Wall clock time and date at job start Tue Mar 31 2020 17:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47102 * 120.00237 * 2 1 3 5 5 N 1.46504 * 109.46883 * 175.00371 * 4 2 1 6 6 C 1.36936 * 119.99477 * 180.02562 * 5 4 2 7 7 H 1.08005 * 120.00404 * 359.97438 * 6 5 4 8 8 C 1.38814 * 119.99891 * 179.97438 * 6 5 4 9 9 N 1.31625 * 119.99913 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00093 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47327 * 59.99747 * 10 8 6 12 12 H 1.48505 * 109.47059 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.47290 * 299.99991 * 10 8 6 14 14 N 1.46498 * 109.47308 * 239.99854 * 2 1 3 15 15 C 1.34783 * 120.00018 * 85.00189 * 14 2 1 16 16 O 1.21285 * 119.99349 * 359.97438 * 15 14 2 17 17 C 1.50698 * 120.00276 * 179.97438 * 15 14 2 18 18 H 1.08997 * 109.52335 * 305.13170 * 17 15 14 19 19 O 1.43079 * 109.52509 * 184.99824 * 17 15 14 20 20 C 1.43075 * 113.58851 * 298.05272 * 19 17 15 21 21 C 1.53142 * 109.15335 * 302.04436 * 20 19 17 22 22 O 1.43079 * 109.14940 * 55.31701 * 21 20 19 23 23 C 1.43075 * 113.58851 * 302.04655 * 22 21 20 24 24 H 1.08998 * 109.52763 * 298.04993 * 23 22 21 25 25 C 1.50710 * 109.51905 * 177.85504 * 23 22 21 26 26 C 1.38233 * 119.99849 * 325.05466 * 25 23 22 27 27 C 1.38239 * 119.99692 * 179.78901 * 26 25 23 28 28 C 1.38237 * 120.00028 * 0.46189 * 27 26 25 29 29 C 1.38234 * 119.99704 * 359.77079 * 28 27 26 30 30 C 1.38228 * 119.99709 * 145.32680 * 25 23 22 31 31 H 1.09002 * 109.46922 * 60.00398 * 1 2 3 32 32 H 1.09006 * 109.46822 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47474 * 299.99800 * 1 2 3 34 34 H 1.09001 * 109.47002 * 294.99868 * 4 2 1 35 35 H 1.08993 * 109.46955 * 55.00306 * 4 2 1 36 36 H 0.96992 * 119.99966 * 359.97438 * 5 4 2 37 37 H 0.96993 * 120.00031 * 180.02562 * 9 8 6 38 38 H 0.96995 * 120.00562 * 265.00143 * 14 2 1 39 39 H 1.08998 * 109.52763 * 61.95007 * 20 19 17 40 40 H 1.09010 * 109.51876 * 182.07946 * 20 19 17 41 41 H 1.09000 * 109.52263 * 175.22123 * 21 20 19 42 42 H 1.08997 * 109.52623 * 295.35000 * 21 20 19 43 43 H 1.07998 * 120.00298 * 359.97438 * 26 25 23 44 44 H 1.07996 * 119.99679 * 180.25187 * 27 26 25 45 45 H 1.07992 * 120.00089 * 179.79028 * 28 27 26 46 46 H 1.08000 * 119.99828 * 180.02562 * 29 28 27 47 47 H 1.08001 * 120.00381 * 359.97438 * 30 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5001 -0.8264 1.1906 6 6 4.1837 -1.4389 2.2067 7 1 3.6467 -1.8441 3.0516 8 6 5.5671 -1.5389 2.1510 9 7 6.2217 -1.0454 1.1211 10 14 6.4999 -2.3738 3.5374 11 1 6.0432 -3.7811 3.6641 12 1 7.9546 -2.3507 3.2396 13 1 6.2433 -1.6537 4.8105 14 7 2.0183 -0.6906 -1.1961 15 6 2.1471 -0.0183 -2.3571 16 8 1.8582 1.1584 -2.4116 17 6 2.6500 -0.7285 -3.5875 18 1 3.6092 -1.1983 -3.3703 19 8 2.8093 0.2140 -4.6521 20 6 1.5882 0.8502 -5.0411 21 6 0.5770 -0.2193 -5.4639 22 8 0.4177 -1.1618 -4.3993 23 6 1.6388 -1.7980 -4.0103 24 1 2.0382 -2.3648 -4.8513 25 6 1.3759 -2.7279 -2.8539 26 6 0.4324 -2.3952 -1.9000 27 6 0.1882 -3.2502 -0.8416 28 6 0.8944 -4.4336 -0.7320 29 6 1.8414 -4.7640 -1.6832 30 6 2.0824 -3.9109 -2.7440 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.7516 -0.1584 2.1370 35 1 1.6054 -1.7198 1.2951 36 1 3.9823 -0.4627 0.4317 37 1 7.1883 -1.1157 1.0819 38 1 2.2490 -1.6317 -1.1526 39 1 1.1888 1.4170 -4.2001 40 1 1.7786 1.5237 -5.8768 41 1 -0.3820 0.2514 -5.6803 42 1 0.9401 -0.7322 -6.3545 43 1 -0.1162 -1.4686 -1.9833 44 1 -0.5519 -2.9922 -0.0987 45 1 0.7060 -5.1000 0.0967 46 1 2.3928 -5.6886 -1.5978 47 1 2.8225 -4.1690 -3.4871 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754270954.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:28 Heat of formation + Delta-G solvation = -82.653173 kcal Electronic energy + Delta-G solvation = -31406.117531 eV Core-core repulsion = 27361.505597 eV Total energy + Delta-G solvation = -4044.611934 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.41269 -39.98977 -39.78340 -37.66361 -36.96387 -35.48725 -34.40037 -32.81753 -31.76673 -31.45782 -30.83568 -28.84591 -27.44049 -26.06450 -24.64444 -24.00315 -23.20159 -22.60356 -21.86774 -21.19221 -19.20574 -18.36745 -18.26446 -18.03052 -17.75596 -17.22053 -16.69169 -16.52367 -16.48419 -15.92797 -15.72009 -15.38748 -15.29891 -15.18528 -14.93991 -14.62029 -14.29741 -14.02475 -13.84925 -13.73609 -13.58789 -13.45190 -13.30628 -13.12180 -12.89553 -12.72874 -12.60599 -12.22948 -12.17976 -12.03600 -11.92777 -11.85694 -11.68786 -11.54367 -10.96533 -10.88144 -10.25725 -10.04354 -9.62589 -9.39048 -8.99311 -7.91957 -5.21580 0.34986 0.56048 1.48916 1.50712 1.51612 1.57525 2.12310 2.55122 2.56791 2.57927 2.88305 3.41914 3.45910 3.59482 3.64711 3.83732 3.96580 3.99263 4.05884 4.10524 4.19612 4.22691 4.29929 4.35146 4.36978 4.42151 4.51379 4.63696 4.69811 4.77266 4.80037 4.86061 4.91978 4.97334 5.04542 5.11530 5.18865 5.30365 5.51585 5.55331 5.57662 5.60635 5.69506 5.77819 5.97557 6.10680 6.27823 6.51399 7.17731 7.35222 8.08020 8.32449 9.31077 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012474 B = 0.004483 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.204606 B = 6244.487566 C = 6807.694140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.138 3.862 3 H 0.055 0.945 4 C 0.147 3.853 5 N -0.741 5.741 6 C -0.241 4.241 7 H 0.079 0.921 8 C -0.071 4.071 9 N -0.969 5.969 10 Si 0.971 3.029 11 H -0.274 1.274 12 H -0.299 1.299 13 H -0.281 1.281 14 N -0.692 5.692 15 C 0.495 3.505 16 O -0.570 6.570 17 C 0.044 3.956 18 H 0.139 0.861 19 O -0.366 6.366 20 C -0.003 4.003 21 C 0.028 3.972 22 O -0.380 6.380 23 C 0.124 3.876 24 H 0.108 0.892 25 C -0.127 4.127 26 C -0.077 4.077 27 C -0.137 4.137 28 C -0.107 4.107 29 C -0.132 4.132 30 C -0.104 4.104 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.036 0.964 35 H 0.041 0.959 36 H 0.372 0.628 37 H 0.250 0.750 38 H 0.410 0.590 39 H 0.071 0.929 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.079 0.921 43 H 0.120 0.880 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.141 0.859 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.955 -5.974 -12.297 20.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.033 3.967 3 H 0.073 0.927 4 C 0.021 3.979 5 N -0.384 5.384 6 C -0.373 4.373 7 H 0.097 0.903 8 C -0.264 4.264 9 N -0.620 5.620 10 Si 0.800 3.200 11 H -0.200 1.200 12 H -0.226 1.226 13 H -0.208 1.208 14 N -0.347 5.347 15 C 0.281 3.719 16 O -0.451 6.451 17 C -0.017 4.017 18 H 0.156 0.844 19 O -0.283 6.283 20 C -0.079 4.079 21 C -0.049 4.049 22 O -0.300 6.300 23 C 0.065 3.935 24 H 0.125 0.875 25 C -0.128 4.128 26 C -0.096 4.096 27 C -0.155 4.155 28 C -0.125 4.125 29 C -0.150 4.150 30 C -0.122 4.122 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.203 0.797 37 H 0.058 0.942 38 H 0.250 0.750 39 H 0.089 0.911 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.097 0.903 43 H 0.138 0.862 44 H 0.155 0.845 45 H 0.156 0.844 46 H 0.159 0.841 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -15.147 -5.223 -12.160 20.114 hybrid contribution 1.298 -0.151 0.561 1.422 sum -13.849 -5.374 -11.599 18.847 Atomic orbital electron populations 1.22170 0.92712 1.03534 1.02558 1.21104 0.95486 0.95948 0.84153 0.92673 1.21106 0.84178 0.97965 0.94680 1.42488 1.01708 1.69928 1.24251 1.19567 0.89822 1.28350 0.99567 0.90345 1.25512 0.97467 1.03008 1.00368 1.69826 1.06991 1.52809 1.32333 0.85249 0.77048 0.78735 0.78920 1.19989 1.22581 1.20761 1.46604 1.64782 1.14564 1.08720 1.21425 0.77410 0.87146 0.85887 1.90557 1.52239 1.17048 1.85224 1.22947 1.02377 0.90535 0.85865 0.84410 1.88146 1.32593 1.57194 1.50395 1.23775 0.85560 0.96219 1.02350 1.23450 1.01647 0.90122 0.89644 1.88106 1.29545 1.57441 1.54876 1.21304 0.84913 0.90606 0.96640 0.87463 1.19490 1.00470 0.96256 0.96544 1.21133 0.96250 0.98774 0.93442 1.21327 1.01127 0.94628 0.98460 1.21504 0.95346 0.96900 0.98779 1.21376 0.98502 1.00619 0.94545 1.21188 0.99043 0.92641 0.99280 0.92987 0.90191 0.90196 0.94614 0.94096 0.79668 0.94166 0.75039 0.91121 0.85678 0.85609 0.90284 0.86244 0.84476 0.84369 0.84115 0.83910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.00 8.10 71.98 0.58 -3.41 16 2 C 0.14 4.73 2.73 44.99 0.12 4.86 16 3 H 0.06 2.23 7.58 -2.39 -0.02 2.21 16 4 C 0.15 5.64 5.82 86.38 0.50 6.15 16 5 N -0.74 -36.73 5.43 -343.43 -1.87 -38.60 16 6 C -0.24 -13.07 9.99 84.03 0.84 -12.23 16 7 H 0.08 4.03 7.83 -2.91 -0.02 4.00 16 8 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 9 N -0.97 -58.94 13.06 21.65 0.28 -58.65 16 10 Si 0.97 45.34 29.55 68.60 2.03 47.36 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 12 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 13 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 14 N -0.69 -23.33 2.27 -442.52 -1.01 -24.33 16 15 C 0.49 17.49 6.05 87.66 0.53 18.02 16 16 O -0.57 -23.30 13.51 15.90 0.21 -23.08 16 17 C 0.04 1.32 3.40 29.89 0.10 1.42 16 18 H 0.14 4.01 8.14 -2.39 -0.02 3.99 16 19 O -0.37 -11.12 10.51 -122.91 -1.29 -12.41 16 20 C 0.00 -0.08 6.59 72.03 0.47 0.40 16 21 C 0.03 0.54 7.05 72.03 0.51 1.05 16 22 O -0.38 -9.40 9.38 -136.01 -1.28 -10.68 16 23 C 0.12 2.98 2.79 29.90 0.08 3.06 16 24 H 0.11 2.12 8.06 -2.39 -0.02 2.10 16 25 C -0.13 -3.08 3.53 -19.86 -0.07 -3.15 16 26 C -0.08 -1.92 4.74 22.27 0.11 -1.82 16 27 C -0.14 -3.10 9.04 22.27 0.20 -2.90 16 28 C -0.11 -2.35 10.05 22.27 0.22 -2.12 16 29 C -0.13 -2.87 10.05 22.27 0.22 -2.65 16 30 C -0.10 -2.28 9.68 22.27 0.22 -2.06 16 31 H 0.05 1.46 8.05 -2.39 -0.02 1.44 16 32 H 0.08 1.82 4.87 -2.38 -0.01 1.81 16 33 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.37 20.29 7.33 -92.71 -0.68 19.61 16 37 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 38 H 0.41 13.70 5.49 -92.71 -0.51 13.19 16 39 H 0.07 2.20 5.44 -2.39 -0.01 2.18 16 40 H 0.13 2.41 8.14 -2.38 -0.02 2.39 16 41 H 0.13 1.88 8.14 -2.39 -0.02 1.87 16 42 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.12 3.22 5.48 -2.91 -0.02 3.21 16 44 H 0.14 2.61 7.11 -2.91 -0.02 2.59 16 45 H 0.14 2.50 8.06 -2.91 -0.02 2.47 16 46 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 47 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -70.44 366.84 2.01 -68.42 By element: Atomic # 1 Polarization: 51.09 SS G_CDS: -0.19 Total: 50.91 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 5.11 Total: 1.07 kcal Atomic # 7 Polarization: -119.00 SS G_CDS: -2.59 Total: -121.59 kcal Atomic # 8 Polarization: -43.82 SS G_CDS: -2.35 Total: -46.17 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -70.44 2.01 -68.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754270954.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.230 kcal (2) G-P(sol) polarization free energy of solvation -70.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds