Wall clock time and date at job start Tue Mar 31 2020 18:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47147 * 2 1 4 4 O 1.42894 * 109.47432 * 120.00055 * 2 1 3 5 5 C 1.35905 * 117.00322 * 275.22832 * 4 2 1 6 6 C 1.38734 * 120.05262 * 4.66212 * 5 4 2 7 7 C 1.38141 * 119.93869 * 179.74717 * 6 5 4 8 8 C 1.38266 * 120.06153 * 0.50695 * 7 6 5 9 9 C 1.38267 * 120.10678 * 359.77123 * 8 7 6 10 10 C 1.38141 * 120.05611 * 359.97280 * 9 8 7 11 11 C 1.50702 * 109.47387 * 240.00319 * 2 1 3 12 12 O 1.21282 * 119.99961 * 245.00128 * 11 2 1 13 13 N 1.34777 * 119.99651 * 65.00007 * 11 2 1 14 14 C 1.46505 * 119.99753 * 180.02562 * 13 11 2 15 15 C 1.52996 * 109.47065 * 179.97438 * 14 13 11 16 16 H 1.08995 * 109.71135 * 300.73275 * 15 14 13 17 17 C 1.53304 * 109.67991 * 180.19402 * 15 14 13 18 18 O 1.42963 * 109.26314 * 187.99831 * 17 15 14 19 19 C 1.42957 * 114.16750 * 62.55665 * 18 17 15 20 20 C 1.53304 * 109.22524 * 297.42230 * 19 18 17 21 21 N 1.47152 * 108.38564 * 52.29873 * 20 19 18 22 22 C 1.36927 * 120.98072 * 129.48259 * 21 20 19 23 23 H 1.08008 * 119.99633 * 210.76621 * 22 21 20 24 24 C 1.38805 * 120.00332 * 30.76540 * 22 21 20 25 25 N 1.31619 * 120.00318 * 10.33670 * 24 22 21 26 26 Si 1.86807 * 120.00140 * 190.34090 * 24 22 21 27 27 H 1.48500 * 109.47360 * 59.99516 * 26 24 22 28 28 H 1.48494 * 109.47299 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.46591 * 299.99828 * 26 24 22 30 30 H 1.09003 * 109.47521 * 299.99668 * 1 2 3 31 31 H 1.09003 * 109.47085 * 59.99744 * 1 2 3 32 32 H 1.08998 * 109.47182 * 179.97438 * 1 2 3 33 33 H 1.07996 * 120.02765 * 0.02562 * 6 5 4 34 34 H 1.08004 * 119.97087 * 180.27517 * 7 6 5 35 35 H 1.07998 * 119.94535 * 179.74445 * 8 7 6 36 36 H 1.08001 * 119.97074 * 179.97438 * 9 8 7 37 37 H 1.08008 * 120.02390 * 180.02562 * 10 9 8 38 38 H 0.96996 * 120.00681 * 359.97438 * 13 11 2 39 39 H 1.08998 * 109.47041 * 59.99394 * 14 13 11 40 40 H 1.09000 * 109.46618 * 299.99875 * 14 13 11 41 41 H 1.08996 * 109.50797 * 68.05301 * 17 15 14 42 42 H 1.08996 * 109.51494 * 307.94979 * 17 15 14 43 43 H 1.09004 * 109.51499 * 57.34150 * 19 18 17 44 44 H 1.09000 * 109.51869 * 177.49174 * 19 18 17 45 45 H 1.08999 * 109.68528 * 172.02502 * 20 19 18 46 46 H 1.08999 * 109.67656 * 292.57473 * 20 19 18 47 47 H 0.96995 * 120.00513 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.1080 0.0614 2.3053 6 6 1.6662 1.3763 2.3252 7 6 1.7659 2.1197 3.4853 8 6 2.3150 1.5576 4.6230 9 6 2.7614 0.2491 4.6040 10 6 2.6591 -0.5001 3.4479 11 6 2.0324 -0.7103 -1.2305 12 8 2.6530 -1.7466 -1.1215 13 7 1.7919 -0.1940 -2.4520 14 6 2.2798 -0.8848 -3.6483 15 6 1.8747 -0.0948 -4.8943 16 1 0.7893 -0.0031 -4.9345 17 6 2.3788 -0.8162 -6.1495 18 8 2.1616 0.0163 -7.2912 19 6 2.8768 1.2537 -7.2579 20 6 2.3974 2.0817 -6.0601 21 7 2.4833 1.2445 -4.8530 22 6 3.1114 1.6980 -3.7240 23 1 3.6059 1.0005 -3.0640 24 6 3.1127 3.0541 -3.4276 25 7 2.3464 3.8778 -4.1107 26 14 4.2022 3.7100 -2.0592 27 1 5.6228 3.4094 -2.3703 28 1 4.0215 5.1794 -1.9439 29 1 3.8288 3.0627 -0.7760 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.2406 1.8170 1.4358 34 1 1.4180 3.1420 3.5026 35 1 2.3958 2.1418 5.5277 36 1 3.1903 -0.1876 5.4938 37 1 3.0076 -1.5223 3.4338 38 1 1.2952 0.6346 -2.5392 39 1 1.8449 -1.8832 -3.6940 40 1 3.3661 -0.9634 -3.6047 41 1 1.8360 -1.7532 -6.2736 42 1 3.4440 -1.0234 -6.0473 43 1 3.9440 1.0549 -7.1592 44 1 2.6923 1.8058 -8.1794 45 1 3.0320 2.9602 -5.9435 46 1 1.3648 2.3926 -6.2186 47 1 2.3476 4.8254 -3.9038 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733706149.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:29 Heat of formation + Delta-G solvation = -75.496988 kcal Electronic energy + Delta-G solvation = -29854.710261 eV Core-core repulsion = 25810.408643 eV Total energy + Delta-G solvation = -4044.301618 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.69219 -40.62012 -39.85153 -38.30295 -36.94331 -35.38611 -33.83363 -32.86542 -32.07708 -31.65250 -30.59863 -29.01772 -27.28967 -25.53630 -25.21485 -23.84730 -23.42971 -22.84397 -21.48327 -21.08892 -19.45900 -18.94755 -18.03196 -17.59847 -17.43972 -16.94596 -16.73709 -16.61279 -16.27005 -16.06533 -16.01559 -15.56847 -15.30648 -15.28360 -14.99764 -14.68367 -14.46980 -14.30964 -14.11726 -13.76425 -13.47730 -13.36160 -13.12393 -12.94890 -12.81909 -12.75273 -12.53121 -12.48677 -12.18856 -12.10888 -12.00880 -11.86504 -11.77926 -11.31699 -10.95097 -10.63520 -10.57360 -9.98664 -9.96680 -9.22378 -8.63730 -7.88638 -5.39403 0.35201 0.44023 1.37079 1.44378 1.47433 1.49413 1.62380 2.41350 2.61189 2.81059 3.03283 3.26681 3.41896 3.53626 3.71596 3.84191 3.89785 3.96874 4.01062 4.20946 4.24953 4.32001 4.37448 4.47545 4.47692 4.55653 4.58816 4.62261 4.63250 4.66225 4.72598 4.74632 5.00082 5.01749 5.05565 5.11102 5.30371 5.33132 5.44633 5.45999 5.56108 5.63780 5.66721 5.81320 6.28953 6.31601 6.36830 6.57080 7.09278 7.17240 7.75083 8.31089 9.15217 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014697 B = 0.003678 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.649477 B = 7611.538846 C = 8894.321801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.068 3.932 3 H 0.096 0.904 4 O -0.309 6.309 5 C 0.104 3.896 6 C -0.226 4.226 7 C -0.087 4.087 8 C -0.159 4.159 9 C -0.079 4.079 10 C -0.169 4.169 11 C 0.513 3.487 12 O -0.576 6.576 13 N -0.685 5.685 14 C 0.142 3.858 15 C 0.127 3.873 16 H 0.043 0.957 17 C 0.057 3.943 18 O -0.397 6.397 19 C 0.045 3.955 20 C 0.149 3.851 21 N -0.606 5.606 22 C -0.244 4.244 23 H 0.066 0.934 24 C -0.026 4.026 25 N -0.922 5.922 26 Si 0.937 3.063 27 H -0.291 1.291 28 H -0.291 1.291 29 H -0.276 1.276 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.131 0.869 34 H 0.145 0.855 35 H 0.153 0.847 36 H 0.159 0.841 37 H 0.131 0.869 38 H 0.415 0.585 39 H 0.084 0.916 40 H 0.050 0.950 41 H 0.119 0.881 42 H 0.048 0.952 43 H 0.042 0.958 44 H 0.104 0.896 45 H 0.067 0.933 46 H 0.009 0.991 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.950 -4.370 10.029 11.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.009 3.991 3 H 0.114 0.886 4 O -0.223 6.223 5 C 0.059 3.941 6 C -0.244 4.244 7 C -0.105 4.105 8 C -0.177 4.177 9 C -0.097 4.097 10 C -0.188 4.188 11 C 0.299 3.701 12 O -0.456 6.456 13 N -0.337 5.337 14 C 0.018 3.982 15 C 0.021 3.979 16 H 0.061 0.939 17 C -0.022 4.022 18 O -0.315 6.315 19 C -0.033 4.033 20 C 0.024 3.976 21 N -0.332 5.332 22 C -0.374 4.374 23 H 0.083 0.917 24 C -0.224 4.224 25 N -0.568 5.568 26 Si 0.767 3.233 27 H -0.218 1.218 28 H -0.217 1.217 29 H -0.202 1.202 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.092 0.908 33 H 0.148 0.852 34 H 0.163 0.837 35 H 0.171 0.829 36 H 0.176 0.824 37 H 0.149 0.851 38 H 0.252 0.748 39 H 0.102 0.898 40 H 0.069 0.931 41 H 0.137 0.863 42 H 0.066 0.934 43 H 0.060 0.940 44 H 0.122 0.878 45 H 0.085 0.915 46 H 0.027 0.973 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.616 -5.176 9.916 11.756 hybrid contribution 0.657 1.409 0.492 1.631 sum -2.959 -3.767 10.408 11.458 Atomic orbital electron populations 1.22266 0.90226 1.04441 1.05139 1.22219 0.97497 0.96470 0.82942 0.88604 1.86134 1.81622 1.38113 1.16401 1.19449 0.96763 0.91196 0.86697 1.21540 1.07559 0.94124 1.01202 1.21318 0.96890 1.00320 0.91930 1.21469 1.00959 0.95924 0.99374 1.21338 0.97089 0.94086 0.97168 1.20725 1.04324 1.02018 0.91707 1.20329 0.79789 0.84971 0.85031 1.90650 1.42416 1.25407 1.87166 1.45853 1.56013 1.27471 1.04366 1.21180 0.98883 0.95076 0.83092 1.21556 0.96286 0.86430 0.93603 0.93923 1.22991 1.00469 0.93520 0.85216 1.87810 1.70684 1.31018 1.41994 1.23228 0.94865 0.85328 0.99843 1.21255 0.98040 0.93642 0.84687 1.44286 1.64866 1.13305 1.10698 1.19201 1.26194 0.91195 1.00791 0.91672 1.25521 0.99358 0.97624 0.99850 1.70062 1.40263 1.03190 1.43246 0.85831 0.79386 0.77287 0.80841 1.21821 1.21713 1.20220 0.89425 0.88908 0.90812 0.85153 0.83675 0.82916 0.82376 0.85075 0.74760 0.89794 0.93149 0.86340 0.93408 0.94007 0.87778 0.91478 0.97287 0.93919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.04 9.13 71.98 0.66 -3.38 16 2 C 0.07 2.21 2.64 29.85 0.08 2.29 16 3 H 0.10 3.14 6.28 -2.38 -0.01 3.13 16 4 O -0.31 -10.82 9.34 -73.49 -0.69 -11.50 16 5 C 0.10 3.15 6.60 22.51 0.15 3.30 16 6 C -0.23 -6.09 8.25 22.37 0.18 -5.90 16 7 C -0.09 -1.89 10.04 22.25 0.22 -1.67 16 8 C -0.16 -2.99 10.04 22.28 0.22 -2.76 16 9 C -0.08 -1.56 10.04 22.25 0.22 -1.34 16 10 C -0.17 -4.41 9.99 22.36 0.22 -4.19 16 11 C 0.51 19.36 7.18 87.66 0.63 19.98 16 12 O -0.58 -25.61 16.51 15.96 0.26 -25.35 16 13 N -0.69 -24.64 3.75 -463.06 -1.74 -26.38 16 14 C 0.14 4.96 4.44 86.38 0.38 5.34 16 15 C 0.13 4.63 3.20 44.96 0.14 4.78 16 16 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 17 C 0.06 1.81 6.28 72.08 0.45 2.26 16 18 O -0.40 -14.14 10.74 -148.98 -1.60 -15.74 16 19 C 0.05 1.63 6.98 72.08 0.50 2.14 16 20 C 0.15 6.59 5.38 86.36 0.46 7.05 16 21 N -0.61 -26.79 3.04 -673.67 -2.05 -28.83 16 22 C -0.24 -11.71 7.12 84.03 0.60 -11.11 16 23 H 0.07 3.22 5.79 -2.91 -0.02 3.20 16 24 C -0.03 -1.32 5.07 84.86 0.43 -0.89 16 25 N -0.92 -48.63 11.08 21.65 0.24 -48.39 16 26 Si 0.94 42.02 29.57 68.60 2.03 44.05 16 27 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 28 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 29 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 30 H 0.09 1.90 6.95 -2.39 -0.02 1.88 16 31 H 0.09 2.08 7.92 -2.39 -0.02 2.07 16 32 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.13 3.41 5.45 -2.91 -0.02 3.39 16 34 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 35 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 36 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 37 H 0.13 3.25 8.06 -2.91 -0.02 3.22 16 38 H 0.41 15.17 7.16 -92.71 -0.66 14.51 16 39 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 40 H 0.05 1.97 7.54 -2.39 -0.02 1.95 16 41 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 42 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.10 3.24 8.14 -2.39 -0.02 3.23 16 45 H 0.07 3.32 6.28 -2.39 -0.01 3.31 16 46 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 47 H 0.25 13.11 8.31 -92.71 -0.77 12.34 16 Total: -1.00 -64.23 376.77 2.35 -61.88 By element: Atomic # 1 Polarization: 34.05 SS G_CDS: 0.32 Total: 34.37 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: 5.57 Total: 15.90 kcal Atomic # 7 Polarization: -100.06 SS G_CDS: -3.54 Total: -103.61 kcal Atomic # 8 Polarization: -50.57 SS G_CDS: -2.02 Total: -52.60 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -64.23 2.35 -61.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733706149.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.619 kcal (2) G-P(sol) polarization free energy of solvation -64.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds