Wall clock time and date at job start Tue Mar 31 2020 17:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47490 * 2 1 4 4 C 1.53007 * 109.46913 * 239.99924 * 2 1 3 5 5 N 1.46498 * 109.47196 * 185.00339 * 4 2 1 6 6 C 1.34780 * 119.99835 * 180.02562 * 5 4 2 7 7 O 1.21273 * 120.00019 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99478 * 179.97438 * 6 5 4 9 9 C 1.52998 * 109.46684 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.70536 * 55.00301 * 9 8 6 11 11 C 1.53466 * 109.70705 * 175.58407 * 9 8 6 12 12 O 1.43179 * 108.24124 * 179.38959 * 11 9 8 13 13 C 1.36110 * 116.71751 * 313.81795 * 12 11 9 14 14 C 1.38704 * 119.38549 * 197.14849 * 13 12 11 15 15 C 1.38197 * 120.06273 * 180.18370 * 14 13 12 16 16 C 1.38251 * 120.11446 * 359.97438 * 15 14 13 17 17 C 1.38193 * 120.11377 * 359.94508 * 16 15 14 18 18 C 1.38707 * 120.06780 * 0.02562 * 17 16 15 19 19 O 1.36104 * 119.39760 * 180.15081 * 18 17 16 20 20 N 1.46498 * 109.47138 * 120.00298 * 2 1 3 21 21 C 1.46499 * 120.00018 * 59.99781 * 20 2 1 22 22 C 1.36931 * 120.00158 * 239.99599 * 20 2 1 23 23 H 1.08000 * 120.00270 * 324.50960 * 22 20 2 24 24 C 1.38817 * 120.00085 * 144.50812 * 22 20 2 25 25 N 1.31616 * 119.99651 * 157.63876 * 24 22 20 26 26 Si 1.86795 * 120.00117 * 337.63780 * 24 22 20 27 27 H 1.48505 * 109.47038 * 95.57128 * 26 24 22 28 28 H 1.48500 * 109.47327 * 215.57673 * 26 24 22 29 29 H 1.48506 * 109.47039 * 335.57656 * 26 24 22 30 30 H 1.09004 * 109.47106 * 59.99616 * 1 2 3 31 31 H 1.08993 * 109.47490 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47062 * 300.00352 * 1 2 3 33 33 H 1.09001 * 109.46838 * 65.00418 * 4 2 1 34 34 H 1.09003 * 109.47079 * 305.00502 * 4 2 1 35 35 H 0.97004 * 119.99922 * 359.97438 * 5 4 2 36 36 H 1.09001 * 109.47151 * 60.00395 * 8 6 5 37 37 H 1.08994 * 109.47387 * 299.99787 * 8 6 5 38 38 H 1.09008 * 109.71097 * 299.12218 * 11 9 8 39 39 H 1.09000 * 109.71642 * 59.75314 * 11 9 8 40 40 H 1.08003 * 119.96876 * 0.16918 * 14 13 12 41 41 H 1.08001 * 119.93990 * 179.97438 * 15 14 13 42 42 H 1.07998 * 119.94435 * 179.97438 * 16 15 14 43 43 H 1.08002 * 119.96859 * 180.02562 * 17 16 15 44 44 H 1.08994 * 109.47796 * 87.82214 * 21 20 2 45 45 H 1.09004 * 109.47032 * 207.82749 * 21 20 2 46 46 H 1.09006 * 109.47209 * 327.81946 * 21 20 2 47 47 H 0.97004 * 119.99566 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 3.5000 -0.8265 -1.1907 6 6 4.1729 -1.4285 -2.1913 7 8 3.5698 -1.8834 -3.1400 8 6 5.6749 -1.5362 -2.1312 9 6 6.1848 -2.2576 -3.3804 10 1 5.8233 -1.7470 -4.2729 11 6 7.7194 -2.2731 -3.3788 12 8 8.1617 -2.9663 -4.5509 13 6 7.5421 -4.1443 -4.8356 14 6 8.1386 -5.0306 -5.7202 15 6 7.5199 -6.2289 -6.0222 16 6 6.3056 -6.5478 -5.4434 17 6 5.7068 -5.6699 -4.5600 18 6 6.3226 -4.4658 -4.2520 19 8 5.7222 -3.6127 -3.3779 20 7 2.0183 -0.6907 1.1961 21 6 1.6644 -2.0932 1.4279 22 6 2.8056 -0.0253 2.0975 23 1 3.5191 0.7086 1.7529 24 6 2.6866 -0.2940 3.4542 25 7 3.6839 -0.0217 4.2688 26 14 1.1113 -1.0419 4.1236 27 1 1.2646 -2.5159 4.2188 28 1 0.8327 -0.4850 5.4717 29 1 -0.0160 -0.7194 3.2122 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.7516 -0.1583 -2.1370 34 1 1.6052 -1.7198 -1.2952 35 1 3.9824 -0.4623 -0.4320 36 1 5.9635 -2.0993 -1.2437 37 1 6.1092 -0.5376 -2.0851 38 1 8.0974 -1.2507 -3.3909 39 1 8.0810 -2.7889 -2.4893 40 1 9.0873 -4.7839 -6.1736 41 1 7.9860 -6.9174 -6.7116 42 1 5.8244 -7.4849 -5.6817 43 1 4.7583 -5.9216 -4.1089 44 1 2.3944 -2.7379 0.9387 45 1 1.6615 -2.2950 2.4991 46 1 0.6735 -2.2904 1.0185 47 1 3.6009 -0.2098 5.2168 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734039187.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:10 Heat of formation + Delta-G solvation = -56.418439 kcal Electronic energy + Delta-G solvation = -29018.186770 eV Core-core repulsion = 24974.712460 eV Total energy + Delta-G solvation = -4043.474310 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.41698 -39.41543 -37.84646 -37.34928 -36.89016 -33.83628 -33.06916 -32.09610 -30.79343 -30.25780 -29.33368 -27.61174 -26.27106 -25.58159 -23.86392 -23.18124 -22.79961 -20.82214 -20.08497 -19.44443 -18.83601 -17.71324 -17.09633 -16.98516 -16.56895 -15.81385 -15.75584 -15.25224 -15.21842 -15.10013 -14.68966 -14.46433 -14.16739 -13.97574 -13.85811 -13.46812 -13.31585 -12.98799 -12.69062 -12.52733 -12.31628 -12.26347 -12.08494 -11.98076 -11.86203 -11.57357 -11.36130 -11.27840 -11.05097 -10.91269 -10.54230 -10.53298 -10.17380 -10.02115 -9.66649 -9.54725 -8.77997 -8.63614 -8.57445 -8.17062 -6.97805 -6.10206 -3.50722 1.15490 1.18970 2.85279 2.94638 3.08034 3.25995 3.41844 3.45457 3.47255 3.59927 4.10823 4.44163 4.47612 4.49680 4.66378 4.82936 4.89541 4.93617 5.07366 5.13301 5.19006 5.20098 5.24959 5.33292 5.39671 5.42835 5.59556 5.75076 5.77998 5.93706 5.99753 6.00377 6.07099 6.12615 6.18783 6.31567 6.32502 6.47822 6.49162 6.64140 6.68767 6.76080 6.81908 6.94392 7.34238 7.91931 7.95862 8.21833 8.58213 8.85883 9.59993 10.00252 11.04923 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018022 B = 0.002533 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.244127 B =11049.378999 C =11226.280762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.156 3.844 3 H 0.078 0.922 4 C 0.110 3.890 5 N -0.707 5.707 6 C 0.511 3.489 7 O -0.546 6.546 8 C -0.137 4.137 9 C 0.072 3.928 10 H 0.092 0.908 11 C 0.025 3.975 12 O -0.307 6.307 13 C 0.043 3.957 14 C -0.115 4.115 15 C -0.124 4.124 16 C -0.116 4.116 17 C -0.115 4.115 18 C 0.063 3.937 19 O -0.287 6.287 20 N -0.604 5.604 21 C 0.111 3.889 22 C -0.274 4.274 23 H 0.081 0.919 24 C 0.036 3.964 25 N -0.899 5.899 26 Si 0.885 3.115 27 H -0.288 1.288 28 H -0.304 1.304 29 H -0.269 1.269 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.412 0.588 36 H 0.109 0.891 37 H 0.117 0.883 38 H 0.124 0.876 39 H 0.080 0.920 40 H 0.132 0.868 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.134 0.866 44 H 0.016 0.984 45 H 0.044 0.956 46 H 0.030 0.970 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.016 -6.634 -17.470 19.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.049 3.951 3 H 0.096 0.904 4 C -0.016 4.016 5 N -0.359 5.359 6 C 0.296 3.704 7 O -0.424 6.424 8 C -0.177 4.177 9 C 0.015 3.985 10 H 0.110 0.890 11 C -0.051 4.051 12 O -0.222 6.222 13 C -0.002 4.002 14 C -0.134 4.134 15 C -0.142 4.142 16 C -0.135 4.135 17 C -0.134 4.134 18 C 0.017 3.983 19 O -0.202 6.202 20 N -0.329 5.329 21 C -0.033 4.033 22 C -0.402 4.402 23 H 0.098 0.902 24 C -0.165 4.165 25 N -0.540 5.540 26 Si 0.717 3.283 27 H -0.217 1.217 28 H -0.233 1.233 29 H -0.194 1.194 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.249 0.751 36 H 0.127 0.873 37 H 0.135 0.865 38 H 0.142 0.858 39 H 0.098 0.902 40 H 0.150 0.850 41 H 0.147 0.853 42 H 0.148 0.852 43 H 0.152 0.848 44 H 0.034 0.966 45 H 0.062 0.938 46 H 0.049 0.951 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.641 -6.871 -17.906 20.296 hybrid contribution -0.721 -0.146 1.182 1.392 sum 5.920 -7.017 -16.724 19.078 Atomic orbital electron populations 1.22214 0.97527 1.01344 1.01125 1.20753 0.92306 0.96069 0.86019 0.90387 1.21878 0.79831 1.00948 0.98920 1.45894 1.08254 1.58546 1.23202 1.20196 0.89201 0.78165 0.82839 1.90694 1.70098 1.47812 1.33830 1.21678 0.94802 1.02597 0.98621 1.22817 0.93182 0.82131 1.00391 0.88999 1.23725 0.94420 0.99232 0.87721 1.86288 1.59443 1.32149 1.44293 1.18956 0.91897 0.88481 1.00840 1.20410 1.00701 0.92836 0.99451 1.20871 0.95966 0.96296 1.01064 1.20912 0.95858 0.99505 0.97179 1.20516 1.00740 0.92613 0.99489 1.19023 0.91308 0.92924 0.95040 1.86449 1.59241 1.18990 1.55477 1.44150 1.59013 1.06575 1.23141 1.21280 0.96848 0.85936 0.99251 1.18754 1.13079 1.22344 0.86067 0.90155 1.25434 0.96885 0.98120 0.96108 1.69853 1.29827 1.49874 1.04420 0.86842 0.86369 0.77693 0.77443 1.21656 1.23255 1.19399 0.93315 0.93205 0.92135 0.92346 0.92364 0.75123 0.87261 0.86486 0.85771 0.90178 0.85034 0.85283 0.85226 0.84778 0.96624 0.93788 0.95103 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 9.17 37.16 0.34 -2.29 16 2 C 0.16 2.78 2.88 -67.93 -0.20 2.58 16 3 H 0.08 1.39 7.89 -51.93 -0.41 0.98 16 4 C 0.11 1.82 4.97 -4.04 -0.02 1.80 16 5 N -0.71 -11.36 5.39 -60.29 -0.32 -11.68 16 6 C 0.51 8.06 7.72 -10.98 -0.08 7.97 16 7 O -0.55 -10.46 15.46 -7.97 -0.12 -10.58 16 8 C -0.14 -1.59 5.43 -27.88 -0.15 -1.74 16 9 C 0.07 0.89 2.55 -26.49 -0.07 0.82 16 10 H 0.09 1.22 7.96 -51.93 -0.41 0.80 16 11 C 0.02 0.24 6.56 37.40 0.25 0.49 16 12 O -0.31 -3.77 10.42 -32.87 -0.34 -4.11 16 13 C 0.04 0.56 6.49 -39.14 -0.25 0.30 16 14 C -0.12 -1.23 9.96 -39.42 -0.39 -1.62 16 15 C -0.12 -1.15 10.04 -39.59 -0.40 -1.54 16 16 C -0.12 -1.15 10.04 -39.59 -0.40 -1.55 16 17 C -0.11 -1.43 9.96 -39.42 -0.39 -1.82 16 18 C 0.06 0.88 6.49 -39.14 -0.25 0.63 16 19 O -0.29 -4.39 9.36 -44.06 -0.41 -4.80 16 20 N -0.60 -12.98 1.88 -173.49 -0.33 -13.31 16 21 C 0.11 2.35 8.63 59.85 0.52 2.86 16 22 C -0.27 -6.92 9.58 -15.06 -0.14 -7.07 16 23 H 0.08 2.12 8.06 -52.49 -0.42 1.70 16 24 C 0.04 0.96 5.31 -17.43 -0.09 0.87 16 25 N -0.90 -25.98 13.97 55.49 0.78 -25.21 16 26 Si 0.89 21.59 24.94 -169.99 -4.24 17.35 16 27 H -0.29 -6.95 6.67 56.52 0.38 -6.57 16 28 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 29 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.80 6.67 -51.93 -0.35 0.45 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 1.04 7.84 -51.93 -0.41 0.63 16 35 H 0.41 6.72 7.89 -40.82 -0.32 6.39 16 36 H 0.11 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.12 0.84 8.14 -51.92 -0.42 0.42 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 41 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 42 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 43 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 44 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.04 1.01 3.10 -51.93 -0.16 0.85 16 46 H 0.03 0.58 6.43 -51.93 -0.33 0.25 16 47 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 379.60 15.07 5.72 5.72 Total: -1.00 -32.45 379.60 -8.07 -40.52 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -7.05 Total: 5.41 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -1.74 Total: 0.69 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: 0.12 Total: -50.20 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.88 Total: -19.49 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.24 Total: 17.35 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.45 -8.07 -40.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734039187.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.901 kcal (2) G-P(sol) polarization free energy of solvation -32.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds