Wall clock time and date at job start Tue Mar 31 2020 17:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47391 * 2 1 4 4 C 1.52998 * 109.47082 * 240.00544 * 2 1 3 5 5 N 1.46504 * 109.47372 * 184.99933 * 4 2 1 6 6 C 1.36935 * 120.00193 * 179.97438 * 5 4 2 7 7 H 1.07999 * 120.00155 * 359.97438 * 6 5 4 8 8 C 1.38809 * 119.99967 * 179.97438 * 6 5 4 9 9 N 1.31620 * 120.00326 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00075 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47127 * 89.99977 * 10 8 6 12 12 H 1.48495 * 109.47244 * 210.00198 * 10 8 6 13 13 H 1.48504 * 109.47123 * 330.00310 * 10 8 6 14 14 N 1.46491 * 109.47523 * 120.00315 * 2 1 3 15 15 C 1.46501 * 120.00196 * 59.99976 * 14 2 1 16 16 C 1.34782 * 120.00133 * 240.00169 * 14 2 1 17 17 O 1.21583 * 119.99794 * 4.07846 * 16 14 2 18 18 C 1.47548 * 119.99899 * 184.07936 * 16 14 2 19 19 C 1.39908 * 120.31652 * 310.04163 * 18 16 14 20 20 C 1.37749 * 120.05349 * 179.97438 * 19 18 16 21 21 C 1.38633 * 120.43305 * 359.91880 * 20 19 18 22 22 C 1.38349 * 120.06245 * 0.02562 * 21 20 19 23 23 C 1.38771 * 120.14941 * 0.07154 * 22 21 20 24 24 O 1.36181 * 119.69483 * 179.80158 * 23 22 21 25 25 C 1.42924 * 115.91912 * 68.41354 * 24 23 22 26 26 C 1.52068 * 110.72065 * 275.57031 * 25 24 23 27 27 C 1.52064 * 112.36786 * 64.82952 * 26 25 24 28 28 O 1.36488 * 120.29691 * 180.02562 * 22 21 20 29 29 H 1.08996 * 109.46921 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46947 * 299.99530 * 1 2 3 31 31 H 1.08997 * 109.47445 * 59.99670 * 1 2 3 32 32 H 1.09004 * 109.46999 * 304.99659 * 4 2 1 33 33 H 1.09000 * 109.47601 * 64.99942 * 4 2 1 34 34 H 0.96996 * 119.99612 * 359.97438 * 5 4 2 35 35 H 0.96996 * 120.00197 * 179.97438 * 9 8 6 36 36 H 1.09002 * 109.47195 * 265.07732 * 15 14 2 37 37 H 1.09000 * 109.46936 * 25.07352 * 15 14 2 38 38 H 1.09004 * 109.47536 * 145.07083 * 15 14 2 39 39 H 1.07999 * 119.97660 * 359.97438 * 19 18 16 40 40 H 1.07997 * 119.78598 * 179.97438 * 20 19 18 41 41 H 1.08004 * 119.96977 * 180.02562 * 21 20 19 42 42 H 1.09002 * 109.22101 * 35.91769 * 25 24 23 43 43 H 1.09001 * 109.21736 * 155.30386 * 25 24 23 44 44 H 1.09005 * 108.94280 * 304.06320 * 26 25 24 45 45 H 1.09003 * 108.86963 * 185.55618 * 26 25 24 46 46 H 1.09002 * 109.21230 * 174.79409 * 27 26 25 47 47 H 1.09002 * 109.20858 * 55.42334 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.1838 -1.4386 -2.2069 7 1 3.6466 -1.8445 -3.0514 8 6 5.5672 -1.5378 -2.1516 9 7 6.2218 -1.0437 -1.1222 10 14 6.4999 -2.3738 -3.5375 11 1 6.8615 -1.3678 -4.5682 12 1 7.7356 -2.9958 -2.9979 13 1 5.6438 -3.4224 -4.1483 14 7 2.0184 -0.6906 1.1960 15 6 1.6645 -2.0932 1.4279 16 6 2.7933 -0.0356 2.0833 17 8 3.0259 1.1478 1.9298 18 6 3.3592 -0.7548 3.2406 19 6 2.5368 -1.5418 4.0541 20 6 3.0710 -2.2114 5.1329 21 6 4.4236 -2.1134 5.4206 22 6 5.2474 -1.3393 4.6231 23 6 4.7231 -0.6574 3.5341 24 8 5.5417 0.1052 2.7577 25 6 6.5044 -0.6070 1.9774 26 6 7.7480 -0.9067 2.7997 27 6 7.4625 -1.8498 3.9579 28 8 6.5799 -1.2398 4.9017 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.6054 -1.7197 -1.2953 33 1 1.7516 -0.1582 -2.1370 34 1 3.9824 -0.4621 -0.4321 35 1 7.1885 -1.1133 -1.0834 36 1 0.7871 -2.1448 2.0724 37 1 1.4442 -2.5746 0.4750 38 1 2.4990 -2.6039 1.9085 39 1 1.4823 -1.6245 3.8360 40 1 2.4321 -2.8173 5.7582 41 1 4.8346 -2.6419 6.2681 42 1 6.0658 -1.5442 1.6345 43 1 6.7830 -0.0038 1.1134 44 1 8.1445 0.0285 3.1953 45 1 8.4982 -1.3600 2.1518 46 1 8.3996 -2.1022 4.4543 47 1 7.0033 -2.7607 3.5739 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732449833.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:01 Heat of formation + Delta-G solvation = -78.371473 kcal Electronic energy + Delta-G solvation = -31195.663538 eV Core-core repulsion = 27151.237272 eV Total energy + Delta-G solvation = -4044.426265 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.09959 -40.84617 -38.51013 -38.45445 -37.70299 -35.80516 -34.02277 -33.54600 -32.20352 -31.15647 -30.15562 -27.86723 -27.51230 -27.35510 -25.32105 -24.36770 -23.07025 -22.91454 -22.05218 -20.41916 -19.36266 -19.06041 -18.49624 -18.02734 -17.68624 -16.97474 -16.63037 -16.56831 -16.33229 -16.10193 -15.87611 -15.33446 -15.15529 -15.10104 -14.95266 -14.68683 -14.20302 -14.06413 -13.88602 -13.66202 -13.38634 -13.37419 -13.24920 -13.08289 -12.91233 -12.81802 -12.66888 -12.49669 -12.14003 -12.11925 -11.87971 -11.80509 -11.72589 -11.35337 -11.17769 -10.93903 -10.68916 -9.87860 -9.59273 -9.49011 -8.94598 -7.86697 -5.16980 -0.14606 0.08495 1.45478 1.47803 1.54554 1.62742 2.01871 2.39075 2.52602 2.56602 2.91945 3.42997 3.44813 3.73084 3.78086 3.87279 3.96721 4.07741 4.15208 4.19708 4.25534 4.29496 4.31568 4.34225 4.41025 4.43253 4.47786 4.62596 4.70447 4.78461 4.80584 4.84966 4.93618 4.98997 5.02119 5.08740 5.13945 5.14170 5.22870 5.28725 5.32107 5.51729 5.60110 5.67918 6.14870 6.30990 6.40330 6.56729 7.17632 7.37800 8.10836 8.36796 9.33694 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009279 B = 0.006062 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3016.929334 B = 4617.449243 C = 6795.471312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.129 3.871 3 H 0.061 0.939 4 C 0.142 3.858 5 N -0.741 5.741 6 C -0.249 4.249 7 H 0.072 0.928 8 C -0.065 4.065 9 N -0.947 5.947 10 Si 0.968 3.032 11 H -0.296 1.296 12 H -0.294 1.294 13 H -0.273 1.273 14 N -0.589 5.589 15 C 0.077 3.923 16 C 0.559 3.441 17 O -0.578 6.578 18 C -0.151 4.151 19 C -0.076 4.076 20 C -0.102 4.102 21 C -0.091 4.091 22 C 0.038 3.962 23 C 0.084 3.916 24 O -0.342 6.342 25 C 0.085 3.915 26 C -0.179 4.179 27 C 0.062 3.938 28 O -0.331 6.331 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.039 0.961 33 H 0.029 0.971 34 H 0.371 0.629 35 H 0.248 0.752 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.166 0.834 40 H 0.187 0.813 41 H 0.169 0.831 42 H 0.040 0.960 43 H 0.087 0.913 44 H 0.074 0.926 45 H 0.104 0.896 46 H 0.138 0.862 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.352 -8.419 14.337 18.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.025 3.975 3 H 0.079 0.921 4 C 0.015 3.985 5 N -0.384 5.384 6 C -0.380 4.380 7 H 0.090 0.910 8 C -0.258 4.258 9 N -0.597 5.597 10 Si 0.798 3.202 11 H -0.224 1.224 12 H -0.221 1.221 13 H -0.198 1.198 14 N -0.321 5.321 15 C -0.064 4.064 16 C 0.348 3.652 17 O -0.459 6.459 18 C -0.155 4.155 19 C -0.095 4.095 20 C -0.119 4.119 21 C -0.110 4.110 22 C -0.006 4.006 23 C 0.039 3.961 24 O -0.259 6.259 25 C 0.011 3.989 26 C -0.217 4.217 27 C -0.012 4.012 28 O -0.248 6.248 29 H 0.100 0.900 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.057 0.943 33 H 0.046 0.954 34 H 0.203 0.797 35 H 0.057 0.943 36 H 0.114 0.886 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.183 0.817 40 H 0.205 0.795 41 H 0.186 0.814 42 H 0.058 0.942 43 H 0.105 0.895 44 H 0.093 0.907 45 H 0.122 0.878 46 H 0.155 0.845 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.138 -7.630 14.182 18.044 hybrid contribution 1.440 0.178 -1.421 2.031 sum -6.698 -7.452 12.761 16.224 Atomic orbital electron populations 1.21955 0.90837 1.03891 1.03129 1.21314 0.96392 0.96131 0.83661 0.92065 1.21203 0.84464 0.97846 0.95026 1.42498 1.01831 1.69866 1.24178 1.19535 0.90055 1.28909 0.99542 0.90962 1.25440 0.97249 1.02883 1.00253 1.69849 1.06525 1.51922 1.31355 0.85233 0.78051 0.77958 0.78916 1.22356 1.22103 1.19797 1.47681 1.49633 1.13391 1.21357 1.22065 1.01361 0.79748 1.03260 1.18459 0.77577 0.86175 0.82938 1.90738 1.60655 1.17789 1.76677 1.20065 0.93875 1.02655 0.98856 1.21654 1.00633 0.93247 0.93928 1.21478 0.94287 0.99383 0.96800 1.21632 0.94022 0.95465 0.99836 1.19374 0.85565 0.99532 0.96142 1.19642 0.90035 0.94031 0.92383 1.86327 1.47919 1.33360 1.58315 1.22460 0.87741 0.96726 0.91978 1.22453 0.98536 1.02071 0.98634 1.22827 0.94651 0.93890 0.89802 1.86307 1.12623 1.77512 1.48367 0.89990 0.91809 0.90197 0.94291 0.95364 0.79743 0.94300 0.88601 0.90515 0.91981 0.81706 0.79549 0.81367 0.94187 0.89456 0.90712 0.87757 0.84477 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 9.19 71.98 0.66 -2.68 16 2 C 0.13 4.56 2.79 44.99 0.13 4.69 16 3 H 0.06 2.65 6.91 -2.38 -0.02 2.64 16 4 C 0.14 5.73 5.52 86.38 0.48 6.21 16 5 N -0.74 -38.79 5.43 -343.45 -1.87 -40.66 16 6 C -0.25 -13.87 9.99 84.03 0.84 -13.03 16 7 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 8 C -0.06 -3.65 5.50 84.86 0.47 -3.19 16 9 N -0.95 -55.48 11.85 21.65 0.26 -55.23 16 10 Si 0.97 45.75 29.55 68.60 2.03 47.77 16 11 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 12 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 13 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 14 N -0.59 -20.45 2.24 -826.34 -1.85 -22.30 16 15 C 0.08 1.96 8.11 127.77 1.04 3.00 16 16 C 0.56 23.26 6.65 86.70 0.58 23.83 16 17 O -0.58 -29.81 15.93 3.32 0.05 -29.75 16 18 C -0.15 -5.37 4.85 -20.03 -0.10 -5.47 16 19 C -0.08 -1.75 7.83 22.56 0.18 -1.58 16 20 C -0.10 -1.75 10.02 22.25 0.22 -1.53 16 21 C -0.09 -1.97 9.99 22.39 0.22 -1.75 16 22 C 0.04 1.20 5.73 22.42 0.13 1.33 16 23 C 0.08 3.33 5.71 22.79 0.13 3.46 16 24 O -0.34 -16.10 9.26 -73.81 -0.68 -16.79 16 25 C 0.09 3.72 6.17 71.67 0.44 4.16 16 26 C -0.18 -5.85 5.92 29.98 0.18 -5.67 16 27 C 0.06 1.69 6.51 71.67 0.47 2.15 16 28 O -0.33 -10.40 10.16 -84.37 -0.86 -11.26 16 29 H 0.08 1.58 7.67 -2.39 -0.02 1.56 16 30 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.04 1.45 6.86 -2.39 -0.02 1.43 16 33 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.37 21.65 7.06 -92.71 -0.65 21.00 16 35 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 36 H 0.10 1.55 7.11 -2.39 -0.02 1.53 16 37 H 0.08 1.96 6.53 -2.39 -0.02 1.95 16 38 H 0.06 1.68 6.33 -2.38 -0.02 1.66 16 39 H 0.17 2.67 6.43 -2.91 -0.02 2.65 16 40 H 0.19 1.34 8.06 -2.91 -0.02 1.32 16 41 H 0.17 2.47 8.06 -2.91 -0.02 2.44 16 42 H 0.04 1.89 7.93 -2.39 -0.02 1.87 16 43 H 0.09 4.39 7.28 -2.39 -0.02 4.37 16 44 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 45 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 46 H 0.14 2.63 8.14 -2.39 -0.02 2.62 16 47 H 0.06 1.56 7.93 -2.39 -0.02 1.54 16 Total: -1.00 -80.42 375.40 3.47 -76.95 By element: Atomic # 1 Polarization: 36.97 SS G_CDS: 0.34 Total: 37.31 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: 6.05 Total: 13.96 kcal Atomic # 7 Polarization: -114.72 SS G_CDS: -3.46 Total: -118.19 kcal Atomic # 8 Polarization: -56.31 SS G_CDS: -1.49 Total: -57.80 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.77 kcal Total: -80.42 3.47 -76.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732449833.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.421 kcal (2) G-P(sol) polarization free energy of solvation -80.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds