Wall clock time and date at job start Tue Mar 31 2020 18:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47496 * 2 1 4 4 O 1.42905 * 109.47222 * 240.00009 * 2 1 3 5 5 C 1.35901 * 116.99927 * 85.24878 * 4 2 1 6 6 C 1.38735 * 120.05387 * 174.57974 * 5 4 2 7 7 C 1.38142 * 119.94297 * 180.29938 * 6 5 4 8 8 C 1.38261 * 120.05526 * 359.95574 * 7 6 5 9 9 C 1.38259 * 120.11312 * 0.04917 * 8 7 6 10 10 C 1.38147 * 120.05954 * 359.97085 * 9 8 7 11 11 C 1.50703 * 109.47130 * 120.00195 * 2 1 3 12 12 O 1.21278 * 119.99879 * 113.63308 * 11 2 1 13 13 N 1.34779 * 119.99612 * 293.63054 * 11 2 1 14 14 C 1.46497 * 119.99818 * 184.94528 * 13 11 2 15 15 C 1.53001 * 109.46988 * 183.95727 * 14 13 11 16 16 H 1.08993 * 109.67833 * 300.60940 * 15 14 13 17 17 C 1.53296 * 109.68015 * 180.09263 * 15 14 13 18 18 O 1.42966 * 109.22266 * 187.97445 * 17 15 14 19 19 C 1.42959 * 114.16642 * 62.58107 * 18 17 15 20 20 C 1.53291 * 109.22415 * 297.42357 * 19 18 17 21 21 N 1.47146 * 108.38951 * 52.29840 * 20 19 18 22 22 C 1.36934 * 120.98383 * 129.48618 * 21 20 19 23 23 H 1.08000 * 120.00256 * 210.91849 * 22 21 20 24 24 C 1.38807 * 120.00130 * 30.92124 * 22 21 20 25 25 N 1.31625 * 119.99688 * 12.31015 * 24 22 21 26 26 Si 1.86793 * 120.00417 * 192.31359 * 24 22 21 27 27 H 1.48497 * 109.47268 * 94.41187 * 26 24 22 28 28 H 1.48506 * 109.47557 * 214.41461 * 26 24 22 29 29 H 1.48497 * 109.47331 * 334.41184 * 26 24 22 30 30 H 1.08998 * 109.47234 * 304.58069 * 1 2 3 31 31 H 1.09006 * 109.46945 * 64.57339 * 1 2 3 32 32 H 1.09006 * 109.47393 * 184.57208 * 1 2 3 33 33 H 1.07999 * 120.02805 * 0.26095 * 6 5 4 34 34 H 1.08005 * 119.96945 * 179.97438 * 7 6 5 35 35 H 1.08004 * 119.94119 * 180.02562 * 8 7 6 36 36 H 1.08003 * 119.97236 * 179.97438 * 9 8 7 37 37 H 1.07991 * 120.03167 * 180.02562 * 10 9 8 38 38 H 0.97001 * 119.99845 * 4.95368 * 13 11 2 39 39 H 1.09001 * 109.47294 * 303.95997 * 14 13 11 40 40 H 1.09003 * 109.47286 * 63.95706 * 14 13 11 41 41 H 1.08998 * 109.51428 * 307.89955 * 17 15 14 42 42 H 1.09004 * 109.51512 * 68.00313 * 17 15 14 43 43 H 1.09005 * 109.51153 * 57.34319 * 19 18 17 44 44 H 1.08993 * 109.51104 * 177.49150 * 19 18 17 45 45 H 1.09003 * 109.68472 * 172.02539 * 20 19 18 46 46 H 1.09002 * 109.67957 * 292.57484 * 20 19 18 47 47 H 0.96998 * 119.99713 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.1174 0.0639 -2.3029 6 6 2.6783 -0.4951 -3.4421 7 6 2.7957 0.2586 -4.5938 8 6 2.3541 1.5686 -4.6121 9 6 1.7949 2.1280 -3.4781 10 6 1.6755 1.3787 -2.3236 11 6 2.0323 -0.7105 1.2305 12 8 2.6314 -1.7594 1.1229 13 7 1.8158 -0.1800 2.4504 14 6 2.3963 -0.8123 3.6376 15 6 1.9206 -0.0760 4.8916 16 1 2.2262 0.9690 4.8417 17 6 2.5273 -0.7325 6.1370 18 8 1.9354 -0.1608 7.3061 19 6 0.5269 -0.3798 7.4158 20 6 -0.1822 0.2946 6.2359 21 7 0.4548 -0.1605 4.9899 22 6 -0.2943 -0.6477 3.9524 23 1 0.1165 -1.4014 3.2969 24 6 -1.5818 -0.1730 3.7430 25 7 -1.9972 0.9037 4.3760 26 14 -2.7248 -1.0621 2.5630 27 1 -3.5689 -2.0212 3.3197 28 1 -3.5937 -0.0731 1.8757 29 1 -1.9204 -1.7987 1.5553 30 1 -0.3633 0.5833 0.8461 31 1 -0.3633 0.4413 -0.9282 32 1 -0.3634 -1.0244 0.0819 33 1 3.0233 -1.5184 -3.4283 34 1 3.2326 -0.1760 -5.4808 35 1 2.4465 2.1561 -5.5137 36 1 1.4511 3.1517 -3.4948 37 1 1.2383 1.8160 -1.4383 38 1 1.2755 0.6203 2.5423 39 1 2.0797 -1.8542 3.6859 40 1 3.4837 -0.7654 3.5792 41 1 2.3303 -1.8043 6.1161 42 1 3.6036 -0.5604 6.1517 43 1 0.3226 -1.4504 7.3996 44 1 0.1640 0.0467 8.3508 45 1 -1.2359 0.0155 6.2326 46 1 -0.0889 1.3772 6.3217 47 1 -2.8968 1.2356 4.2294 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733706147.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:27 Heat of formation + Delta-G solvation = -57.516597 kcal Electronic energy + Delta-G solvation = -29831.455763 eV Core-core repulsion = 25787.933833 eV Total energy + Delta-G solvation = -4043.521930 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.49986 -39.24814 -38.38629 -37.20424 -35.34030 -33.68547 -32.44863 -31.35461 -30.80632 -30.38685 -29.60627 -27.26755 -25.86456 -24.21519 -23.51411 -22.83667 -22.18957 -21.55987 -19.93183 -19.59647 -18.38779 -17.39918 -16.48779 -16.19810 -15.91272 -15.77404 -15.51520 -15.32085 -14.75679 -14.65475 -14.48193 -14.29564 -13.93597 -13.78524 -13.62490 -13.46448 -13.04840 -13.00723 -12.67607 -12.56370 -12.22842 -11.89164 -11.70841 -11.64697 -11.62319 -11.13920 -10.99361 -10.89156 -10.85988 -10.74701 -10.46567 -10.24757 -10.10025 -9.71578 -9.42489 -9.09698 -9.03298 -8.74531 -8.37799 -8.22789 -6.80464 -5.97232 -3.46521 1.24063 1.36864 2.83046 2.98837 3.22220 3.31827 3.34304 3.71038 3.91343 4.27724 4.47934 4.68718 4.79992 4.85277 4.99961 5.04639 5.08219 5.11288 5.20509 5.27648 5.36872 5.51336 5.54220 5.66741 5.75933 5.79799 5.83928 5.92365 5.96466 6.01843 6.10910 6.17285 6.24549 6.27561 6.31644 6.34176 6.42811 6.46444 6.67987 6.68650 6.97039 7.00743 7.39430 7.42111 7.65145 7.81308 8.05014 8.22084 8.66620 8.99022 9.59483 10.18673 11.09181 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015019 B = 0.003418 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.842504 B = 8189.970145 C = 9253.753012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.071 3.929 3 H 0.095 0.905 4 O -0.285 6.285 5 C 0.136 3.864 6 C -0.153 4.153 7 C -0.082 4.082 8 C -0.166 4.166 9 C -0.080 4.080 10 C -0.213 4.213 11 C 0.516 3.484 12 O -0.539 6.539 13 N -0.689 5.689 14 C 0.137 3.863 15 C 0.125 3.875 16 H 0.042 0.958 17 C 0.056 3.944 18 O -0.392 6.392 19 C 0.035 3.965 20 C 0.144 3.856 21 N -0.591 5.591 22 C -0.254 4.254 23 H 0.074 0.926 24 C 0.011 3.989 25 N -0.899 5.899 26 Si 0.887 3.113 27 H -0.287 1.287 28 H -0.289 1.289 29 H -0.272 1.272 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.131 0.869 34 H 0.127 0.873 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.132 0.868 38 H 0.414 0.586 39 H 0.071 0.929 40 H 0.059 0.941 41 H 0.047 0.953 42 H 0.083 0.917 43 H 0.041 0.959 44 H 0.080 0.920 45 H 0.091 0.909 46 H 0.030 0.970 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.784 2.832 -9.485 12.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.011 3.989 3 H 0.112 0.888 4 O -0.197 6.197 5 C 0.090 3.910 6 C -0.172 4.172 7 C -0.100 4.100 8 C -0.184 4.184 9 C -0.098 4.098 10 C -0.232 4.232 11 C 0.300 3.700 12 O -0.416 6.416 13 N -0.341 5.341 14 C 0.013 3.987 15 C 0.018 3.982 16 H 0.059 0.941 17 C -0.023 4.023 18 O -0.311 6.311 19 C -0.043 4.043 20 C 0.019 3.981 21 N -0.317 5.317 22 C -0.384 4.384 23 H 0.092 0.908 24 C -0.188 4.188 25 N -0.542 5.542 26 Si 0.716 3.284 27 H -0.214 1.214 28 H -0.215 1.215 29 H -0.197 1.197 30 H 0.110 0.890 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.149 0.851 34 H 0.145 0.855 35 H 0.139 0.861 36 H 0.142 0.858 37 H 0.150 0.850 38 H 0.252 0.748 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.101 0.899 43 H 0.059 0.941 44 H 0.098 0.902 45 H 0.109 0.891 46 H 0.048 0.952 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.202 2.071 -9.390 12.014 hybrid contribution -1.428 0.056 -0.629 1.561 sum 5.775 2.127 -10.019 11.758 Atomic orbital electron populations 1.22419 0.92259 1.05035 1.03965 1.22226 0.96075 0.96641 0.83954 0.88774 1.86214 1.80631 1.37016 1.15863 1.19148 0.94556 0.90274 0.86978 1.20479 1.03941 1.01418 0.91372 1.20945 0.98051 0.93999 0.97028 1.21030 1.02784 0.95888 0.98681 1.20951 0.97101 0.99410 0.92309 1.21395 1.06974 0.94355 1.00457 1.19846 0.80277 0.85689 0.84235 1.90681 1.42081 1.22197 1.86634 1.45768 1.52353 1.31443 1.04570 1.21207 0.95830 0.98087 0.83601 1.21429 0.87434 0.97175 0.92145 0.94053 1.22863 0.96531 0.96737 0.86201 1.87805 1.22668 1.78299 1.42283 1.23348 0.81175 0.99593 1.00199 1.21403 0.97866 0.95986 0.82870 1.44096 0.98883 1.75086 1.13587 1.19260 0.96057 1.15933 1.07133 0.90811 1.25093 0.99130 0.95842 0.98765 1.69991 1.18069 1.21466 1.44707 0.86545 0.81351 0.79314 0.81145 1.21426 1.21478 1.19689 0.89000 0.91201 0.90558 0.85146 0.85532 0.86125 0.85847 0.85026 0.74834 0.91053 0.92293 0.93448 0.89872 0.94089 0.90215 0.89090 0.95206 0.93453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.81 9.11 37.15 0.34 -2.47 16 2 C 0.07 1.12 2.64 -27.88 -0.07 1.04 16 3 H 0.09 1.24 6.28 -51.93 -0.33 0.92 16 4 O -0.29 -4.81 9.34 -39.26 -0.37 -5.17 16 5 C 0.14 1.95 6.59 -39.22 -0.26 1.70 16 6 C -0.15 -1.95 9.99 -39.43 -0.39 -2.34 16 7 C -0.08 -0.85 10.04 -39.61 -0.40 -1.25 16 8 C -0.17 -1.64 10.04 -39.57 -0.40 -2.04 16 9 C -0.08 -0.84 10.04 -39.61 -0.40 -1.24 16 10 C -0.21 -2.65 8.24 -39.43 -0.32 -2.97 16 11 C 0.52 9.61 7.16 -10.98 -0.08 9.53 16 12 O -0.54 -11.86 16.50 -14.27 -0.24 -12.10 16 13 N -0.69 -12.32 3.66 -60.29 -0.22 -12.54 16 14 C 0.14 2.43 4.46 -4.04 -0.02 2.41 16 15 C 0.13 2.33 3.19 -67.42 -0.22 2.12 16 16 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 17 C 0.06 0.95 6.29 37.31 0.23 1.19 16 18 O -0.39 -7.39 10.74 -35.23 -0.38 -7.77 16 19 C 0.03 0.65 6.98 37.31 0.26 0.91 16 20 C 0.14 3.16 5.38 -3.54 -0.02 3.14 16 21 N -0.59 -13.02 3.03 -164.31 -0.50 -13.52 16 22 C -0.25 -6.02 7.19 -15.06 -0.11 -6.13 16 23 H 0.07 1.80 5.81 -52.49 -0.30 1.50 16 24 C 0.01 0.28 5.02 -17.43 -0.09 0.19 16 25 N -0.90 -23.21 11.21 55.49 0.62 -22.58 16 26 Si 0.89 20.00 29.57 -169.99 -5.03 14.97 16 27 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 28 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 29 H -0.27 -6.04 6.65 56.52 0.38 -5.67 16 30 H 0.09 1.48 7.99 -51.93 -0.41 1.06 16 31 H 0.07 0.95 7.02 -51.93 -0.36 0.59 16 32 H 0.08 1.36 7.69 -51.93 -0.40 0.96 16 33 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 34 H 0.13 0.97 8.06 -52.48 -0.42 0.54 16 35 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 36 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 37 H 0.13 1.50 5.51 -52.49 -0.29 1.21 16 38 H 0.41 7.46 7.41 -40.82 -0.30 7.15 16 39 H 0.07 1.40 7.51 -51.93 -0.39 1.01 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 43 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.09 2.20 6.36 -51.93 -0.33 1.87 16 46 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.26 6.51 8.31 -40.82 -0.34 6.17 16 LS Contribution 376.39 15.07 5.67 5.67 Total: -1.00 -29.35 376.39 -9.30 -38.65 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -6.93 Total: 10.61 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: -1.94 Total: 3.78 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: -0.10 Total: -48.64 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.98 Total: -25.04 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.03 Total: 14.97 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.35 -9.30 -38.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733706147.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.868 kcal (2) G-P(sol) polarization free energy of solvation -29.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds