Wall clock time and date at job start Tue Mar 31 2020 18:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47496 * 2 1 4 4 O 1.42905 * 109.47222 * 240.00009 * 2 1 3 5 5 C 1.35901 * 116.99927 * 85.24878 * 4 2 1 6 6 C 1.38735 * 120.05387 * 174.57974 * 5 4 2 7 7 C 1.38142 * 119.94297 * 180.29938 * 6 5 4 8 8 C 1.38261 * 120.05526 * 359.95574 * 7 6 5 9 9 C 1.38259 * 120.11312 * 0.04917 * 8 7 6 10 10 C 1.38147 * 120.05954 * 359.97085 * 9 8 7 11 11 C 1.50703 * 109.47130 * 120.00195 * 2 1 3 12 12 O 1.21278 * 119.99879 * 113.63308 * 11 2 1 13 13 N 1.34779 * 119.99612 * 293.63054 * 11 2 1 14 14 C 1.46497 * 119.99818 * 184.94528 * 13 11 2 15 15 C 1.53001 * 109.46988 * 183.95727 * 14 13 11 16 16 H 1.08993 * 109.67833 * 300.60940 * 15 14 13 17 17 C 1.53296 * 109.68015 * 180.09263 * 15 14 13 18 18 O 1.42966 * 109.22266 * 187.97445 * 17 15 14 19 19 C 1.42959 * 114.16642 * 62.58107 * 18 17 15 20 20 C 1.53291 * 109.22415 * 297.42357 * 19 18 17 21 21 N 1.47146 * 108.38951 * 52.29840 * 20 19 18 22 22 C 1.36934 * 120.98383 * 129.48618 * 21 20 19 23 23 H 1.08000 * 120.00256 * 210.91849 * 22 21 20 24 24 C 1.38807 * 120.00130 * 30.92124 * 22 21 20 25 25 N 1.31625 * 119.99688 * 12.31015 * 24 22 21 26 26 Si 1.86793 * 120.00417 * 192.31359 * 24 22 21 27 27 H 1.48497 * 109.47268 * 94.41187 * 26 24 22 28 28 H 1.48506 * 109.47557 * 214.41461 * 26 24 22 29 29 H 1.48497 * 109.47331 * 334.41184 * 26 24 22 30 30 H 1.08998 * 109.47234 * 304.58069 * 1 2 3 31 31 H 1.09006 * 109.46945 * 64.57339 * 1 2 3 32 32 H 1.09006 * 109.47393 * 184.57208 * 1 2 3 33 33 H 1.07999 * 120.02805 * 0.26095 * 6 5 4 34 34 H 1.08005 * 119.96945 * 179.97438 * 7 6 5 35 35 H 1.08004 * 119.94119 * 180.02562 * 8 7 6 36 36 H 1.08003 * 119.97236 * 179.97438 * 9 8 7 37 37 H 1.07991 * 120.03167 * 180.02562 * 10 9 8 38 38 H 0.97001 * 119.99845 * 4.95368 * 13 11 2 39 39 H 1.09001 * 109.47294 * 303.95997 * 14 13 11 40 40 H 1.09003 * 109.47286 * 63.95706 * 14 13 11 41 41 H 1.08998 * 109.51428 * 307.89955 * 17 15 14 42 42 H 1.09004 * 109.51512 * 68.00313 * 17 15 14 43 43 H 1.09005 * 109.51153 * 57.34319 * 19 18 17 44 44 H 1.08993 * 109.51104 * 177.49150 * 19 18 17 45 45 H 1.09003 * 109.68472 * 172.02539 * 20 19 18 46 46 H 1.09002 * 109.67957 * 292.57484 * 20 19 18 47 47 H 0.96998 * 119.99713 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.1174 0.0639 -2.3029 6 6 2.6783 -0.4951 -3.4421 7 6 2.7957 0.2586 -4.5938 8 6 2.3541 1.5686 -4.6121 9 6 1.7949 2.1280 -3.4781 10 6 1.6755 1.3787 -2.3236 11 6 2.0323 -0.7105 1.2305 12 8 2.6314 -1.7594 1.1229 13 7 1.8158 -0.1800 2.4504 14 6 2.3963 -0.8123 3.6376 15 6 1.9206 -0.0760 4.8916 16 1 2.2262 0.9690 4.8417 17 6 2.5273 -0.7325 6.1370 18 8 1.9354 -0.1608 7.3061 19 6 0.5269 -0.3798 7.4158 20 6 -0.1822 0.2946 6.2359 21 7 0.4548 -0.1605 4.9899 22 6 -0.2943 -0.6477 3.9524 23 1 0.1165 -1.4014 3.2969 24 6 -1.5818 -0.1730 3.7430 25 7 -1.9972 0.9037 4.3760 26 14 -2.7248 -1.0621 2.5630 27 1 -3.5689 -2.0212 3.3197 28 1 -3.5937 -0.0731 1.8757 29 1 -1.9204 -1.7987 1.5553 30 1 -0.3633 0.5833 0.8461 31 1 -0.3633 0.4413 -0.9282 32 1 -0.3634 -1.0244 0.0819 33 1 3.0233 -1.5184 -3.4283 34 1 3.2326 -0.1760 -5.4808 35 1 2.4465 2.1561 -5.5137 36 1 1.4511 3.1517 -3.4948 37 1 1.2383 1.8160 -1.4383 38 1 1.2755 0.6203 2.5423 39 1 2.0797 -1.8542 3.6859 40 1 3.4837 -0.7654 3.5792 41 1 2.3303 -1.8043 6.1161 42 1 3.6036 -0.5604 6.1517 43 1 0.3226 -1.4504 7.3996 44 1 0.1640 0.0467 8.3508 45 1 -1.2359 0.0155 6.2326 46 1 -0.0889 1.3772 6.3217 47 1 -2.8968 1.2356 4.2294 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733706147.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:26 Heat of formation + Delta-G solvation = -74.565928 kcal Electronic energy + Delta-G solvation = -29832.195077 eV Core-core repulsion = 25787.933833 eV Total energy + Delta-G solvation = -4044.261244 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.68299 -40.60717 -39.83773 -38.28343 -36.92645 -35.36688 -33.84982 -32.83352 -32.07296 -31.63850 -30.57440 -28.98571 -27.33849 -25.47945 -25.23511 -23.82310 -23.40639 -22.83426 -21.48323 -21.07515 -19.43644 -18.92886 -18.02236 -17.55704 -17.42878 -16.96560 -16.70804 -16.58730 -16.27712 -16.05211 -15.96198 -15.53952 -15.31310 -15.23717 -15.05012 -14.72035 -14.39444 -14.29416 -14.14278 -13.75919 -13.51663 -13.38441 -13.12285 -12.94546 -12.80531 -12.73340 -12.51559 -12.45256 -12.19818 -12.02486 -11.96687 -11.84033 -11.74744 -11.29951 -10.93400 -10.64721 -10.55310 -9.95031 -9.93849 -9.19473 -8.62281 -7.87103 -5.36868 0.38842 0.47444 1.36792 1.46204 1.50258 1.51119 1.62896 2.42996 2.63215 2.84449 3.03562 3.28630 3.42379 3.54251 3.70634 3.81329 3.93268 4.00081 4.01720 4.21879 4.28057 4.32664 4.37916 4.47893 4.50605 4.52725 4.60224 4.61533 4.64125 4.66267 4.73674 4.75380 5.00448 5.03010 5.09195 5.11249 5.30164 5.36690 5.47561 5.48699 5.59873 5.62922 5.70368 5.84766 6.29918 6.34756 6.38238 6.58512 7.11166 7.18950 7.76865 8.33095 9.17274 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015019 B = 0.003418 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.842504 B = 8189.970145 C = 9253.753012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.079 3.921 3 H 0.122 0.878 4 O -0.312 6.312 5 C 0.103 3.897 6 C -0.172 4.172 7 C -0.080 4.080 8 C -0.160 4.160 9 C -0.083 4.083 10 C -0.222 4.222 11 C 0.513 3.487 12 O -0.577 6.577 13 N -0.685 5.685 14 C 0.141 3.859 15 C 0.127 3.873 16 H 0.043 0.957 17 C 0.057 3.943 18 O -0.396 6.396 19 C 0.046 3.954 20 C 0.150 3.850 21 N -0.605 5.605 22 C -0.239 4.239 23 H 0.066 0.934 24 C -0.022 4.022 25 N -0.922 5.922 26 Si 0.927 3.073 27 H -0.299 1.299 28 H -0.288 1.288 29 H -0.270 1.270 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.050 0.950 33 H 0.126 0.874 34 H 0.155 0.845 35 H 0.152 0.848 36 H 0.150 0.850 37 H 0.137 0.863 38 H 0.414 0.586 39 H 0.050 0.950 40 H 0.084 0.916 41 H 0.047 0.953 42 H 0.119 0.881 43 H 0.042 0.958 44 H 0.104 0.896 45 H 0.064 0.936 46 H 0.010 0.990 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.976 3.952 -10.731 13.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.019 3.981 3 H 0.139 0.861 4 O -0.226 6.226 5 C 0.058 3.942 6 C -0.190 4.190 7 C -0.098 4.098 8 C -0.178 4.178 9 C -0.101 4.101 10 C -0.240 4.240 11 C 0.298 3.702 12 O -0.457 6.457 13 N -0.336 5.336 14 C 0.017 3.983 15 C 0.021 3.979 16 H 0.061 0.939 17 C -0.022 4.022 18 O -0.315 6.315 19 C -0.032 4.032 20 C 0.024 3.976 21 N -0.331 5.331 22 C -0.369 4.369 23 H 0.084 0.916 24 C -0.219 4.219 25 N -0.568 5.568 26 Si 0.757 3.243 27 H -0.227 1.227 28 H -0.215 1.215 29 H -0.195 1.195 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.069 0.931 33 H 0.144 0.856 34 H 0.173 0.827 35 H 0.170 0.830 36 H 0.167 0.833 37 H 0.155 0.845 38 H 0.252 0.748 39 H 0.069 0.931 40 H 0.102 0.898 41 H 0.066 0.934 42 H 0.137 0.863 43 H 0.060 0.940 44 H 0.122 0.878 45 H 0.082 0.918 46 H 0.028 0.972 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 8.412 3.199 -10.636 13.933 hybrid contribution -1.724 -0.279 -0.322 1.776 sum 6.688 2.920 -10.958 13.165 Atomic orbital electron populations 1.22330 0.92320 1.03380 1.04799 1.22129 0.95775 0.97361 0.82831 0.86095 1.86166 1.81376 1.38302 1.16712 1.19468 0.96764 0.91333 0.86617 1.20706 1.04504 1.01818 0.92006 1.21310 0.97302 0.94193 0.96995 1.21470 1.01007 0.95784 0.99532 1.21329 0.96494 1.00467 0.91766 1.21545 1.07122 0.93771 1.01599 1.20367 0.79483 0.85227 0.85106 1.90652 1.43955 1.23908 1.87223 1.45774 1.51996 1.31166 1.04672 1.21194 0.97187 0.96667 0.83277 1.21554 0.85312 0.97523 0.93509 0.93907 1.22995 0.98225 0.96402 0.84577 1.87810 1.22330 1.78492 1.42869 1.23214 0.81033 0.99328 0.99643 1.21230 0.96972 0.95054 0.84341 1.44286 1.00436 1.74949 1.13379 1.19235 0.96036 1.14912 1.06744 0.91646 1.25430 1.00071 0.96406 0.99972 1.70086 1.17928 1.22642 1.46108 0.85910 0.80072 0.78300 0.79980 1.22669 1.21461 1.19536 0.89570 0.89083 0.93118 0.85556 0.82721 0.83012 0.83269 0.84497 0.74828 0.93116 0.89802 0.93447 0.86323 0.94004 0.87791 0.91778 0.97200 0.94036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.36 9.11 71.98 0.66 -4.71 16 2 C 0.08 2.48 2.64 29.85 0.08 2.56 16 3 H 0.12 3.10 6.28 -2.39 -0.02 3.08 16 4 O -0.31 -10.69 9.34 -73.47 -0.69 -11.38 16 5 C 0.10 2.91 6.59 22.51 0.15 3.06 16 6 C -0.17 -4.26 9.99 22.37 0.22 -4.03 16 7 C -0.08 -1.47 10.04 22.25 0.22 -1.24 16 8 C -0.16 -2.62 10.04 22.28 0.22 -2.39 16 9 C -0.08 -1.51 10.04 22.25 0.22 -1.29 16 10 C -0.22 -5.17 8.24 22.37 0.18 -4.98 16 11 C 0.51 19.29 7.16 87.66 0.63 19.92 16 12 O -0.58 -25.94 16.50 15.94 0.26 -25.68 16 13 N -0.68 -24.43 3.66 -463.06 -1.69 -26.12 16 14 C 0.14 4.90 4.46 86.38 0.39 5.28 16 15 C 0.13 4.59 3.19 44.97 0.14 4.74 16 16 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 17 C 0.06 1.80 6.29 72.08 0.45 2.25 16 18 O -0.40 -14.07 10.74 -148.98 -1.60 -15.67 16 19 C 0.05 1.64 6.98 72.08 0.50 2.15 16 20 C 0.15 6.57 5.38 86.35 0.46 7.04 16 21 N -0.60 -26.59 3.03 -673.75 -2.04 -28.63 16 22 C -0.24 -11.42 7.19 84.03 0.60 -10.81 16 23 H 0.07 3.24 5.81 -2.91 -0.02 3.23 16 24 C -0.02 -1.08 5.02 84.86 0.43 -0.65 16 25 N -0.92 -48.42 11.21 21.65 0.24 -48.18 16 26 Si 0.93 41.79 29.57 68.60 2.03 43.82 16 27 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 28 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 29 H -0.27 -12.00 6.65 99.48 0.66 -11.34 16 30 H 0.09 2.78 7.99 -2.39 -0.02 2.76 16 31 H 0.09 2.42 7.02 -2.38 -0.02 2.41 16 32 H 0.05 1.83 7.69 -2.38 -0.02 1.82 16 33 H 0.13 3.08 8.06 -2.91 -0.02 3.06 16 34 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 35 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 36 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 37 H 0.14 2.90 5.51 -2.92 -0.02 2.89 16 38 H 0.41 14.87 7.41 -92.71 -0.69 14.18 16 39 H 0.05 2.00 7.51 -2.39 -0.02 1.98 16 40 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 41 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.12 2.96 8.14 -2.38 -0.02 2.94 16 43 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 44 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 45 H 0.06 3.16 6.36 -2.39 -0.02 3.15 16 46 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 47 H 0.25 13.00 8.31 -92.71 -0.77 12.23 16 Total: -1.00 -64.42 376.39 2.33 -62.08 By element: Atomic # 1 Polarization: 32.61 SS G_CDS: 0.25 Total: 32.87 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: 5.57 Total: 16.88 kcal Atomic # 7 Polarization: -99.43 SS G_CDS: -3.49 Total: -102.93 kcal Atomic # 8 Polarization: -50.70 SS G_CDS: -2.02 Total: -52.73 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -64.42 2.33 -62.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733706147.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.482 kcal (2) G-P(sol) polarization free energy of solvation -64.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds