Wall clock time and date at job start Tue Mar 31 2020 17:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47178 * 2 1 4 4 C 1.52997 * 109.47162 * 120.00347 * 2 1 3 5 5 N 1.46501 * 109.47053 * 175.00066 * 4 2 1 6 6 C 1.36942 * 120.00060 * 179.97438 * 5 4 2 7 7 H 1.07995 * 119.99673 * 0.02562 * 6 5 4 8 8 C 1.38805 * 119.99933 * 179.97438 * 6 5 4 9 9 N 1.31624 * 120.00305 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 120.00114 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.46888 * 89.99747 * 10 8 6 12 12 H 1.48494 * 109.47009 * 210.00223 * 10 8 6 13 13 H 1.48497 * 109.46626 * 329.99761 * 10 8 6 14 14 N 1.46498 * 109.46917 * 240.00028 * 2 1 3 15 15 C 1.46501 * 120.00335 * 299.99845 * 14 2 1 16 16 C 1.34781 * 120.00365 * 120.00186 * 14 2 1 17 17 O 1.21584 * 119.99307 * 4.43638 * 16 14 2 18 18 C 1.47538 * 120.00558 * 184.44453 * 16 14 2 19 19 C 1.39918 * 120.31285 * 310.87119 * 18 16 14 20 20 C 1.37748 * 120.05192 * 179.97438 * 19 18 16 21 21 C 1.38630 * 120.43766 * 359.92308 * 20 19 18 22 22 C 1.38355 * 120.05930 * 0.02562 * 21 20 19 23 23 C 1.38775 * 120.15096 * 0.07773 * 22 21 20 24 24 O 1.36174 * 119.69844 * 179.79973 * 23 22 21 25 25 C 1.42924 * 115.92206 * 68.40823 * 24 23 22 26 26 C 1.52069 * 110.72305 * 275.57472 * 25 24 23 27 27 C 1.52064 * 112.36605 * 64.82920 * 26 25 24 28 28 O 1.36491 * 120.29648 * 180.02562 * 22 21 20 29 29 H 1.09000 * 109.47458 * 60.00437 * 1 2 3 30 30 H 1.09005 * 109.46870 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47290 * 299.99859 * 1 2 3 32 32 H 1.09001 * 109.46862 * 294.99706 * 4 2 1 33 33 H 1.08994 * 109.47757 * 55.00012 * 4 2 1 34 34 H 0.97000 * 120.00256 * 359.97438 * 5 4 2 35 35 H 0.96999 * 120.00212 * 180.02562 * 9 8 6 36 36 H 1.09002 * 109.47195 * 273.14303 * 15 14 2 37 37 H 1.09000 * 109.46936 * 33.13922 * 15 14 2 38 38 H 1.09004 * 109.47536 * 153.13653 * 15 14 2 39 39 H 1.07996 * 119.97256 * 359.97438 * 19 18 16 40 40 H 1.08004 * 119.78127 * 179.97438 * 20 19 18 41 41 H 1.08002 * 119.97359 * 180.02562 * 21 20 19 42 42 H 1.09002 * 109.21731 * 35.92278 * 25 24 23 43 43 H 1.09003 * 109.21991 * 155.30481 * 25 24 23 44 44 H 1.09002 * 108.94084 * 304.06067 * 26 25 24 45 45 H 1.09001 * 108.86876 * 185.54925 * 26 25 24 46 46 H 1.09006 * 109.21567 * 174.79247 * 27 26 25 47 47 H 1.09005 * 109.21497 * 55.42176 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8264 1.1905 6 6 4.1839 -1.4380 2.2071 7 1 3.6469 -1.8432 3.0519 8 6 5.5672 -1.5380 2.1512 9 7 6.2217 -1.0446 1.1213 10 14 6.5001 -2.3730 3.5377 11 1 6.6317 -3.8225 3.2431 12 1 7.8507 -1.7681 3.6601 13 1 5.7594 -2.1920 4.8119 14 7 2.0182 -0.6906 -1.1962 15 6 1.6644 -2.0932 -1.4281 16 6 2.7931 -0.0357 -2.0834 17 8 3.1535 1.1022 -1.8520 18 6 3.2039 -0.6994 -3.3354 19 6 3.7500 -1.9872 -3.3058 20 6 4.1312 -2.6020 -4.4780 21 6 3.9764 -1.9538 -5.6936 22 6 3.4366 -0.6806 -5.7362 23 6 3.0500 -0.0478 -4.5632 24 8 2.5235 1.2070 -4.6155 25 6 1.2336 1.3186 -5.2208 26 6 1.3562 1.4274 -6.7326 27 6 1.9338 0.1677 -7.3585 28 8 3.2815 -0.0381 -6.9304 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.7516 -0.1584 2.1369 33 1 1.6054 -1.7198 1.2951 34 1 3.9824 -0.4628 0.4315 35 1 7.1884 -1.1149 1.0821 36 1 2.3849 -2.7378 -0.9246 37 1 0.6667 -2.2861 -1.0338 38 1 1.6781 -2.2993 -2.4983 39 1 3.8729 -2.4996 -2.3630 40 1 4.5527 -3.5960 -4.4500 41 1 4.2774 -2.4431 -6.6082 42 1 0.6425 0.4376 -4.9706 43 1 0.7329 2.2075 -4.8370 44 1 2.0027 2.2708 -6.9754 45 1 0.3677 1.6099 -7.1542 46 1 1.9130 0.2644 -8.4441 47 1 1.3287 -0.6895 -7.0632 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732449836.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:05 Heat of formation + Delta-G solvation = -54.279822 kcal Electronic energy + Delta-G solvation = -30397.029006 eV Core-core repulsion = 26353.647433 eV Total energy + Delta-G solvation = -4043.381573 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.10919 -39.57270 -37.58658 -37.43014 -36.15969 -33.98349 -33.09619 -32.16517 -30.60968 -29.84151 -29.18114 -26.74388 -26.67603 -25.60754 -24.13719 -22.56521 -22.09282 -22.04430 -20.84684 -19.13680 -18.30207 -17.49118 -17.08568 -16.92257 -16.41522 -15.70797 -15.61296 -15.49046 -15.10083 -14.73393 -14.55024 -14.21911 -14.06463 -13.63826 -13.58032 -13.38801 -13.17036 -12.95604 -12.41366 -12.33049 -12.27706 -12.25709 -12.09923 -11.88239 -11.63960 -11.43881 -11.26374 -11.09960 -10.81238 -10.75068 -10.57475 -10.42324 -10.17262 -10.01300 -9.65372 -9.40317 -8.83494 -8.79914 -8.55143 -8.19009 -6.85361 -5.68185 -2.98230 0.88674 1.04507 3.00349 3.18212 3.37112 3.42049 3.46065 3.51291 3.53768 3.78984 4.39520 4.46956 4.61029 4.66834 4.85081 4.93007 4.97226 5.04589 5.11767 5.22508 5.24187 5.27570 5.35699 5.37281 5.42741 5.53149 5.57579 5.61916 5.64112 5.72677 5.76266 5.97384 6.06593 6.10583 6.13396 6.18769 6.21542 6.31700 6.40717 6.47327 6.52401 6.77183 6.99632 7.05265 7.47967 7.73882 7.76343 8.48822 8.60264 9.60239 10.19447 10.54932 11.53527 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015230 B = 0.003665 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.010466 B = 7637.875445 C = 8624.310631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.127 3.873 3 H 0.100 0.900 4 C 0.145 3.855 5 N -0.728 5.728 6 C -0.242 4.242 7 H 0.069 0.931 8 C -0.012 4.012 9 N -0.927 5.927 10 Si 0.905 3.095 11 H -0.291 1.291 12 H -0.292 1.292 13 H -0.283 1.283 14 N -0.593 5.593 15 C 0.075 3.925 16 C 0.565 3.435 17 O -0.513 6.513 18 C -0.116 4.116 19 C -0.073 4.073 20 C -0.117 4.117 21 C -0.101 4.101 22 C 0.053 3.947 23 C 0.110 3.890 24 O -0.301 6.301 25 C 0.059 3.941 26 C -0.187 4.187 27 C 0.060 3.940 28 O -0.317 6.317 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.027 0.973 33 H 0.020 0.980 34 H 0.387 0.613 35 H 0.255 0.745 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.146 0.854 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.055 0.945 43 H 0.104 0.896 44 H 0.084 0.916 45 H 0.089 0.911 46 H 0.103 0.897 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.002 -2.545 -17.943 23.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.023 3.977 3 H 0.118 0.882 4 C 0.016 3.984 5 N -0.373 5.373 6 C -0.373 4.373 7 H 0.087 0.913 8 C -0.208 4.208 9 N -0.575 5.575 10 Si 0.736 3.264 11 H -0.218 1.218 12 H -0.218 1.218 13 H -0.209 1.209 14 N -0.326 5.326 15 C -0.068 4.068 16 C 0.352 3.648 17 O -0.388 6.388 18 C -0.120 4.120 19 C -0.091 4.091 20 C -0.135 4.135 21 C -0.120 4.120 22 C 0.009 3.991 23 C 0.065 3.935 24 O -0.217 6.217 25 C -0.016 4.016 26 C -0.225 4.225 27 C -0.015 4.015 28 O -0.233 6.233 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.045 0.955 33 H 0.038 0.962 34 H 0.222 0.778 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.164 0.836 40 H 0.156 0.844 41 H 0.154 0.846 42 H 0.073 0.927 43 H 0.122 0.878 44 H 0.103 0.897 45 H 0.107 0.893 46 H 0.121 0.879 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.564 -1.743 -17.708 22.994 hybrid contribution 0.560 -0.561 0.527 0.952 sum -14.004 -2.304 -17.181 22.284 Atomic orbital electron populations 1.22059 0.95252 1.01991 1.02019 1.21391 0.93113 0.98588 0.84559 0.88164 1.20986 0.87190 0.96679 0.93512 1.42322 0.99667 1.70129 1.25170 1.19195 0.89427 1.29478 0.99190 0.91341 1.24746 0.96436 1.01656 0.97982 1.69697 1.07159 1.50536 1.30125 0.86231 0.79534 0.78932 0.81720 1.21838 1.21814 1.20853 1.47542 1.50683 1.12141 1.22282 1.21918 1.01274 0.82382 1.01223 1.17886 0.78445 0.85740 0.82728 1.90818 1.53393 1.18022 1.76572 1.20014 1.04347 0.94484 0.93105 1.21552 0.95173 0.92543 0.99834 1.21031 1.00452 1.00830 0.91225 1.21191 0.99650 0.91973 0.99183 1.18984 1.03175 0.92299 0.84627 1.19046 0.97878 0.85309 0.91294 1.86469 1.32862 1.22816 1.79534 1.22638 0.83685 1.02980 0.92257 1.22488 1.02854 1.00447 0.96707 1.22631 0.82265 0.96837 0.99805 1.86397 1.26535 1.76264 1.34120 0.92768 0.92349 0.91313 0.95520 0.96220 0.77841 0.93542 0.91452 0.91448 0.91442 0.83602 0.84415 0.84624 0.92672 0.87833 0.89686 0.89298 0.87937 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.17 37.16 0.34 -1.64 16 2 C 0.13 2.22 2.80 -67.94 -0.19 2.03 16 3 H 0.10 2.03 6.91 -51.93 -0.36 1.67 16 4 C 0.15 2.96 5.56 -4.04 -0.02 2.93 16 5 N -0.73 -19.06 5.43 -59.91 -0.33 -19.39 16 6 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 7 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 8 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 9 N -0.93 -28.99 13.06 55.49 0.72 -28.27 16 10 Si 0.90 22.77 29.55 -169.99 -5.02 17.74 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 14 N -0.59 -10.21 2.24 -175.16 -0.39 -10.60 16 15 C 0.08 1.02 8.27 59.85 0.49 1.52 16 16 C 0.57 11.17 6.67 -12.47 -0.08 11.08 16 17 O -0.51 -12.32 15.89 -3.28 -0.05 -12.38 16 18 C -0.12 -1.97 4.90 -104.87 -0.51 -2.49 16 19 C -0.07 -1.07 7.62 -39.13 -0.30 -1.36 16 20 C -0.12 -1.39 10.02 -39.62 -0.40 -1.78 16 21 C -0.10 -1.19 9.99 -39.39 -0.39 -1.58 16 22 C 0.05 0.74 5.73 -39.34 -0.23 0.52 16 23 C 0.11 1.79 5.71 -38.78 -0.22 1.56 16 24 O -0.30 -5.00 9.23 -43.49 -0.40 -5.40 16 25 C 0.06 0.67 6.51 36.68 0.24 0.90 16 26 C -0.19 -1.62 5.92 -27.68 -0.16 -1.78 16 27 C 0.06 0.53 6.51 36.68 0.24 0.77 16 28 O -0.32 -4.12 10.16 -36.80 -0.37 -4.50 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.66 6.68 -51.93 -0.35 0.32 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.02 0.39 7.84 -51.93 -0.41 -0.02 16 34 H 0.39 11.10 7.06 -40.82 -0.29 10.82 16 35 H 0.25 7.72 8.31 -40.82 -0.34 7.39 16 36 H 0.07 1.02 7.57 -51.93 -0.39 0.63 16 37 H 0.07 0.76 6.44 -51.93 -0.33 0.43 16 38 H 0.07 0.78 5.67 -51.93 -0.29 0.49 16 39 H 0.15 2.22 6.59 -52.49 -0.35 1.87 16 40 H 0.14 1.24 8.06 -52.48 -0.42 0.81 16 41 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 42 H 0.05 0.56 7.93 -51.93 -0.41 0.15 16 43 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.06 0.45 7.93 -51.93 -0.41 0.03 16 LS Contribution 377.62 15.07 5.69 5.69 Total: -1.00 -36.84 377.62 -8.54 -45.38 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -6.94 Total: 8.52 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: -1.44 Total: 3.20 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: 0.01 Total: -58.26 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.83 Total: -22.27 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.84 -8.54 -45.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732449836.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.905 kcal (2) G-P(sol) polarization free energy of solvation -36.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds