Wall clock time and date at job start Tue Mar 31 2020 17:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46936 * 2 1 4 4 C 1.52997 * 109.47535 * 119.99865 * 2 1 3 5 5 N 1.46495 * 109.47643 * 174.99898 * 4 2 1 6 6 C 1.34773 * 120.00541 * 179.97438 * 5 4 2 7 7 O 1.21287 * 119.99877 * 0.02562 * 6 5 4 8 8 C 1.50695 * 120.00164 * 179.97438 * 6 5 4 9 9 C 1.53006 * 109.47308 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.73623 * 304.39932 * 9 8 6 11 11 C 1.53472 * 109.71002 * 183.79843 * 9 8 6 12 12 O 1.43176 * 108.23299 * 180.56965 * 11 9 8 13 13 C 1.36110 * 116.69658 * 46.25873 * 12 11 9 14 14 C 1.38705 * 119.39694 * 163.02184 * 13 12 11 15 15 C 1.38198 * 120.06584 * 180.02562 * 14 13 12 16 16 C 1.38251 * 120.11397 * 359.52789 * 15 14 13 17 17 C 1.38198 * 120.11153 * 0.32853 * 16 15 14 18 18 C 1.38701 * 120.06734 * 359.93082 * 17 16 15 19 19 O 1.36115 * 119.39593 * 179.81724 * 18 17 16 20 20 N 1.46498 * 109.47065 * 240.00060 * 2 1 3 21 21 C 1.46506 * 120.00072 * 299.99768 * 20 2 1 22 22 C 1.36934 * 120.00177 * 119.99781 * 20 2 1 23 23 H 1.08000 * 120.00267 * 22.82182 * 22 20 2 24 24 C 1.38814 * 120.00039 * 202.82229 * 22 20 2 25 25 N 1.31617 * 120.00214 * 11.58505 * 24 22 20 26 26 Si 1.86800 * 120.00038 * 191.58748 * 24 22 20 27 27 H 1.48500 * 109.47332 * 59.99752 * 26 24 22 28 28 H 1.48503 * 109.47386 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.47229 * 299.99997 * 26 24 22 30 30 H 1.08996 * 109.47672 * 59.99971 * 1 2 3 31 31 H 1.09003 * 109.46928 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47127 * 299.99950 * 1 2 3 33 33 H 1.08999 * 109.47318 * 54.99610 * 4 2 1 34 34 H 1.09000 * 109.47152 * 295.00047 * 4 2 1 35 35 H 0.97007 * 120.00013 * 0.02562 * 5 4 2 36 36 H 1.09001 * 109.47636 * 60.00641 * 8 6 5 37 37 H 1.09000 * 109.47503 * 300.00172 * 8 6 5 38 38 H 1.09001 * 109.70517 * 300.25808 * 11 9 8 39 39 H 1.08998 * 109.70755 * 60.88528 * 11 9 8 40 40 H 1.08001 * 119.96491 * 359.81463 * 14 13 12 41 41 H 1.07996 * 119.94088 * 179.80481 * 15 14 13 42 42 H 1.07994 * 119.94269 * 180.31682 * 16 15 14 43 43 H 1.07995 * 119.96731 * 179.97438 * 17 16 15 44 44 H 1.08992 * 109.47035 * 93.84808 * 21 20 2 45 45 H 1.08998 * 109.46888 * 213.85181 * 21 20 2 46 46 H 1.09006 * 109.46422 * 333.85016 * 21 20 2 47 47 H 0.97001 * 120.00153 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1905 6 6 4.1732 -1.4282 2.1911 7 8 3.5701 -1.8832 3.1400 8 6 5.6750 -1.5368 2.1304 9 6 6.1851 -2.2579 3.3797 10 1 5.8334 -1.7410 4.2725 11 6 7.7195 -2.2879 3.3698 12 8 8.1617 -2.9796 4.5428 13 6 7.5333 -4.1511 4.8352 14 6 8.1244 -5.0375 5.7234 15 6 7.4988 -6.2311 6.0297 16 6 6.2780 -6.5407 5.4596 17 6 5.6822 -5.6606 4.5761 18 6 6.3073 -4.4634 4.2602 19 8 5.7100 -3.6084 3.3856 20 7 2.0183 -0.6906 -1.1962 21 6 1.6644 -2.0932 -1.4280 22 6 2.8055 -0.0251 -2.0976 23 1 3.3665 0.8438 -1.7866 24 6 2.8825 -0.4673 -3.4112 25 7 2.0365 -1.3747 -3.8508 26 14 4.1867 0.2255 -4.5550 27 1 5.5342 -0.0610 -4.0005 28 1 4.0573 -0.4052 -5.8932 29 1 4.0053 1.6940 -4.6808 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6055 -1.7197 1.2952 34 1 1.7517 -0.1582 2.1369 35 1 3.9825 -0.4621 0.4318 36 1 6.1100 -0.5384 2.0838 37 1 5.9630 -2.1004 1.2430 38 1 8.0712 -2.8105 2.4802 39 1 8.1071 -1.2692 3.3757 40 1 9.0760 -4.7961 6.1734 41 1 7.9623 -6.9211 6.7191 42 1 5.7891 -7.4719 5.7049 43 1 4.7287 -5.9050 4.1318 44 1 0.7756 -2.1445 -2.0568 45 1 2.4916 -2.5991 -1.9260 46 1 1.4628 -2.5795 -0.4735 47 1 2.0905 -1.6839 -4.7686 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734039189.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:13 Heat of formation + Delta-G solvation = -61.024368 kcal Electronic energy + Delta-G solvation = -29018.732769 eV Core-core repulsion = 24975.058731 eV Total energy + Delta-G solvation = -4043.674038 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.41334 -39.36709 -37.82641 -37.32023 -36.67479 -33.77024 -33.06227 -31.97449 -30.78458 -29.54028 -29.19990 -27.58553 -26.05412 -25.49251 -23.79940 -23.03179 -22.78375 -20.81725 -20.04641 -19.35226 -18.81498 -17.70895 -17.05427 -16.94583 -16.54480 -15.70804 -15.46376 -15.21578 -15.13731 -15.03030 -14.58508 -14.40206 -14.09607 -13.94336 -13.80067 -13.44540 -13.06155 -12.80915 -12.70280 -12.43644 -12.20596 -12.04892 -11.95153 -11.74092 -11.45379 -11.34163 -11.09460 -11.04673 -10.84833 -10.78076 -10.53126 -10.45404 -10.32361 -9.93698 -9.82318 -9.51695 -8.77154 -8.63072 -8.52031 -8.16378 -6.84002 -5.79357 -3.27032 1.16310 1.19846 2.86214 2.96454 3.09462 3.31181 3.36542 3.38678 3.49616 3.60786 4.11832 4.40587 4.47723 4.50305 4.65682 4.83727 4.93077 5.07490 5.13811 5.18524 5.25647 5.33090 5.33869 5.39390 5.40669 5.58555 5.59191 5.75782 5.90624 6.00725 6.07876 6.09051 6.17559 6.30919 6.32602 6.42045 6.49971 6.74445 6.82242 6.83783 6.86904 7.02889 7.35036 7.36663 7.66412 7.75572 8.00350 8.32111 8.62774 9.16106 9.79164 10.29164 11.24982 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015146 B = 0.002670 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.207228 B =10485.315461 C =11103.180206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.158 3.842 3 H 0.067 0.933 4 C 0.108 3.892 5 N -0.706 5.706 6 C 0.510 3.490 7 O -0.546 6.546 8 C -0.137 4.137 9 C 0.072 3.928 10 H 0.092 0.908 11 C 0.025 3.975 12 O -0.307 6.307 13 C 0.042 3.958 14 C -0.115 4.115 15 C -0.124 4.124 16 C -0.116 4.116 17 C -0.114 4.114 18 C 0.063 3.937 19 O -0.286 6.286 20 N -0.594 5.594 21 C 0.166 3.834 22 C -0.263 4.263 23 H 0.068 0.932 24 C 0.005 3.995 25 N -0.903 5.903 26 Si 0.904 3.096 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.284 1.284 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.041 0.959 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.410 0.590 36 H 0.116 0.884 37 H 0.108 0.892 38 H 0.080 0.920 39 H 0.124 0.876 40 H 0.131 0.869 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.135 0.865 44 H 0.027 0.973 45 H 0.042 0.958 46 H -0.002 1.002 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.623 -4.057 16.387 19.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.049 3.951 3 H 0.086 0.914 4 C -0.018 4.018 5 N -0.357 5.357 6 C 0.295 3.705 7 O -0.424 6.424 8 C -0.177 4.177 9 C 0.015 3.985 10 H 0.110 0.890 11 C -0.051 4.051 12 O -0.222 6.222 13 C -0.003 4.003 14 C -0.134 4.134 15 C -0.142 4.142 16 C -0.134 4.134 17 C -0.133 4.133 18 C 0.017 3.983 19 O -0.201 6.201 20 N -0.317 5.317 21 C 0.021 3.979 22 C -0.392 4.392 23 H 0.086 0.914 24 C -0.194 4.194 25 N -0.547 5.547 26 Si 0.734 3.266 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.210 1.210 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.246 0.754 36 H 0.134 0.866 37 H 0.126 0.874 38 H 0.098 0.902 39 H 0.142 0.858 40 H 0.149 0.851 41 H 0.147 0.853 42 H 0.148 0.852 43 H 0.153 0.847 44 H 0.045 0.955 45 H 0.061 0.939 46 H 0.016 0.984 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.158 -4.401 16.811 20.128 hybrid contribution 0.772 0.645 -1.385 1.712 sum 10.930 -3.756 15.426 19.275 Atomic orbital electron populations 1.22186 0.97526 1.01378 1.00540 1.20614 0.92582 0.95449 0.86457 0.91433 1.21926 0.79575 1.01249 0.99069 1.45871 1.08394 1.58429 1.22986 1.20176 0.89123 0.78287 0.82947 1.90699 1.70073 1.47757 1.33840 1.21680 0.94962 1.02466 0.98588 1.22811 0.93005 0.82330 1.00379 0.89016 1.23718 0.94495 0.99188 0.87697 1.86287 1.58909 1.32758 1.44225 1.18955 0.91773 0.88666 1.00857 1.20402 1.00747 0.92877 0.99386 1.20871 0.95892 0.96336 1.01112 1.20918 0.95797 0.99510 0.97194 1.20527 1.00735 0.92663 0.99385 1.19029 0.91218 0.92965 0.95065 1.86456 1.58792 1.19201 1.55605 1.43972 1.58184 1.08043 1.21487 1.20718 0.99791 0.83327 0.94026 1.19141 1.19241 1.11445 0.89393 0.91436 1.25047 0.98392 0.99281 0.96647 1.70060 1.36003 1.32858 1.15814 0.86361 0.81481 0.78499 0.80258 1.21085 1.21698 1.21001 0.92227 0.93169 0.94003 0.92163 0.92604 0.75414 0.86615 0.87351 0.90226 0.85841 0.85061 0.85286 0.85201 0.84714 0.95497 0.93900 0.98389 0.93636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.19 37.16 0.34 -2.41 16 2 C 0.16 2.97 2.87 -67.93 -0.19 2.77 16 3 H 0.07 1.25 7.86 -51.93 -0.41 0.84 16 4 C 0.11 1.88 4.93 -4.05 -0.02 1.86 16 5 N -0.71 -11.62 5.39 -60.30 -0.32 -11.94 16 6 C 0.51 8.20 7.71 -10.99 -0.08 8.11 16 7 O -0.55 -10.69 15.44 -8.66 -0.13 -10.82 16 8 C -0.14 -1.59 5.44 -27.88 -0.15 -1.74 16 9 C 0.07 0.89 2.55 -26.48 -0.07 0.83 16 10 H 0.09 1.22 7.98 -51.93 -0.41 0.81 16 11 C 0.02 0.24 6.56 37.40 0.25 0.49 16 12 O -0.31 -3.77 10.42 -32.87 -0.34 -4.11 16 13 C 0.04 0.55 6.49 -39.14 -0.25 0.29 16 14 C -0.12 -1.24 9.96 -39.42 -0.39 -1.63 16 15 C -0.12 -1.16 10.04 -39.59 -0.40 -1.56 16 16 C -0.12 -1.16 10.04 -39.59 -0.40 -1.56 16 17 C -0.11 -1.44 9.96 -39.43 -0.39 -1.84 16 18 C 0.06 0.89 6.49 -39.14 -0.25 0.64 16 19 O -0.29 -4.43 9.32 -44.41 -0.41 -4.84 16 20 N -0.59 -13.55 2.29 -173.49 -0.40 -13.95 16 21 C 0.17 3.95 8.00 59.85 0.48 4.43 16 22 C -0.26 -6.55 9.33 -15.06 -0.14 -6.69 16 23 H 0.07 1.60 7.81 -52.49 -0.41 1.19 16 24 C 0.01 0.14 5.12 -17.43 -0.09 0.05 16 25 N -0.90 -25.28 10.63 55.49 0.59 -24.69 16 26 Si 0.90 20.60 29.57 -169.99 -5.03 15.57 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 29 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.05 0.90 7.67 -51.93 -0.40 0.50 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 1.16 6.86 -51.93 -0.36 0.80 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.41 6.68 7.89 -40.82 -0.32 6.35 16 36 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.11 1.21 8.14 -51.93 -0.42 0.78 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 41 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 42 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 43 H 0.13 1.65 8.06 -52.49 -0.42 1.22 16 44 H 0.03 0.70 7.43 -51.93 -0.39 0.31 16 45 H 0.04 1.11 7.20 -51.93 -0.37 0.73 16 46 H 0.00 -0.05 6.53 -51.93 -0.34 -0.39 16 47 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 383.86 15.07 5.78 5.78 Total: -1.00 -32.01 383.86 -9.23 -41.24 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -7.19 Total: 5.71 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -1.77 Total: 2.05 kcal Atomic # 7 Polarization: -50.45 SS G_CDS: -0.13 Total: -50.58 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.89 Total: -19.78 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.03 Total: 15.57 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.01 -9.23 -41.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734039189.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.784 kcal (2) G-P(sol) polarization free energy of solvation -32.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds