Wall clock time and date at job start Tue Mar 31 2020 18:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47147 * 2 1 4 4 O 1.42894 * 109.47432 * 120.00055 * 2 1 3 5 5 C 1.35905 * 117.00322 * 275.22832 * 4 2 1 6 6 C 1.38734 * 120.05262 * 4.66212 * 5 4 2 7 7 C 1.38141 * 119.93869 * 179.74717 * 6 5 4 8 8 C 1.38266 * 120.06153 * 0.50695 * 7 6 5 9 9 C 1.38267 * 120.10678 * 359.77123 * 8 7 6 10 10 C 1.38141 * 120.05611 * 359.97280 * 9 8 7 11 11 C 1.50702 * 109.47387 * 240.00319 * 2 1 3 12 12 O 1.21282 * 119.99961 * 245.00128 * 11 2 1 13 13 N 1.34777 * 119.99651 * 65.00007 * 11 2 1 14 14 C 1.46505 * 119.99753 * 180.02562 * 13 11 2 15 15 C 1.52996 * 109.47065 * 179.97438 * 14 13 11 16 16 H 1.08995 * 109.71135 * 300.73275 * 15 14 13 17 17 C 1.53304 * 109.67991 * 180.19402 * 15 14 13 18 18 O 1.42963 * 109.26314 * 187.99831 * 17 15 14 19 19 C 1.42957 * 114.16750 * 62.55665 * 18 17 15 20 20 C 1.53304 * 109.22524 * 297.42230 * 19 18 17 21 21 N 1.47152 * 108.38564 * 52.29873 * 20 19 18 22 22 C 1.36927 * 120.98072 * 129.48259 * 21 20 19 23 23 H 1.08008 * 119.99633 * 210.76621 * 22 21 20 24 24 C 1.38805 * 120.00332 * 30.76540 * 22 21 20 25 25 N 1.31619 * 120.00318 * 10.33670 * 24 22 21 26 26 Si 1.86807 * 120.00140 * 190.34090 * 24 22 21 27 27 H 1.48500 * 109.47360 * 59.99516 * 26 24 22 28 28 H 1.48494 * 109.47299 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.46591 * 299.99828 * 26 24 22 30 30 H 1.09003 * 109.47521 * 299.99668 * 1 2 3 31 31 H 1.09003 * 109.47085 * 59.99744 * 1 2 3 32 32 H 1.08998 * 109.47182 * 179.97438 * 1 2 3 33 33 H 1.07996 * 120.02765 * 0.02562 * 6 5 4 34 34 H 1.08004 * 119.97087 * 180.27517 * 7 6 5 35 35 H 1.07998 * 119.94535 * 179.74445 * 8 7 6 36 36 H 1.08001 * 119.97074 * 179.97438 * 9 8 7 37 37 H 1.08008 * 120.02390 * 180.02562 * 10 9 8 38 38 H 0.96996 * 120.00681 * 359.97438 * 13 11 2 39 39 H 1.08998 * 109.47041 * 59.99394 * 14 13 11 40 40 H 1.09000 * 109.46618 * 299.99875 * 14 13 11 41 41 H 1.08996 * 109.50797 * 68.05301 * 17 15 14 42 42 H 1.08996 * 109.51494 * 307.94979 * 17 15 14 43 43 H 1.09004 * 109.51499 * 57.34150 * 19 18 17 44 44 H 1.09000 * 109.51869 * 177.49174 * 19 18 17 45 45 H 1.08999 * 109.68528 * 172.02502 * 20 19 18 46 46 H 1.08999 * 109.67656 * 292.57473 * 20 19 18 47 47 H 0.96995 * 120.00513 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.1080 0.0614 2.3053 6 6 1.6662 1.3763 2.3252 7 6 1.7659 2.1197 3.4853 8 6 2.3150 1.5576 4.6230 9 6 2.7614 0.2491 4.6040 10 6 2.6591 -0.5001 3.4479 11 6 2.0324 -0.7103 -1.2305 12 8 2.6530 -1.7466 -1.1215 13 7 1.7919 -0.1940 -2.4520 14 6 2.2798 -0.8848 -3.6483 15 6 1.8747 -0.0948 -4.8943 16 1 0.7893 -0.0031 -4.9345 17 6 2.3788 -0.8162 -6.1495 18 8 2.1616 0.0163 -7.2912 19 6 2.8768 1.2537 -7.2579 20 6 2.3974 2.0817 -6.0601 21 7 2.4833 1.2445 -4.8530 22 6 3.1114 1.6980 -3.7240 23 1 3.6059 1.0005 -3.0640 24 6 3.1127 3.0541 -3.4276 25 7 2.3464 3.8778 -4.1107 26 14 4.2022 3.7100 -2.0592 27 1 5.6228 3.4094 -2.3703 28 1 4.0215 5.1794 -1.9439 29 1 3.8288 3.0627 -0.7760 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.2406 1.8170 1.4358 34 1 1.4180 3.1420 3.5026 35 1 2.3958 2.1418 5.5277 36 1 3.1903 -0.1876 5.4938 37 1 3.0076 -1.5223 3.4338 38 1 1.2952 0.6346 -2.5392 39 1 1.8449 -1.8832 -3.6940 40 1 3.3661 -0.9634 -3.6047 41 1 1.8360 -1.7532 -6.2736 42 1 3.4440 -1.0234 -6.0473 43 1 3.9440 1.0549 -7.1592 44 1 2.6923 1.8058 -8.1794 45 1 3.0320 2.9602 -5.9435 46 1 1.3648 2.3926 -6.2186 47 1 2.3476 4.8254 -3.9038 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733706149.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:30 Heat of formation + Delta-G solvation = -58.400392 kcal Electronic energy + Delta-G solvation = -29853.968897 eV Core-core repulsion = 25810.408643 eV Total energy + Delta-G solvation = -4043.560254 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.48150 -39.23797 -38.38504 -37.18263 -35.35189 -33.70443 -32.46672 -31.36722 -30.79849 -30.36833 -29.59300 -27.29498 -25.85136 -24.28898 -23.51535 -22.80006 -22.17265 -21.53640 -19.92848 -19.59659 -18.35908 -17.41515 -16.47116 -16.17413 -15.99723 -15.73117 -15.44192 -15.38349 -14.75224 -14.65385 -14.44926 -14.33727 -13.91543 -13.81013 -13.55852 -13.44420 -13.10193 -12.99179 -12.77694 -12.50526 -12.36547 -11.92141 -11.76533 -11.61327 -11.60545 -11.15091 -10.99957 -10.94432 -10.82551 -10.76051 -10.47564 -10.33319 -10.11315 -9.72626 -9.44104 -9.05276 -9.02172 -8.75549 -8.39537 -8.19933 -6.81327 -5.98309 -3.48369 1.29051 1.41100 2.83070 2.99173 3.21086 3.29324 3.32927 3.75713 3.90145 4.26530 4.48222 4.72569 4.84596 4.88288 4.95795 5.02947 5.08917 5.14111 5.19245 5.31824 5.36660 5.50958 5.55486 5.62492 5.66113 5.68766 5.79586 5.95603 5.96318 6.01619 6.03826 6.11154 6.17011 6.28310 6.28933 6.36443 6.46889 6.47368 6.68291 6.72039 6.96039 7.02062 7.41065 7.43993 7.61677 7.81892 8.05116 8.21326 8.65913 8.97939 9.58188 10.17266 11.07773 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014697 B = 0.003678 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.649477 B = 7611.538846 C = 8894.321801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.065 3.935 3 H 0.101 0.899 4 O -0.285 6.285 5 C 0.135 3.865 6 C -0.211 4.211 7 C -0.080 4.080 8 C -0.165 4.165 9 C -0.083 4.083 10 C -0.153 4.153 11 C 0.515 3.485 12 O -0.540 6.540 13 N -0.689 5.689 14 C 0.137 3.863 15 C 0.125 3.875 16 H 0.043 0.957 17 C 0.056 3.944 18 O -0.392 6.392 19 C 0.034 3.966 20 C 0.144 3.856 21 N -0.592 5.592 22 C -0.257 4.257 23 H 0.073 0.927 24 C 0.010 3.990 25 N -0.899 5.899 26 Si 0.894 3.106 27 H -0.282 1.282 28 H -0.288 1.288 29 H -0.281 1.281 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.132 0.868 34 H 0.124 0.876 35 H 0.121 0.879 36 H 0.127 0.873 37 H 0.131 0.869 38 H 0.415 0.585 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.047 0.953 43 H 0.041 0.959 44 H 0.080 0.920 45 H 0.094 0.906 46 H 0.029 0.971 47 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.578 -4.087 8.890 10.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.005 3.995 3 H 0.118 0.882 4 O -0.197 6.197 5 C 0.089 3.911 6 C -0.230 4.230 7 C -0.098 4.098 8 C -0.183 4.183 9 C -0.101 4.101 10 C -0.172 4.172 11 C 0.299 3.701 12 O -0.417 6.417 13 N -0.342 5.342 14 C 0.013 3.987 15 C 0.018 3.982 16 H 0.060 0.940 17 C -0.023 4.023 18 O -0.311 6.311 19 C -0.044 4.044 20 C 0.018 3.982 21 N -0.317 5.317 22 C -0.386 4.386 23 H 0.090 0.910 24 C -0.189 4.189 25 N -0.542 5.542 26 Si 0.724 3.276 27 H -0.208 1.208 28 H -0.214 1.214 29 H -0.208 1.208 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.150 0.850 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.145 0.855 37 H 0.149 0.851 38 H 0.254 0.746 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.101 0.899 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.098 0.902 45 H 0.112 0.888 46 H 0.047 0.953 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.233 -4.884 8.780 10.555 hybrid contribution 0.517 1.353 0.787 1.649 sum -2.717 -3.531 9.567 10.553 Atomic orbital electron populations 1.22306 0.92758 1.04036 1.03941 1.22249 0.95656 0.97538 0.84078 0.88163 1.86188 1.80762 1.37084 1.15684 1.19131 0.94770 0.90340 0.86820 1.21415 1.06976 0.94329 1.00266 1.20963 0.97157 0.99391 0.92251 1.21034 1.02707 0.95873 0.98663 1.20938 0.98067 0.94047 0.97049 1.20459 1.04000 1.01452 0.91250 1.19842 0.80604 0.85385 0.84244 1.90680 1.40740 1.23705 1.86613 1.45857 1.56432 1.27697 1.04219 1.21200 0.99910 0.94111 0.83451 1.21436 0.96511 0.87991 0.92234 0.93994 1.22859 0.99871 0.92827 0.86764 1.87805 1.70651 1.31171 1.41430 1.23362 0.95035 0.85531 1.00435 1.21433 0.99767 0.93731 0.83223 1.44091 1.64569 1.12077 1.11009 1.19191 1.27152 0.91466 1.00833 0.90986 1.25124 0.98226 0.97251 0.98332 1.69956 1.38831 1.03459 1.42003 0.86508 0.81090 0.77997 0.82041 1.20810 1.21383 1.20759 0.90936 0.89871 0.90868 0.85037 0.85818 0.86096 0.85517 0.85146 0.74648 0.92067 0.91288 0.89857 0.93464 0.94107 0.90210 0.88815 0.95254 0.93313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.18 9.13 37.16 0.34 -1.84 16 2 C 0.06 1.03 2.64 -27.88 -0.07 0.96 16 3 H 0.10 1.61 6.28 -51.92 -0.33 1.29 16 4 O -0.28 -4.88 9.34 -39.30 -0.37 -5.25 16 5 C 0.14 2.05 6.60 -39.22 -0.26 1.79 16 6 C -0.21 -2.92 8.25 -39.43 -0.33 -3.24 16 7 C -0.08 -0.95 10.04 -39.61 -0.40 -1.35 16 8 C -0.16 -1.79 10.04 -39.56 -0.40 -2.19 16 9 C -0.08 -0.92 10.04 -39.61 -0.40 -1.32 16 10 C -0.15 -2.04 9.99 -39.44 -0.39 -2.43 16 11 C 0.52 9.62 7.18 -10.98 -0.08 9.54 16 12 O -0.54 -11.81 16.51 -14.30 -0.24 -12.04 16 13 N -0.69 -12.41 3.75 -60.29 -0.23 -12.64 16 14 C 0.14 2.45 4.44 -4.04 -0.02 2.43 16 15 C 0.13 2.35 3.20 -67.41 -0.22 2.13 16 16 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 17 C 0.06 0.96 6.28 37.31 0.23 1.19 16 18 O -0.39 -7.42 10.74 -35.23 -0.38 -7.80 16 19 C 0.03 0.64 6.98 37.31 0.26 0.90 16 20 C 0.14 3.17 5.38 -3.53 -0.02 3.15 16 21 N -0.59 -13.13 3.04 -164.28 -0.50 -13.63 16 22 C -0.26 -6.14 7.12 -15.07 -0.11 -6.24 16 23 H 0.07 1.76 5.79 -52.48 -0.30 1.46 16 24 C 0.01 0.26 5.07 -17.43 -0.09 0.17 16 25 N -0.90 -23.33 11.08 55.49 0.61 -22.71 16 26 Si 0.89 20.26 29.57 -169.99 -5.03 15.23 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 28 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 29 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 30 H 0.07 0.81 6.95 -51.93 -0.36 0.45 16 31 H 0.08 0.97 7.92 -51.93 -0.41 0.56 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.13 1.73 5.45 -52.49 -0.29 1.45 16 34 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 35 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.13 1.61 8.06 -52.48 -0.42 1.19 16 38 H 0.42 7.60 7.16 -40.82 -0.29 7.31 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.07 1.35 7.54 -51.93 -0.39 0.96 16 41 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.09 2.28 6.28 -51.93 -0.33 1.95 16 46 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 LS Contribution 376.77 15.07 5.68 5.68 Total: -1.00 -29.51 376.77 -9.28 -38.79 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -6.91 Total: 10.72 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: -1.94 Total: 3.64 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: -0.11 Total: -48.98 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.98 Total: -25.09 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.03 Total: 15.23 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.51 -9.28 -38.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733706149.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.607 kcal (2) G-P(sol) polarization free energy of solvation -29.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds