Wall clock time and date at job start Tue Mar 31 2020 17:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46936 * 2 1 4 4 C 1.52997 * 109.47535 * 119.99865 * 2 1 3 5 5 N 1.46495 * 109.47643 * 174.99898 * 4 2 1 6 6 C 1.34773 * 120.00541 * 179.97438 * 5 4 2 7 7 O 1.21287 * 119.99877 * 0.02562 * 6 5 4 8 8 C 1.50695 * 120.00164 * 179.97438 * 6 5 4 9 9 C 1.53006 * 109.47308 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.73623 * 304.39932 * 9 8 6 11 11 C 1.53472 * 109.71002 * 183.79843 * 9 8 6 12 12 O 1.43176 * 108.23299 * 180.56965 * 11 9 8 13 13 C 1.36110 * 116.69658 * 46.25873 * 12 11 9 14 14 C 1.38705 * 119.39694 * 163.02184 * 13 12 11 15 15 C 1.38198 * 120.06584 * 180.02562 * 14 13 12 16 16 C 1.38251 * 120.11397 * 359.52789 * 15 14 13 17 17 C 1.38198 * 120.11153 * 0.32853 * 16 15 14 18 18 C 1.38701 * 120.06734 * 359.93082 * 17 16 15 19 19 O 1.36115 * 119.39593 * 179.81724 * 18 17 16 20 20 N 1.46498 * 109.47065 * 240.00060 * 2 1 3 21 21 C 1.46506 * 120.00072 * 299.99768 * 20 2 1 22 22 C 1.36934 * 120.00177 * 119.99781 * 20 2 1 23 23 H 1.08000 * 120.00267 * 22.82182 * 22 20 2 24 24 C 1.38814 * 120.00039 * 202.82229 * 22 20 2 25 25 N 1.31617 * 120.00214 * 11.58505 * 24 22 20 26 26 Si 1.86800 * 120.00038 * 191.58748 * 24 22 20 27 27 H 1.48500 * 109.47332 * 59.99752 * 26 24 22 28 28 H 1.48503 * 109.47386 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.47229 * 299.99997 * 26 24 22 30 30 H 1.08996 * 109.47672 * 59.99971 * 1 2 3 31 31 H 1.09003 * 109.46928 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47127 * 299.99950 * 1 2 3 33 33 H 1.08999 * 109.47318 * 54.99610 * 4 2 1 34 34 H 1.09000 * 109.47152 * 295.00047 * 4 2 1 35 35 H 0.97007 * 120.00013 * 0.02562 * 5 4 2 36 36 H 1.09001 * 109.47636 * 60.00641 * 8 6 5 37 37 H 1.09000 * 109.47503 * 300.00172 * 8 6 5 38 38 H 1.09001 * 109.70517 * 300.25808 * 11 9 8 39 39 H 1.08998 * 109.70755 * 60.88528 * 11 9 8 40 40 H 1.08001 * 119.96491 * 359.81463 * 14 13 12 41 41 H 1.07996 * 119.94088 * 179.80481 * 15 14 13 42 42 H 1.07994 * 119.94269 * 180.31682 * 16 15 14 43 43 H 1.07995 * 119.96731 * 179.97438 * 17 16 15 44 44 H 1.08992 * 109.47035 * 93.84808 * 21 20 2 45 45 H 1.08998 * 109.46888 * 213.85181 * 21 20 2 46 46 H 1.09006 * 109.46422 * 333.85016 * 21 20 2 47 47 H 0.97001 * 120.00153 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1905 6 6 4.1732 -1.4282 2.1911 7 8 3.5701 -1.8832 3.1400 8 6 5.6750 -1.5368 2.1304 9 6 6.1851 -2.2579 3.3797 10 1 5.8334 -1.7410 4.2725 11 6 7.7195 -2.2879 3.3698 12 8 8.1617 -2.9796 4.5428 13 6 7.5333 -4.1511 4.8352 14 6 8.1244 -5.0375 5.7234 15 6 7.4988 -6.2311 6.0297 16 6 6.2780 -6.5407 5.4596 17 6 5.6822 -5.6606 4.5761 18 6 6.3073 -4.4634 4.2602 19 8 5.7100 -3.6084 3.3856 20 7 2.0183 -0.6906 -1.1962 21 6 1.6644 -2.0932 -1.4280 22 6 2.8055 -0.0251 -2.0976 23 1 3.3665 0.8438 -1.7866 24 6 2.8825 -0.4673 -3.4112 25 7 2.0365 -1.3747 -3.8508 26 14 4.1867 0.2255 -4.5550 27 1 5.5342 -0.0610 -4.0005 28 1 4.0573 -0.4052 -5.8932 29 1 4.0053 1.6940 -4.6808 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6055 -1.7197 1.2952 34 1 1.7517 -0.1582 2.1369 35 1 3.9825 -0.4621 0.4318 36 1 6.1100 -0.5384 2.0838 37 1 5.9630 -2.1004 1.2430 38 1 8.0712 -2.8105 2.4802 39 1 8.1071 -1.2692 3.3757 40 1 9.0760 -4.7961 6.1734 41 1 7.9623 -6.9211 6.7191 42 1 5.7891 -7.4719 5.7049 43 1 4.7287 -5.9050 4.1318 44 1 0.7756 -2.1445 -2.0568 45 1 2.4916 -2.5991 -1.9260 46 1 1.4628 -2.5795 -0.4735 47 1 2.0905 -1.6839 -4.7686 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734039189.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:12 Heat of formation + Delta-G solvation = -80.396625 kcal Electronic energy + Delta-G solvation = -29019.572813 eV Core-core repulsion = 24975.058731 eV Total energy + Delta-G solvation = -4044.514082 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.31171 -40.65795 -38.76144 -38.39140 -38.11858 -35.37992 -34.10889 -33.56329 -31.62399 -31.18897 -30.23251 -28.58202 -28.02076 -26.72978 -25.03035 -24.58119 -23.67733 -21.72978 -21.29750 -20.89691 -19.80127 -18.86942 -18.57859 -17.99355 -17.67608 -17.16561 -16.90300 -16.35292 -16.15063 -16.06717 -15.82109 -15.54002 -15.34575 -14.87444 -14.84542 -14.75110 -14.62371 -14.36358 -13.93212 -13.77751 -13.63238 -13.10413 -12.96013 -12.87069 -12.80984 -12.70493 -12.60197 -12.47551 -12.31487 -12.13855 -12.11759 -11.95231 -11.78286 -11.51857 -11.43325 -10.84211 -10.58865 -9.92123 -9.63311 -9.05721 -8.77245 -7.77608 -5.26312 0.30616 0.34190 1.52245 1.52973 1.59380 1.70715 2.04184 2.20016 2.34762 2.54459 2.75634 3.21735 3.37990 3.54957 3.60001 3.65450 3.79902 4.01914 4.07633 4.14062 4.25111 4.31032 4.36901 4.39182 4.43107 4.49671 4.59606 4.62792 4.70150 4.72877 4.75879 4.91145 4.94013 5.03178 5.21044 5.22910 5.23497 5.36565 5.41835 5.51497 5.61759 5.69563 5.73500 5.74134 5.95626 6.36211 6.44269 6.69539 7.18186 7.34507 7.89615 8.36464 9.26225 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015146 B = 0.002670 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.207228 B =10485.315461 C =11103.180206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.158 3.842 3 H 0.078 0.922 4 C 0.118 3.882 5 N -0.706 5.706 6 C 0.506 3.494 7 O -0.585 6.585 8 C -0.127 4.127 9 C 0.068 3.932 10 H 0.076 0.924 11 C 0.028 3.972 12 O -0.316 6.316 13 C 0.025 3.975 14 C -0.120 4.120 15 C -0.115 4.115 16 C -0.113 4.113 17 C -0.138 4.138 18 C 0.031 3.969 19 O -0.319 6.319 20 N -0.602 5.602 21 C 0.187 3.813 22 C -0.256 4.256 23 H 0.085 0.915 24 C -0.054 4.054 25 N -0.941 5.941 26 Si 0.967 3.033 27 H -0.272 1.272 28 H -0.306 1.306 29 H -0.277 1.277 30 H 0.041 0.959 31 H 0.040 0.960 32 H 0.076 0.924 33 H 0.039 0.961 34 H 0.071 0.929 35 H 0.412 0.588 36 H 0.159 0.841 37 H 0.115 0.885 38 H 0.085 0.915 39 H 0.161 0.839 40 H 0.152 0.848 41 H 0.166 0.834 42 H 0.158 0.842 43 H 0.125 0.875 44 H -0.002 1.002 45 H 0.015 0.985 46 H 0.013 0.987 47 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.889 -3.201 17.971 22.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.051 3.949 3 H 0.096 0.904 4 C -0.008 4.008 5 N -0.357 5.357 6 C 0.293 3.707 7 O -0.466 6.466 8 C -0.166 4.166 9 C 0.011 3.989 10 H 0.093 0.907 11 C -0.047 4.047 12 O -0.231 6.231 13 C -0.020 4.020 14 C -0.139 4.139 15 C -0.133 4.133 16 C -0.131 4.131 17 C -0.157 4.157 18 C -0.014 4.014 19 O -0.234 6.234 20 N -0.325 5.325 21 C 0.042 3.958 22 C -0.386 4.386 23 H 0.102 0.898 24 C -0.249 4.249 25 N -0.588 5.588 26 Si 0.796 3.204 27 H -0.197 1.197 28 H -0.234 1.234 29 H -0.203 1.203 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.094 0.906 33 H 0.057 0.943 34 H 0.089 0.911 35 H 0.249 0.751 36 H 0.177 0.823 37 H 0.134 0.866 38 H 0.104 0.896 39 H 0.178 0.822 40 H 0.170 0.830 41 H 0.183 0.817 42 H 0.175 0.825 43 H 0.143 0.857 44 H 0.017 0.983 45 H 0.034 0.966 46 H 0.032 0.968 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 12.441 -3.512 18.426 22.509 hybrid contribution 0.024 0.355 -1.755 1.791 sum 12.465 -3.157 16.672 21.054 Atomic orbital electron populations 1.22085 0.96436 1.01062 1.01362 1.20776 0.93389 0.95629 0.85146 0.90373 1.21706 0.80379 0.99977 0.98734 1.45887 1.07948 1.58597 1.23247 1.20926 0.90967 0.76939 0.81887 1.90684 1.71352 1.49213 1.35319 1.21747 0.91485 1.04879 0.98527 1.22917 0.94853 0.81214 0.99930 0.90655 1.23915 0.92481 1.00988 0.87313 1.86258 1.58961 1.32716 1.45179 1.19232 0.91733 0.89410 1.01583 1.20808 1.01512 0.92919 0.98637 1.21326 0.95193 0.96205 1.00538 1.21283 0.96069 0.99836 0.95886 1.20741 1.00956 0.93280 1.00710 1.19355 0.92344 0.93563 0.96180 1.86397 1.60106 1.20493 1.56397 1.44117 1.58363 1.07774 1.22287 1.20338 0.97373 0.84286 0.93797 1.19584 1.18597 1.11012 0.89406 0.89768 1.25806 1.00501 1.00191 0.98428 1.70248 1.38101 1.34941 1.15546 0.85345 0.79664 0.77802 0.77588 1.19749 1.23352 1.20271 0.93933 0.94105 0.90558 0.94270 0.91079 0.75114 0.82307 0.86634 0.89650 0.82186 0.83025 0.81652 0.82461 0.85675 0.98331 0.96577 0.96824 0.94650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.10 9.19 71.98 0.66 -4.44 16 2 C 0.16 5.74 2.87 44.99 0.13 5.87 16 3 H 0.08 2.71 7.86 -2.39 -0.02 2.69 16 4 C 0.12 4.01 4.93 86.38 0.43 4.43 16 5 N -0.71 -22.44 5.39 -463.08 -2.49 -24.93 16 6 C 0.51 15.94 7.71 87.66 0.68 16.61 16 7 O -0.58 -23.21 15.44 10.54 0.16 -23.05 16 8 C -0.13 -2.74 5.44 29.85 0.16 -2.58 16 9 C 0.07 1.65 2.55 30.75 0.08 1.73 16 10 H 0.08 2.03 7.98 -2.39 -0.02 2.01 16 11 C 0.03 0.51 6.56 72.14 0.47 0.98 16 12 O -0.32 -7.40 10.42 -82.58 -0.86 -8.26 16 13 C 0.03 0.64 6.49 22.56 0.15 0.79 16 14 C -0.12 -2.37 9.96 22.37 0.22 -2.15 16 15 C -0.11 -1.85 10.04 22.26 0.22 -1.63 16 16 C -0.11 -2.10 10.04 22.26 0.22 -1.88 16 17 C -0.14 -3.58 9.96 22.37 0.22 -3.36 16 18 C 0.03 0.89 6.49 22.56 0.15 1.04 16 19 O -0.32 -10.19 9.32 -71.61 -0.67 -10.86 16 20 N -0.60 -27.33 2.29 -702.79 -1.61 -28.94 16 21 C 0.19 9.14 8.00 127.77 1.02 10.16 16 22 C -0.26 -12.54 9.33 84.03 0.78 -11.75 16 23 H 0.08 3.79 7.81 -2.91 -0.02 3.77 16 24 C -0.05 -2.85 5.12 84.86 0.43 -2.42 16 25 N -0.94 -54.05 10.63 21.65 0.23 -53.82 16 26 Si 0.97 42.22 29.57 68.60 2.03 44.25 16 27 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 28 H -0.31 -14.06 7.11 99.48 0.71 -13.35 16 29 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 30 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.04 1.45 7.67 -2.39 -0.02 1.43 16 32 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 33 H 0.04 1.50 6.86 -2.39 -0.02 1.48 16 34 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.41 12.72 7.89 -92.70 -0.73 11.98 16 36 H 0.16 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.16 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.15 2.27 8.06 -2.91 -0.02 2.24 16 41 H 0.17 1.44 8.06 -2.91 -0.02 1.41 16 42 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 43 H 0.13 3.30 8.06 -2.91 -0.02 3.28 16 44 H 0.00 -0.09 7.43 -2.39 -0.02 -0.11 16 45 H 0.02 0.84 7.20 -2.39 -0.02 0.82 16 46 H 0.01 0.60 6.53 -2.38 -0.02 0.58 16 47 H 0.24 13.89 8.31 -92.71 -0.77 13.11 16 Total: -1.00 -72.27 383.86 3.07 -69.20 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: 0.24 Total: 25.00 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: 6.03 Total: 11.41 kcal Atomic # 7 Polarization: -103.82 SS G_CDS: -3.87 Total: -107.69 kcal Atomic # 8 Polarization: -40.81 SS G_CDS: -1.36 Total: -42.17 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -72.27 3.07 -69.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734039189.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.195 kcal (2) G-P(sol) polarization free energy of solvation -72.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds