Wall clock time and date at job start Tue Mar 31 2020 17:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47178 * 2 1 4 4 C 1.52997 * 109.47162 * 120.00347 * 2 1 3 5 5 N 1.46501 * 109.47053 * 175.00066 * 4 2 1 6 6 C 1.36942 * 120.00060 * 179.97438 * 5 4 2 7 7 H 1.07995 * 119.99673 * 0.02562 * 6 5 4 8 8 C 1.38805 * 119.99933 * 179.97438 * 6 5 4 9 9 N 1.31624 * 120.00305 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 120.00114 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.46888 * 89.99747 * 10 8 6 12 12 H 1.48494 * 109.47009 * 210.00223 * 10 8 6 13 13 H 1.48497 * 109.46626 * 329.99761 * 10 8 6 14 14 N 1.46498 * 109.46917 * 240.00028 * 2 1 3 15 15 C 1.46501 * 120.00335 * 299.99845 * 14 2 1 16 16 C 1.34781 * 120.00365 * 120.00186 * 14 2 1 17 17 O 1.21584 * 119.99307 * 4.43638 * 16 14 2 18 18 C 1.47538 * 120.00558 * 184.44453 * 16 14 2 19 19 C 1.39918 * 120.31285 * 310.87119 * 18 16 14 20 20 C 1.37748 * 120.05192 * 179.97438 * 19 18 16 21 21 C 1.38630 * 120.43766 * 359.92308 * 20 19 18 22 22 C 1.38355 * 120.05930 * 0.02562 * 21 20 19 23 23 C 1.38775 * 120.15096 * 0.07773 * 22 21 20 24 24 O 1.36174 * 119.69844 * 179.79973 * 23 22 21 25 25 C 1.42924 * 115.92206 * 68.40823 * 24 23 22 26 26 C 1.52069 * 110.72305 * 275.57472 * 25 24 23 27 27 C 1.52064 * 112.36605 * 64.82920 * 26 25 24 28 28 O 1.36491 * 120.29648 * 180.02562 * 22 21 20 29 29 H 1.09000 * 109.47458 * 60.00437 * 1 2 3 30 30 H 1.09005 * 109.46870 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47290 * 299.99859 * 1 2 3 32 32 H 1.09001 * 109.46862 * 294.99706 * 4 2 1 33 33 H 1.08994 * 109.47757 * 55.00012 * 4 2 1 34 34 H 0.97000 * 120.00256 * 359.97438 * 5 4 2 35 35 H 0.96999 * 120.00212 * 180.02562 * 9 8 6 36 36 H 1.09002 * 109.47195 * 273.14303 * 15 14 2 37 37 H 1.09000 * 109.46936 * 33.13922 * 15 14 2 38 38 H 1.09004 * 109.47536 * 153.13653 * 15 14 2 39 39 H 1.07996 * 119.97256 * 359.97438 * 19 18 16 40 40 H 1.08004 * 119.78127 * 179.97438 * 20 19 18 41 41 H 1.08002 * 119.97359 * 180.02562 * 21 20 19 42 42 H 1.09002 * 109.21731 * 35.92278 * 25 24 23 43 43 H 1.09003 * 109.21991 * 155.30481 * 25 24 23 44 44 H 1.09002 * 108.94084 * 304.06067 * 26 25 24 45 45 H 1.09001 * 108.86876 * 185.54925 * 26 25 24 46 46 H 1.09006 * 109.21567 * 174.79247 * 27 26 25 47 47 H 1.09005 * 109.21497 * 55.42176 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8264 1.1905 6 6 4.1839 -1.4380 2.2071 7 1 3.6469 -1.8432 3.0519 8 6 5.5672 -1.5380 2.1512 9 7 6.2217 -1.0446 1.1213 10 14 6.5001 -2.3730 3.5377 11 1 6.6317 -3.8225 3.2431 12 1 7.8507 -1.7681 3.6601 13 1 5.7594 -2.1920 4.8119 14 7 2.0182 -0.6906 -1.1962 15 6 1.6644 -2.0932 -1.4281 16 6 2.7931 -0.0357 -2.0834 17 8 3.1535 1.1022 -1.8520 18 6 3.2039 -0.6994 -3.3354 19 6 3.7500 -1.9872 -3.3058 20 6 4.1312 -2.6020 -4.4780 21 6 3.9764 -1.9538 -5.6936 22 6 3.4366 -0.6806 -5.7362 23 6 3.0500 -0.0478 -4.5632 24 8 2.5235 1.2070 -4.6155 25 6 1.2336 1.3186 -5.2208 26 6 1.3562 1.4274 -6.7326 27 6 1.9338 0.1677 -7.3585 28 8 3.2815 -0.0381 -6.9304 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.7516 -0.1584 2.1369 33 1 1.6054 -1.7198 1.2951 34 1 3.9824 -0.4628 0.4315 35 1 7.1884 -1.1149 1.0821 36 1 2.3849 -2.7378 -0.9246 37 1 0.6667 -2.2861 -1.0338 38 1 1.6781 -2.2993 -2.4983 39 1 3.8729 -2.4996 -2.3630 40 1 4.5527 -3.5960 -4.4500 41 1 4.2774 -2.4431 -6.6082 42 1 0.6425 0.4376 -4.9706 43 1 0.7329 2.2075 -4.8370 44 1 2.0027 2.2708 -6.9754 45 1 0.3677 1.6099 -7.1542 46 1 1.9130 0.2644 -8.4441 47 1 1.3287 -0.6895 -7.0632 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732449836.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:04 Heat of formation + Delta-G solvation = -79.228492 kcal Electronic energy + Delta-G solvation = -30398.110861 eV Core-core repulsion = 26353.647433 eV Total energy + Delta-G solvation = -4044.463428 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.18004 -40.88055 -38.61870 -38.48719 -37.71299 -35.85093 -34.02348 -33.63871 -32.24109 -31.20868 -30.21112 -27.91544 -27.57116 -27.38376 -25.37408 -24.40057 -23.14488 -22.95178 -22.09856 -20.45093 -19.40339 -19.08965 -18.60423 -18.06093 -17.71855 -16.99883 -16.70085 -16.59191 -16.38137 -16.06255 -15.98285 -15.34470 -15.16093 -15.13152 -15.05213 -14.78417 -14.28102 -14.14425 -13.87614 -13.73411 -13.43305 -13.37393 -13.23554 -13.07494 -12.99630 -12.77861 -12.66638 -12.53664 -12.18642 -12.13649 -11.90123 -11.80358 -11.73079 -11.41093 -11.26851 -10.96948 -10.72661 -9.92670 -9.62752 -9.54363 -8.99975 -7.92025 -5.23174 -0.21211 0.02083 1.45341 1.48374 1.56812 1.68362 1.95656 2.31573 2.43712 2.55892 2.72845 3.40251 3.43320 3.68380 3.74268 3.84341 3.93494 4.06050 4.09206 4.15949 4.23041 4.25096 4.31289 4.32257 4.34009 4.38488 4.44722 4.52630 4.64609 4.74621 4.77727 4.81290 4.83596 4.89360 4.97760 5.05732 5.08853 5.12006 5.15672 5.27643 5.30874 5.47970 5.51401 5.65449 6.09710 6.26430 6.38241 6.49699 7.16263 7.32932 8.09293 8.32877 9.30827 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015230 B = 0.003665 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.010466 B = 7637.875445 C = 8624.310631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.128 3.872 3 H 0.063 0.937 4 C 0.144 3.856 5 N -0.743 5.743 6 C -0.244 4.244 7 H 0.080 0.920 8 C -0.076 4.076 9 N -0.970 5.970 10 Si 0.976 3.024 11 H -0.282 1.282 12 H -0.301 1.301 13 H -0.269 1.269 14 N -0.589 5.589 15 C 0.074 3.926 16 C 0.557 3.443 17 O -0.576 6.576 18 C -0.144 4.144 19 C -0.082 4.082 20 C -0.104 4.104 21 C -0.087 4.087 22 C 0.050 3.950 23 C 0.094 3.906 24 O -0.339 6.339 25 C 0.048 3.952 26 C -0.180 4.180 27 C 0.051 3.949 28 O -0.334 6.334 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.030 0.970 33 H 0.040 0.960 34 H 0.370 0.630 35 H 0.248 0.752 36 H 0.049 0.951 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.134 0.866 40 H 0.173 0.827 41 H 0.171 0.829 42 H 0.064 0.936 43 H 0.108 0.892 44 H 0.070 0.930 45 H 0.126 0.874 46 H 0.133 0.867 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.894 -4.962 -19.261 26.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.025 3.975 3 H 0.081 0.919 4 C 0.016 3.984 5 N -0.386 5.386 6 C -0.376 4.376 7 H 0.098 0.902 8 C -0.268 4.268 9 N -0.621 5.621 10 Si 0.805 3.195 11 H -0.209 1.209 12 H -0.228 1.228 13 H -0.194 1.194 14 N -0.321 5.321 15 C -0.067 4.067 16 C 0.346 3.654 17 O -0.455 6.455 18 C -0.148 4.148 19 C -0.101 4.101 20 C -0.121 4.121 21 C -0.106 4.106 22 C 0.006 3.994 23 C 0.048 3.952 24 O -0.256 6.256 25 C -0.026 4.026 26 C -0.218 4.218 27 C -0.023 4.023 28 O -0.251 6.251 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.202 0.798 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.115 0.885 38 H 0.106 0.894 39 H 0.151 0.849 40 H 0.191 0.809 41 H 0.189 0.811 42 H 0.082 0.918 43 H 0.126 0.874 44 H 0.089 0.911 45 H 0.144 0.856 46 H 0.151 0.849 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.546 -4.207 -19.005 25.547 hybrid contribution 1.049 0.227 0.886 1.391 sum -15.497 -3.980 -18.119 24.172 Atomic orbital electron populations 1.21968 0.90896 1.03867 1.03175 1.21325 0.96264 0.96237 0.83720 0.91911 1.21197 0.84183 0.97927 0.95045 1.42558 1.02027 1.69850 1.24155 1.19656 0.89955 1.28348 0.99600 0.90237 1.25620 0.97534 1.03101 1.00588 1.69902 1.06861 1.52768 1.32530 0.85105 0.77444 0.77900 0.79067 1.20856 1.22764 1.19365 1.47666 1.49619 1.13382 1.21398 1.22093 1.02135 0.79759 1.02733 1.18468 0.77812 0.85225 0.83869 1.90761 1.55930 1.20764 1.78095 1.19951 1.06884 0.95762 0.92219 1.21521 0.96064 0.91871 1.00642 1.21370 0.98833 1.01916 0.90005 1.21575 0.97620 0.90960 1.00411 1.19164 1.02967 0.92928 0.84335 1.19283 0.98702 0.85324 0.91844 1.86395 1.35025 1.23557 1.80650 1.22945 0.81957 1.03616 0.94054 1.22462 1.04621 1.00003 0.94703 1.22980 0.80615 0.97260 1.01406 1.86362 1.29098 1.76370 1.33253 0.91977 0.89986 0.89869 0.95241 0.94168 0.79820 0.94280 0.93214 0.88455 0.89413 0.84867 0.80936 0.81115 0.91771 0.87422 0.91117 0.85584 0.84941 0.91120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 9.17 71.98 0.66 -2.72 16 2 C 0.13 4.59 2.80 44.99 0.13 4.72 16 3 H 0.06 2.73 6.91 -2.39 -0.02 2.71 16 4 C 0.14 5.87 5.56 86.38 0.48 6.35 16 5 N -0.74 -40.05 5.43 -343.47 -1.87 -41.91 16 6 C -0.24 -14.03 9.99 84.03 0.84 -13.19 16 7 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 8 C -0.08 -4.54 5.50 84.86 0.47 -4.08 16 9 N -0.97 -62.86 13.06 21.65 0.28 -62.58 16 10 Si 0.98 47.40 29.55 68.60 2.03 49.43 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 12 H -0.30 -14.92 7.11 99.48 0.71 -14.22 16 13 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 14 N -0.59 -20.89 2.24 -826.36 -1.85 -22.75 16 15 C 0.07 1.98 8.27 127.77 1.06 3.03 16 16 C 0.56 23.49 6.67 86.70 0.58 24.07 16 17 O -0.58 -30.17 15.89 4.22 0.07 -30.10 16 18 C -0.14 -5.14 4.90 -20.03 -0.10 -5.24 16 19 C -0.08 -2.44 7.62 22.56 0.17 -2.27 16 20 C -0.10 -2.23 10.02 22.25 0.22 -2.01 16 21 C -0.09 -1.83 9.99 22.39 0.22 -1.60 16 22 C 0.05 1.35 5.73 22.43 0.13 1.48 16 23 C 0.09 3.12 5.71 22.79 0.13 3.25 16 24 O -0.34 -11.85 9.23 -73.36 -0.68 -12.53 16 25 C 0.05 1.09 6.51 71.67 0.47 1.55 16 26 C -0.18 -2.84 5.92 29.98 0.18 -2.66 16 27 C 0.05 0.78 6.51 71.67 0.47 1.25 16 28 O -0.33 -8.17 10.16 -84.42 -0.86 -9.03 16 29 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.08 1.59 6.68 -2.38 -0.02 1.57 16 31 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.03 1.20 8.14 -2.39 -0.02 1.19 16 33 H 0.04 1.51 7.84 -2.39 -0.02 1.49 16 34 H 0.37 22.38 7.06 -92.71 -0.65 21.73 16 35 H 0.25 15.65 8.31 -92.71 -0.77 14.88 16 36 H 0.05 1.51 7.57 -2.39 -0.02 1.49 16 37 H 0.10 1.96 6.44 -2.39 -0.02 1.94 16 38 H 0.09 1.97 5.67 -2.38 -0.01 1.96 16 39 H 0.13 4.21 6.59 -2.91 -0.02 4.19 16 40 H 0.17 2.48 8.06 -2.91 -0.02 2.46 16 41 H 0.17 2.36 8.06 -2.91 -0.02 2.34 16 42 H 0.06 1.28 7.93 -2.39 -0.02 1.26 16 43 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.13 1.22 8.14 -2.38 -0.02 1.20 16 47 H 0.07 0.90 7.93 -2.38 -0.02 0.88 16 Total: -1.00 -86.12 377.62 3.55 -82.57 By element: Atomic # 1 Polarization: 34.62 SS G_CDS: 0.33 Total: 34.96 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 6.10 Total: 11.94 kcal Atomic # 7 Polarization: -123.80 SS G_CDS: -3.44 Total: -127.24 kcal Atomic # 8 Polarization: -50.19 SS G_CDS: -1.47 Total: -51.66 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Total: -86.12 3.55 -82.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732449836.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.342 kcal (2) G-P(sol) polarization free energy of solvation -86.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds