474 -1.3393 4.6231 23 6 4.7231 -0.6574 3.5341 24 8 5.5417 0.1052 2.7577 25 6 6.5044 -0.6070 1.9774 26 6 7.7480 -0.9067 2.7997 27 6 7.4625 -1.8498 3.9579 28 8 6.5799 -1.2398 4.9017 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.6054 -1.7197 -1.2953 33 1 1.7516 -0.1582 -2.1370 34 1 3.9824 -0.4621 -0.4321 35 1 7.1885 -1.1133 -1.0834 36 1 0.7871 -2.1448 2.0724 37 1 1.4442 -2.5746 0.4750 38 1 2.4990 -2.6039 1.9085 39 1 1.4823 -1.6245 3.8360 40 1 2.4321 -2.8173 5.7582 41 1 4.8346 -2.6419 6.2681 42 1 6.0658 -1.5442 1.6345 43 1 6.7830 -0.0038 1.1134 44 1 8.1445 0.0285 3.1953 45 1 8.4982 -1.3600 2.1518 46 1 8.3996 -2.1022 4.4543 47 1 7.0033 -2.7607 3.5739 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732449833.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:02 Heat of formation + Delta-G solvation = -56.849714 kcal Electronic energy + Delta-G solvation = -31194.730284 eV Core-core repulsion = 27151.237272 eV Total energy + Delta-G solvation = -4043.493012 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.84378 -39.46399 -37.29360 -37.14020 -36.15611 -33.99991 -32.67987 -32.08383 -30.58628 -29.80609 -28.98957 -26.64693 -26.19382 -25.65875 -24.05501 -22.56532 -21.87739 -21.62619 -20.69420 -19.03714 -18.03114 -17.23890 -17.07585 -16.76558 -16.32323 -15.60234 -15.31991 -15.12088 -14.95188 -14.61317 -14.55636 -13.86038 -13.69911 -13.58922 -13.42675 -13.18905 -12.99962 -12.81314 -12.43706 -12.27465 -12.21450 -12.08971 -12.04840 -11.81342 -11.55523 -11.42464 -10.94118 -10.88823 -10.78384 -10.50474 -10.45325 -10.08623 -10.06636 -9.77681 -9.68593 -9.32325 -8.89533 -8.71253 -8.36258 -8.19360 -6.91594 -5.78233 -3.05271 0.98973 1.20438 3.03059 3.21862 3.39787 3.45738 3.46189 3.59519 3.76576 4.12157 4.55623 4.68491 4.87506 4.95488 5.07114 5.15640 5.24082 5.31377 5.35299 5.42373 5.44390 5.45707 5.53266 5.54007 5.62338 5.70962 5.79453 5.88103 5.94534 5.95688 6.08522 6.11126 6.15229 6.19378 6.28372 6.33513 6.38975 6.39452 6.51462 6.55780 6.73733 6.74524 7.03776 7.36097 7.67154 7.76515 7.89786 8.40506 8.61194 9.52723 10.11165 10.47977 11.43522 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009279 B = 0.006062 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3016.929334 B = 4617.449243 C = 6795.471312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.126 3.874 3 H 0.100 0.900 4 C 0.143 3.857 5 N -0.727 5.727 6 C -0.234 4.234 7 H 0.068 0.932 8 C -0.011 4.011 9 N -0.927 5.927 10 Si 0.905 3.095 11 H -0.291 1.291 12 H -0.293 1.293 13 H -0.285 1.285 14 N -0.593 5.593 15 C 0.082 3.918 16 C 0.568 3.432 17 O -0.519 6.519 18 C -0.124 4.124 19 C -0.086 4.086 20 C -0.126 4.126 21 C -0.103 4.103 22 C 0.055 3.945 23 C 0.130 3.870 24 O -0.307 6.307 25 C 0.072 3.928 26 C -0.187 4.187 27 C 0.060 3.940 28 O -0.321 6.321 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.021 0.979 33 H 0.029 0.971 34 H 0.387 0.613 35 H 0.251 0.749 36 H 0.048 0.952 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.068 0.932 43 H 0.128 0.872 44 H 0.077 0.923 45 H 0.090 0.910 46 H 0.099 0.901 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.363 -5.260 12.327 14.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.023 3.977 3 H 0.118 0.882 4 C 0.014 3.986 5 N -0.372 5.372 6 C -0.365 4.365 7 H 0.086 0.914 8 C -0.207 4.207 9 N -0.577 5.577 10 Si 0.737 3.263 11 H -0.219 1.219 12 H -0.220 1.220 13 H -0.210 1.210 14 N -0.326 5.326 15 C -0.061 4.061 16 C 0.356 3.644 17 O -0.394 6.394 18 C -0.128 4.128 19 C -0.104 4.104 20 C -0.144 4.144 21 C -0.121 4.121 22 C 0.011 3.989 23 C 0.084 3.916 24 O -0.223 6.223 25 C -0.002 4.002 26 C -0.225 4.225 27 C -0.014 4.014 28 O -0.237 6.237 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.038 0.962 33 H 0.046 0.954 34 H 0.221 0.779 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.152 0.848 40 H 0.151 0.849 41 H 0.152 0.848 42 H 0.086 0.914 43 H 0.146 0.854 44 H 0.095 0.905 45 H 0.108 0.892 46 H 0.117 0.883 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.089 -4.423 12.187 14.324 hybrid contribution 0.904 -0.789 -0.804 1.444 sum -5.185 -5.211 11.383 13.551 Atomic orbital electron populations 1.22050 0.95119 1.02007 1.02068 1.21395 0.93317 0.98548 0.84444 0.88176 1.21018 0.87148 0.96734 0.93666 1.42312 0.99712 1.70008 1.25122 1.19216 0.89481 1.28830 0.98990 0.91430 1.24649 0.96284 1.01771 0.98010 1.69661 1.06674 1.51236 1.30097 0.86225 0.79415 0.78956 0.81737 1.21888 1.21962 1.21042 1.47562 1.50579 1.12126 1.22352 1.21804 0.99826 0.82166 1.02316 1.17921 0.77988 0.86581 0.81945 1.90791 1.58523 1.15151 1.74948 1.19973 0.93657 1.00841 0.98308 1.21268 0.99754 0.94915 0.94484 1.20879 0.94514 1.01067 0.97987 1.21160 0.93709 0.97074 1.00183 1.19085 0.85030 0.98763 0.96062 1.19195 0.89596 0.91796 0.91034 1.86406 1.46921 1.31504 1.57459 1.22822 0.86097 0.99333 0.91961 1.22521 1.00648 1.01300 0.97984 1.22687 0.93364 0.94908 0.90459 1.86334 1.12305 1.76907 1.48179 0.92428 0.92614 0.91435 0.96160 0.95359 0.77884 0.93926 0.93308 0.90437 0.91319 0.84760 0.84877 0.84838 0.91390 0.85424 0.90481 0.89202 0.88267 0.92480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.19 37.16 0.34 -1.65 16 2 C 0.13 2.20 2.79 -67.94 -0.19 2.01 16 3 H 0.10 2.02 6.91 -51.92 -0.36 1.66 16 4 C 0.14 2.85 5.52 -4.04 -0.02 2.83 16 5 N -0.73 -18.24 5.43 -59.91 -0.33 -18.57 16 6 C -0.23 -6.35 9.99 -15.06 -0.15 -6.50 16 7 H 0.07 1.80 7.83 -52.49 -0.41 1.38 16 8 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 9 N -0.93 -25.74 11.85 55.49 0.66 -25.08 16 10 Si 0.90 21.76 29.55 -169.99 -5.02 16.74 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 14 N -0.59 -10.21 2.24 -175.16 -0.39 -10.60 16 15 C 0.08 1.13 8.11 59.85 0.49 1.61 16 16 C 0.57 11.25 6.65 -12.46 -0.08 11.17 16 17 O -0.52 -12.28 15.93 -2.34 -0.04 -12.32 16 18 C -0.12 -2.17 4.85 -104.87 -0.51 -2.68 16 19 C -0.09 -1.11 7.83 -39.14 -0.31 -1.42 16 20 C -0.13 -1.40 10.02 -39.61 -0.40 -1.80 16 21 C -0.10 -1.30 9.99 -39.39 -0.39 -1.69 16 22 C 0.05 0.89 5.73 -39.34 -0.23 0.66 16 23 C 0.13 2.45 5.71 -38.78 -0.22 2.23 16 24 O -0.31 -6.59 9.26 -43.13 -0.40 -6.99 16 25 C 0.07 1.42 6.17 36.68 0.23 1.65 16 26 C -0.19 -2.89 5.92 -27.68 -0.16 -3.06 16 27 C 0.06 0.83 6.51 36.68 0.24 1.07 16 28 O -0.32 -5.13 10.16 -36.80 -0.37 -5.51 16 29 H 0.06 0.66 7.67 -51.93 -0.40 0.26 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.02 0.39 6.86 -51.93 -0.36 0.04 16 33 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.39 10.55 7.06 -40.82 -0.29 10.26 16 35 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 36 H 0.05 0.51 7.11 -51.93 -0.37 0.14 16 37 H 0.08 1.08 6.53 -51.93 -0.34 0.74 16 38 H 0.07 0.98 6.33 -51.93 -0.33 0.65 16 39 H 0.13 1.41 6.43 -52.49 -0.34 1.07 16 40 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.13 1.34 8.06 -52.48 -0.42 0.91 16 42 H 0.07 1.46 7.93 -51.93 -0.41 1.05 16 43 H 0.13 2.84 7.28 -51.93 -0.38 2.47 16 44 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 46 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.06 0.77 7.93 -51.93 -0.41 0.36 16 LS Contribution 375.40 15.07 5.66 5.66 Total: -1.00 -32.77 375.40 -8.61 -41.38 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -6.91 Total: 11.27 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -1.47 Total: 4.02 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: -0.06 Total: -54.25 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.81 Total: -24.82 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.77 -8.61 -41.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732449833.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.468 kcal (2) G-P(sol) polarization free energy of solvation -32.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds