Wall clock time and date at job start Tue Mar 31 2020 17:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47490 * 2 1 4 4 C 1.53007 * 109.46913 * 239.99924 * 2 1 3 5 5 N 1.46498 * 109.47196 * 185.00339 * 4 2 1 6 6 C 1.34780 * 119.99835 * 180.02562 * 5 4 2 7 7 O 1.21273 * 120.00019 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99478 * 179.97438 * 6 5 4 9 9 C 1.52998 * 109.46684 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.70536 * 55.00301 * 9 8 6 11 11 C 1.53466 * 109.70705 * 175.58407 * 9 8 6 12 12 O 1.43179 * 108.24124 * 179.38959 * 11 9 8 13 13 C 1.36110 * 116.71751 * 313.81795 * 12 11 9 14 14 C 1.38704 * 119.38549 * 197.14849 * 13 12 11 15 15 C 1.38197 * 120.06273 * 180.18370 * 14 13 12 16 16 C 1.38251 * 120.11446 * 359.97438 * 15 14 13 17 17 C 1.38193 * 120.11377 * 359.94508 * 16 15 14 18 18 C 1.38707 * 120.06780 * 0.02562 * 17 16 15 19 19 O 1.36104 * 119.39760 * 180.15081 * 18 17 16 20 20 N 1.46498 * 109.47138 * 120.00298 * 2 1 3 21 21 C 1.46499 * 120.00018 * 59.99781 * 20 2 1 22 22 C 1.36931 * 120.00158 * 239.99599 * 20 2 1 23 23 H 1.08000 * 120.00270 * 324.50960 * 22 20 2 24 24 C 1.38817 * 120.00085 * 144.50812 * 22 20 2 25 25 N 1.31616 * 119.99651 * 157.63876 * 24 22 20 26 26 Si 1.86795 * 120.00117 * 337.63780 * 24 22 20 27 27 H 1.48505 * 109.47038 * 95.57128 * 26 24 22 28 28 H 1.48500 * 109.47327 * 215.57673 * 26 24 22 29 29 H 1.48506 * 109.47039 * 335.57656 * 26 24 22 30 30 H 1.09004 * 109.47106 * 59.99616 * 1 2 3 31 31 H 1.08993 * 109.47490 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47062 * 300.00352 * 1 2 3 33 33 H 1.09001 * 109.46838 * 65.00418 * 4 2 1 34 34 H 1.09003 * 109.47079 * 305.00502 * 4 2 1 35 35 H 0.97004 * 119.99922 * 359.97438 * 5 4 2 36 36 H 1.09001 * 109.47151 * 60.00395 * 8 6 5 37 37 H 1.08994 * 109.47387 * 299.99787 * 8 6 5 38 38 H 1.09008 * 109.71097 * 299.12218 * 11 9 8 39 39 H 1.09000 * 109.71642 * 59.75314 * 11 9 8 40 40 H 1.08003 * 119.96876 * 0.16918 * 14 13 12 41 41 H 1.08001 * 119.93990 * 179.97438 * 15 14 13 42 42 H 1.07998 * 119.94435 * 179.97438 * 16 15 14 43 43 H 1.08002 * 119.96859 * 180.02562 * 17 16 15 44 44 H 1.08994 * 109.47796 * 87.82214 * 21 20 2 45 45 H 1.09004 * 109.47032 * 207.82749 * 21 20 2 46 46 H 1.09006 * 109.47209 * 327.81946 * 21 20 2 47 47 H 0.97004 * 119.99566 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 3.5000 -0.8265 -1.1907 6 6 4.1729 -1.4285 -2.1913 7 8 3.5698 -1.8834 -3.1400 8 6 5.6749 -1.5362 -2.1312 9 6 6.1848 -2.2576 -3.3804 10 1 5.8233 -1.7470 -4.2729 11 6 7.7194 -2.2731 -3.3788 12 8 8.1617 -2.9663 -4.5509 13 6 7.5421 -4.1443 -4.8356 14 6 8.1386 -5.0306 -5.7202 15 6 7.5199 -6.2289 -6.0222 16 6 6.3056 -6.5478 -5.4434 17 6 5.7068 -5.6699 -4.5600 18 6 6.3226 -4.4658 -4.2520 19 8 5.7222 -3.6127 -3.3779 20 7 2.0183 -0.6907 1.1961 21 6 1.6644 -2.0932 1.4279 22 6 2.8056 -0.0253 2.0975 23 1 3.5191 0.7086 1.7529 24 6 2.6866 -0.2940 3.4542 25 7 3.6839 -0.0217 4.2688 26 14 1.1113 -1.0419 4.1236 27 1 1.2646 -2.5159 4.2188 28 1 0.8327 -0.4850 5.4717 29 1 -0.0160 -0.7194 3.2122 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.7516 -0.1583 -2.1370 34 1 1.6052 -1.7198 -1.2952 35 1 3.9824 -0.4623 -0.4320 36 1 5.9635 -2.0993 -1.2437 37 1 6.1092 -0.5376 -2.0851 38 1 8.0974 -1.2507 -3.3909 39 1 8.0810 -2.7889 -2.4893 40 1 9.0873 -4.7839 -6.1736 41 1 7.9860 -6.9174 -6.7116 42 1 5.8244 -7.4849 -5.6817 43 1 4.7583 -5.9216 -4.1089 44 1 2.3944 -2.7379 0.9387 45 1 1.6615 -2.2950 2.4991 46 1 0.6735 -2.2904 1.0185 47 1 3.6009 -0.2098 5.2168 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734039187.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:09 Heat of formation + Delta-G solvation = -77.057660 kcal Electronic energy + Delta-G solvation = -29019.081754 eV Core-core repulsion = 24974.712460 eV Total energy + Delta-G solvation = -4044.369294 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.31503 -40.68340 -38.82434 -38.47414 -38.15940 -35.39104 -34.14159 -33.75477 -31.89124 -31.62067 -30.24724 -28.59323 -28.07526 -26.77335 -25.18574 -24.59317 -23.67682 -21.73308 -21.31470 -20.91268 -19.80875 -18.96424 -18.58704 -18.00945 -17.68982 -17.55941 -16.98669 -16.44185 -16.15649 -16.12951 -15.92499 -15.51859 -15.35665 -15.04858 -14.87216 -14.80085 -14.72896 -14.35403 -14.15708 -14.04376 -13.79353 -13.73596 -13.14215 -12.95632 -12.85851 -12.75275 -12.69663 -12.60109 -12.30324 -12.14057 -12.02434 -11.95798 -11.60299 -11.57189 -11.44193 -10.85518 -10.62171 -9.94610 -9.63359 -9.05921 -8.82315 -8.17565 -5.52860 0.30663 0.34050 1.31708 1.43515 1.52644 1.68966 2.03400 2.18584 2.33582 2.44080 2.75635 3.08809 3.20327 3.32674 3.54379 3.60848 3.78946 3.97902 4.04266 4.13727 4.24489 4.29612 4.34890 4.38624 4.42863 4.49289 4.49606 4.53902 4.61864 4.69721 4.71256 4.78861 4.84265 4.91454 4.94435 5.01954 5.21013 5.23309 5.24301 5.38508 5.51423 5.61024 5.73495 5.94385 5.95009 6.19170 6.43695 6.66060 6.96954 7.31418 7.63543 8.06753 9.01052 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018022 B = 0.002533 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.244127 B =11049.378999 C =11226.280762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.157 3.843 3 H 0.078 0.922 4 C 0.118 3.882 5 N -0.709 5.709 6 C 0.508 3.492 7 O -0.583 6.583 8 C -0.129 4.129 9 C 0.069 3.931 10 H 0.076 0.924 11 C 0.028 3.972 12 O -0.317 6.317 13 C 0.025 3.975 14 C -0.121 4.121 15 C -0.115 4.115 16 C -0.113 4.113 17 C -0.137 4.137 18 C 0.030 3.970 19 O -0.318 6.318 20 N -0.611 5.611 21 C 0.111 3.889 22 C -0.248 4.248 23 H 0.064 0.936 24 C -0.019 4.019 25 N -0.944 5.944 26 Si 0.937 3.063 27 H -0.286 1.286 28 H -0.317 1.317 29 H -0.258 1.258 30 H 0.079 0.921 31 H 0.051 0.949 32 H 0.046 0.954 33 H 0.072 0.928 34 H 0.047 0.953 35 H 0.411 0.589 36 H 0.114 0.886 37 H 0.156 0.844 38 H 0.159 0.841 39 H 0.085 0.915 40 H 0.151 0.849 41 H 0.166 0.834 42 H 0.158 0.842 43 H 0.127 0.873 44 H 0.016 0.984 45 H 0.026 0.974 46 H 0.054 0.946 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.238 -7.270 -19.344 21.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.051 3.949 3 H 0.096 0.904 4 C -0.008 4.008 5 N -0.360 5.360 6 C 0.295 3.705 7 O -0.463 6.463 8 C -0.168 4.168 9 C 0.012 3.988 10 H 0.094 0.906 11 C -0.047 4.047 12 O -0.232 6.232 13 C -0.020 4.020 14 C -0.139 4.139 15 C -0.133 4.133 16 C -0.131 4.131 17 C -0.156 4.156 18 C -0.015 4.015 19 O -0.233 6.233 20 N -0.336 5.336 21 C -0.033 4.033 22 C -0.377 4.377 23 H 0.081 0.919 24 C -0.216 4.216 25 N -0.589 5.589 26 Si 0.768 3.232 27 H -0.214 1.214 28 H -0.246 1.246 29 H -0.182 1.182 30 H 0.098 0.902 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.248 0.752 36 H 0.133 0.867 37 H 0.173 0.827 38 H 0.177 0.823 39 H 0.103 0.897 40 H 0.169 0.831 41 H 0.183 0.817 42 H 0.176 0.824 43 H 0.145 0.855 44 H 0.035 0.965 45 H 0.044 0.956 46 H 0.073 0.927 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.839 -7.510 -19.815 22.267 hybrid contribution -0.768 0.026 1.609 1.784 sum 6.071 -7.484 -18.206 20.599 Atomic orbital electron populations 1.22133 0.95701 1.01785 1.02010 1.20866 0.93640 0.95763 0.84647 0.90398 1.21740 0.80197 1.00234 0.98614 1.45948 1.08159 1.58606 1.23270 1.20859 0.90849 0.76947 0.81872 1.90677 1.71263 1.49231 1.35169 1.21738 0.91749 1.04747 0.98552 1.22891 0.94891 0.81113 0.99862 0.90604 1.23909 0.92543 1.00934 0.87358 1.86258 1.59538 1.32181 1.45190 1.19245 0.91944 0.89191 1.01629 1.20810 1.01439 0.92933 0.98738 1.21328 0.95313 0.96114 1.00506 1.21287 0.96042 0.99890 0.95839 1.20742 1.01017 0.93089 1.00719 1.19358 0.92403 0.93563 0.96150 1.86389 1.60468 1.20176 1.56272 1.44215 1.59037 1.06929 1.23384 1.21278 0.98228 0.85607 0.98198 1.18755 1.12114 1.20511 0.86352 0.91862 1.25949 0.98933 0.99937 0.96783 1.69957 1.31481 1.52991 1.04470 0.85995 0.83848 0.77011 0.76349 1.21431 1.24600 1.18193 0.90179 0.92966 0.93509 0.90990 0.93500 0.75219 0.86739 0.82655 0.82339 0.89689 0.83100 0.81671 0.82393 0.85510 0.96545 0.95554 0.92747 0.93076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.67 9.17 71.98 0.66 -4.01 16 2 C 0.16 5.31 2.88 44.99 0.13 5.43 16 3 H 0.08 2.65 7.89 -2.39 -0.02 2.63 16 4 C 0.12 3.72 4.97 86.38 0.43 4.15 16 5 N -0.71 -22.13 5.39 -463.05 -2.49 -24.63 16 6 C 0.51 15.80 7.72 87.66 0.68 16.47 16 7 O -0.58 -22.51 15.46 9.93 0.15 -22.35 16 8 C -0.13 -2.85 5.43 29.85 0.16 -2.69 16 9 C 0.07 1.71 2.55 30.75 0.08 1.78 16 10 H 0.08 2.06 7.96 -2.39 -0.02 2.04 16 11 C 0.03 0.52 6.56 72.14 0.47 0.99 16 12 O -0.32 -7.53 10.42 -82.59 -0.86 -8.39 16 13 C 0.02 0.63 6.49 22.56 0.15 0.77 16 14 C -0.12 -2.37 9.96 22.37 0.22 -2.15 16 15 C -0.11 -1.83 10.04 22.26 0.22 -1.60 16 16 C -0.11 -2.04 10.04 22.26 0.22 -1.82 16 17 C -0.14 -3.45 9.96 22.37 0.22 -3.23 16 18 C 0.03 0.87 6.49 22.56 0.15 1.02 16 19 O -0.32 -10.03 9.36 -71.80 -0.67 -10.71 16 20 N -0.61 -25.51 1.88 -702.78 -1.32 -26.83 16 21 C 0.11 4.53 8.63 127.77 1.10 5.63 16 22 C -0.25 -12.45 9.58 84.04 0.81 -11.64 16 23 H 0.06 3.36 8.06 -2.91 -0.02 3.34 16 24 C -0.02 -1.05 5.31 84.86 0.45 -0.60 16 25 N -0.94 -55.63 13.97 21.65 0.30 -55.33 16 26 Si 0.94 44.63 24.94 68.60 1.71 46.34 16 27 H -0.29 -13.38 6.67 99.48 0.66 -12.72 16 28 H -0.32 -15.60 7.11 99.48 0.71 -14.89 16 29 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 30 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.05 1.53 6.67 -2.39 -0.02 1.51 16 32 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.05 1.60 7.84 -2.39 -0.02 1.58 16 35 H 0.41 13.06 7.89 -92.71 -0.73 12.33 16 36 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.16 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.16 1.75 8.14 -2.38 -0.02 1.73 16 39 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 41 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 42 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 43 H 0.13 3.21 8.06 -2.91 -0.02 3.18 16 44 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.03 1.18 3.10 -2.38 -0.01 1.17 16 46 H 0.05 1.95 6.43 -2.38 -0.02 1.93 16 47 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -71.97 379.60 3.18 -68.79 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: 0.21 Total: 24.60 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: 6.15 Total: 8.51 kcal Atomic # 7 Polarization: -103.27 SS G_CDS: -3.52 Total: -106.79 kcal Atomic # 8 Polarization: -40.07 SS G_CDS: -1.38 Total: -41.45 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.71 Total: 46.34 kcal Total: -71.97 3.18 -68.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734039187.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.263 kcal (2) G-P(sol) polarization free energy of solvation -71.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds