Wall clock time and date at job start Tue Mar 31 2020 17:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47102 * 120.00237 * 2 1 3 5 5 N 1.46504 * 109.46883 * 175.00371 * 4 2 1 6 6 C 1.36936 * 119.99477 * 180.02562 * 5 4 2 7 7 H 1.08005 * 120.00404 * 359.97438 * 6 5 4 8 8 C 1.38814 * 119.99891 * 179.97438 * 6 5 4 9 9 N 1.31625 * 119.99913 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00093 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47327 * 59.99747 * 10 8 6 12 12 H 1.48505 * 109.47059 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.47290 * 299.99991 * 10 8 6 14 14 N 1.46498 * 109.47308 * 239.99854 * 2 1 3 15 15 C 1.34783 * 120.00018 * 85.00189 * 14 2 1 16 16 O 1.21285 * 119.99349 * 359.97438 * 15 14 2 17 17 C 1.50698 * 120.00276 * 179.97438 * 15 14 2 18 18 H 1.08997 * 109.52335 * 305.13170 * 17 15 14 19 19 O 1.43079 * 109.52509 * 184.99824 * 17 15 14 20 20 C 1.43075 * 113.58851 * 298.05272 * 19 17 15 21 21 C 1.53142 * 109.15335 * 302.04436 * 20 19 17 22 22 O 1.43079 * 109.14940 * 55.31701 * 21 20 19 23 23 C 1.43075 * 113.58851 * 302.04655 * 22 21 20 24 24 H 1.08998 * 109.52763 * 298.04993 * 23 22 21 25 25 C 1.50710 * 109.51905 * 177.85504 * 23 22 21 26 26 C 1.38233 * 119.99849 * 325.05466 * 25 23 22 27 27 C 1.38239 * 119.99692 * 179.78901 * 26 25 23 28 28 C 1.38237 * 120.00028 * 0.46189 * 27 26 25 29 29 C 1.38234 * 119.99704 * 359.77079 * 28 27 26 30 30 C 1.38228 * 119.99709 * 145.32680 * 25 23 22 31 31 H 1.09002 * 109.46922 * 60.00398 * 1 2 3 32 32 H 1.09006 * 109.46822 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47474 * 299.99800 * 1 2 3 34 34 H 1.09001 * 109.47002 * 294.99868 * 4 2 1 35 35 H 1.08993 * 109.46955 * 55.00306 * 4 2 1 36 36 H 0.96992 * 119.99966 * 359.97438 * 5 4 2 37 37 H 0.96993 * 120.00031 * 180.02562 * 9 8 6 38 38 H 0.96995 * 120.00562 * 265.00143 * 14 2 1 39 39 H 1.08998 * 109.52763 * 61.95007 * 20 19 17 40 40 H 1.09010 * 109.51876 * 182.07946 * 20 19 17 41 41 H 1.09000 * 109.52263 * 175.22123 * 21 20 19 42 42 H 1.08997 * 109.52623 * 295.35000 * 21 20 19 43 43 H 1.07998 * 120.00298 * 359.97438 * 26 25 23 44 44 H 1.07996 * 119.99679 * 180.25187 * 27 26 25 45 45 H 1.07992 * 120.00089 * 179.79028 * 28 27 26 46 46 H 1.08000 * 119.99828 * 180.02562 * 29 28 27 47 47 H 1.08001 * 120.00381 * 359.97438 * 30 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5001 -0.8264 1.1906 6 6 4.1837 -1.4389 2.2067 7 1 3.6467 -1.8441 3.0516 8 6 5.5671 -1.5389 2.1510 9 7 6.2217 -1.0454 1.1211 10 14 6.4999 -2.3738 3.5374 11 1 6.0432 -3.7811 3.6641 12 1 7.9546 -2.3507 3.2396 13 1 6.2433 -1.6537 4.8105 14 7 2.0183 -0.6906 -1.1961 15 6 2.1471 -0.0183 -2.3571 16 8 1.8582 1.1584 -2.4116 17 6 2.6500 -0.7285 -3.5875 18 1 3.6092 -1.1983 -3.3703 19 8 2.8093 0.2140 -4.6521 20 6 1.5882 0.8502 -5.0411 21 6 0.5770 -0.2193 -5.4639 22 8 0.4177 -1.1618 -4.3993 23 6 1.6388 -1.7980 -4.0103 24 1 2.0382 -2.3648 -4.8513 25 6 1.3759 -2.7279 -2.8539 26 6 0.4324 -2.3952 -1.9000 27 6 0.1882 -3.2502 -0.8416 28 6 0.8944 -4.4336 -0.7320 29 6 1.8414 -4.7640 -1.6832 30 6 2.0824 -3.9109 -2.7440 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.7516 -0.1584 2.1370 35 1 1.6054 -1.7198 1.2951 36 1 3.9823 -0.4627 0.4317 37 1 7.1883 -1.1157 1.0819 38 1 2.2490 -1.6317 -1.1526 39 1 1.1888 1.4170 -4.2001 40 1 1.7786 1.5237 -5.8768 41 1 -0.3820 0.2514 -5.6803 42 1 0.9401 -0.7322 -6.3545 43 1 -0.1162 -1.4686 -1.9833 44 1 -0.5519 -2.9922 -0.0987 45 1 0.7060 -5.1000 0.0967 46 1 2.3928 -5.6886 -1.5978 47 1 2.8225 -4.1690 -3.4871 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754270954.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:28 Heat of formation + Delta-G solvation = -62.250823 kcal Electronic energy + Delta-G solvation = -31405.232818 eV Core-core repulsion = 27361.505597 eV Total energy + Delta-G solvation = -4043.727221 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.28885 -39.00091 -38.55443 -36.33969 -35.69496 -33.81470 -33.19950 -31.16432 -30.79639 -30.05825 -29.75831 -27.78679 -25.73906 -24.99786 -23.24284 -22.51817 -22.22533 -21.57005 -20.51160 -19.93607 -17.40637 -17.27414 -17.04498 -16.93634 -16.55449 -16.11967 -15.56975 -15.33258 -14.84784 -14.78059 -14.41161 -14.32125 -13.99289 -13.65525 -13.51479 -13.40463 -13.19509 -12.86618 -12.70146 -12.48446 -12.26211 -12.16661 -12.12028 -11.84155 -11.52954 -11.22120 -11.07773 -10.97370 -10.88649 -10.81940 -10.64585 -10.43246 -10.07398 -9.81233 -9.74012 -9.05447 -8.99784 -8.87555 -8.60314 -8.26113 -6.95202 -5.77350 -3.06968 1.27585 1.48391 2.82767 3.34020 3.42202 3.46967 3.48031 3.52260 3.64875 3.82749 4.48409 4.57094 4.58256 4.75782 4.90730 4.96610 5.05920 5.08602 5.12343 5.20913 5.27657 5.30801 5.33751 5.50261 5.53142 5.55127 5.60400 5.65690 5.73738 5.94036 5.94763 6.04612 6.07103 6.12398 6.19902 6.39459 6.46387 6.49225 6.52308 6.60961 6.72530 6.84182 6.88586 6.98190 7.00702 7.67305 7.86656 8.40248 8.52188 9.51935 10.08150 10.43634 11.44994 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012474 B = 0.004483 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.204606 B = 6244.487566 C = 6807.694140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.131 3.869 3 H 0.085 0.915 4 C 0.145 3.855 5 N -0.730 5.730 6 C -0.241 4.241 7 H 0.069 0.931 8 C -0.011 4.011 9 N -0.931 5.931 10 Si 0.906 3.094 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 N -0.699 5.699 15 C 0.501 3.499 16 O -0.539 6.539 17 C 0.045 3.955 18 H 0.139 0.861 19 O -0.349 6.349 20 C 0.001 3.999 21 C 0.026 3.974 22 O -0.367 6.367 23 C 0.116 3.884 24 H 0.087 0.913 25 C -0.117 4.117 26 C -0.068 4.068 27 C -0.131 4.131 28 C -0.098 4.098 29 C -0.123 4.123 30 C -0.098 4.098 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.032 0.968 35 H 0.025 0.975 36 H 0.385 0.615 37 H 0.256 0.744 38 H 0.409 0.591 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.058 0.942 43 H 0.131 0.869 44 H 0.124 0.876 45 H 0.123 0.877 46 H 0.125 0.875 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.857 -4.354 -12.300 19.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.027 3.973 3 H 0.103 0.897 4 C 0.017 3.983 5 N -0.374 5.374 6 C -0.372 4.372 7 H 0.087 0.913 8 C -0.207 4.207 9 N -0.579 5.579 10 Si 0.737 3.263 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 N -0.353 5.353 15 C 0.287 3.713 16 O -0.418 6.418 17 C -0.017 4.017 18 H 0.156 0.844 19 O -0.266 6.266 20 C -0.075 4.075 21 C -0.050 4.050 22 O -0.286 6.286 23 C 0.057 3.943 24 H 0.104 0.896 25 C -0.117 4.117 26 C -0.087 4.087 27 C -0.149 4.149 28 C -0.116 4.116 29 C -0.141 4.141 30 C -0.116 4.116 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.049 0.951 35 H 0.043 0.957 36 H 0.219 0.781 37 H 0.066 0.934 38 H 0.248 0.752 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.076 0.924 43 H 0.149 0.851 44 H 0.142 0.858 45 H 0.141 0.859 46 H 0.143 0.857 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -13.993 -3.583 -12.182 18.896 hybrid contribution 1.023 -0.702 0.570 1.366 sum -12.969 -4.285 -11.612 17.928 Atomic orbital electron populations 1.22273 0.95672 1.02209 1.02081 1.21236 0.93360 0.97970 0.84762 0.89703 1.20969 0.86924 0.96944 0.93437 1.42320 0.99672 1.70237 1.25217 1.19149 0.89390 1.29521 0.99161 0.91276 1.24729 0.96416 1.01559 0.98000 1.69656 1.07298 1.50754 1.30228 0.86287 0.79027 0.79238 0.81712 1.21309 1.21719 1.21304 1.46628 1.65016 1.14703 1.08982 1.20895 0.77949 0.87387 0.85109 1.90568 1.50813 1.15723 1.84657 1.22879 1.01738 0.90131 0.86964 0.84375 1.88183 1.30984 1.56855 1.50565 1.23648 0.85828 0.95391 1.02649 1.23292 1.01118 0.90912 0.89717 1.88122 1.29401 1.57041 1.54002 1.21317 0.85553 0.91438 0.95972 0.89569 1.19377 1.00154 0.95808 0.96410 1.21162 0.95851 0.98878 0.92772 1.21137 1.00769 0.94588 0.98389 1.21220 0.95463 0.96723 0.98218 1.21062 0.98442 0.99952 0.94676 1.20915 0.98947 0.93010 0.98752 0.92390 0.91968 0.91772 0.95066 0.95732 0.78097 0.93449 0.75177 0.88268 0.88056 0.87753 0.92385 0.85122 0.85816 0.85940 0.85750 0.85790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 8.10 37.16 0.30 -1.94 16 2 C 0.13 2.25 2.73 -67.93 -0.19 2.06 16 3 H 0.08 1.66 7.58 -51.93 -0.39 1.26 16 4 C 0.15 2.84 5.82 -4.04 -0.02 2.82 16 5 N -0.73 -18.08 5.43 -59.90 -0.33 -18.40 16 6 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 7 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 8 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 9 N -0.93 -27.93 13.06 55.49 0.72 -27.21 16 10 Si 0.91 22.16 29.55 -169.99 -5.02 17.13 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 14 N -0.70 -11.67 2.27 -53.80 -0.12 -11.79 16 15 C 0.50 8.66 6.05 -10.98 -0.07 8.60 16 16 O -0.54 -10.61 13.51 -14.26 -0.19 -10.80 16 17 C 0.04 0.66 3.40 -27.81 -0.09 0.57 16 18 H 0.14 1.98 8.14 -51.93 -0.42 1.56 16 19 O -0.35 -5.32 10.51 -62.50 -0.66 -5.97 16 20 C 0.00 0.02 6.59 37.23 0.25 0.26 16 21 C 0.03 0.28 7.05 37.23 0.26 0.54 16 22 O -0.37 -4.76 9.38 -48.80 -0.46 -5.21 16 23 C 0.12 1.46 2.79 -27.80 -0.08 1.38 16 24 H 0.09 0.94 8.06 -51.93 -0.42 0.52 16 25 C -0.12 -1.48 3.53 -104.62 -0.37 -1.85 16 26 C -0.07 -0.88 4.74 -39.58 -0.19 -1.07 16 27 C -0.13 -1.58 9.04 -39.58 -0.36 -1.94 16 28 C -0.10 -1.17 10.05 -39.58 -0.40 -1.57 16 29 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 30 C -0.10 -1.16 9.68 -39.58 -0.38 -1.54 16 31 H 0.06 0.82 8.05 -51.93 -0.42 0.41 16 32 H 0.06 0.76 4.87 -51.93 -0.25 0.51 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.39 10.30 7.33 -40.82 -0.30 10.00 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.41 6.86 5.49 -40.82 -0.22 6.63 16 39 H 0.10 1.50 5.44 -51.93 -0.28 1.22 16 40 H 0.10 1.03 8.14 -51.92 -0.42 0.61 16 41 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.13 1.80 5.48 -52.49 -0.29 1.51 16 44 H 0.12 1.31 7.11 -52.49 -0.37 0.94 16 45 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 46 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 47 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 LS Contribution 366.84 15.07 5.53 5.53 Total: -1.00 -32.61 366.84 -9.23 -41.83 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: -6.72 Total: 17.59 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -1.98 Total: -2.69 kcal Atomic # 7 Polarization: -57.68 SS G_CDS: 0.28 Total: -57.40 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -1.31 Total: -21.99 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.61 -9.23 -41.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754270954.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.418 kcal (2) G-P(sol) polarization free energy of solvation -32.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds