Wall clock time and date at job start Tue Mar 31 2020 18:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47197 * 2 1 4 4 C 1.50701 * 109.46934 * 240.00078 * 2 1 3 5 5 O 1.21279 * 119.99657 * 239.99652 * 4 2 1 6 6 N 1.34774 * 120.00293 * 60.00133 * 4 2 1 7 7 C 1.46499 * 119.99671 * 179.97438 * 6 4 2 8 8 C 1.53006 * 109.46724 * 179.97438 * 7 6 4 9 9 H 1.08990 * 109.43463 * 58.83214 * 8 7 6 10 10 C 1.53147 * 109.43284 * 178.74630 * 8 7 6 11 11 C 1.53695 * 108.88269 * 66.13294 * 10 8 7 12 12 H 1.09002 * 112.10104 * 187.61394 * 11 10 8 13 13 C 1.54609 * 107.83224 * 312.22692 * 11 10 8 14 14 C 1.55887 * 104.90094 * 88.64820 * 13 11 10 15 15 C 1.54609 * 103.99517 * 0.02640 * 14 13 11 16 16 H 1.08998 * 112.19000 * 147.20178 * 15 14 13 17 17 C 1.53142 * 109.40015 * 298.94430 * 8 7 6 18 18 N 1.48288 * 104.81647 * 25.18290 * 15 14 13 19 19 C 1.36938 * 128.21254 * 138.10837 * 18 15 14 20 20 H 1.07993 * 119.99912 * 157.70798 * 19 18 15 21 21 C 1.38808 * 119.99555 * 337.70722 * 19 18 15 22 22 N 1.31632 * 119.99724 * 159.87239 * 21 19 18 23 23 Si 1.86793 * 120.00523 * 339.87080 * 21 19 18 24 24 H 1.48504 * 109.47055 * 92.01625 * 23 21 19 25 25 H 1.48495 * 109.47737 * 212.01479 * 23 21 19 26 26 H 1.48495 * 109.47143 * 332.01762 * 23 21 19 27 27 C 1.52993 * 109.46965 * 119.99850 * 2 1 3 28 28 F 1.39904 * 109.47359 * 179.97438 * 27 2 1 29 29 F 1.39899 * 109.47452 * 299.99923 * 27 2 1 30 30 F 1.39902 * 109.47357 * 60.00059 * 27 2 1 31 31 H 1.09001 * 109.47209 * 300.00223 * 1 2 3 32 32 H 1.09009 * 109.47026 * 59.99961 * 1 2 3 33 33 H 1.08999 * 109.47217 * 179.97438 * 1 2 3 34 34 H 0.96998 * 119.99882 * 359.97438 * 6 4 2 35 35 H 1.09004 * 109.47084 * 60.00326 * 7 6 4 36 36 H 1.08997 * 109.47512 * 299.99939 * 7 6 4 37 37 H 1.08999 * 109.57125 * 306.31022 * 10 8 7 38 38 H 1.08997 * 109.66649 * 186.01457 * 10 8 7 39 39 H 1.09006 * 110.38404 * 207.48336 * 13 11 10 40 40 H 1.09007 * 110.38133 * 329.84377 * 13 11 10 41 41 H 1.09002 * 110.92707 * 241.36433 * 14 13 11 42 42 H 1.09003 * 110.56568 * 118.50294 * 14 13 11 43 43 H 1.09002 * 109.56910 * 53.66310 * 17 8 7 44 44 H 1.09000 * 109.57500 * 174.02954 * 17 8 7 45 45 H 0.96999 * 120.00030 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6964 -1.1192 6 7 1.7067 -0.2500 -2.4546 7 6 2.1956 -0.9403 -3.6507 8 6 1.6849 -0.2195 -4.9000 9 1 2.0306 0.8141 -4.8890 10 6 2.2220 -0.9233 -6.1496 11 6 1.6062 -2.3291 -6.2321 12 1 2.0521 -2.9261 -7.0276 13 6 1.7455 -2.9894 -4.8411 14 6 0.4595 -2.5687 -4.0670 15 6 -0.3185 -1.6976 -5.0800 16 1 -1.3978 -1.7942 -4.9624 17 6 0.1538 -0.2446 -4.9116 18 7 0.1439 -2.1595 -6.4111 19 6 -0.6025 -2.3781 -7.5382 20 1 -0.1310 -2.3618 -8.5096 21 6 -1.9651 -2.6206 -7.4319 22 7 -2.7489 -2.4400 -8.4740 23 14 -2.6866 -3.2031 -5.8105 24 1 -3.1291 -2.0295 -5.0154 25 1 -3.8491 -4.0882 -6.0753 26 1 -1.6551 -3.9547 -5.0513 27 6 2.0399 -0.7212 1.2492 28 9 3.4390 -0.7217 1.2490 29 9 1.5736 -0.0617 2.3915 30 9 1.5736 -2.0402 1.2493 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.1488 0.5385 -2.5436 35 1 1.8325 -1.9682 -3.6508 36 1 3.2855 -0.9400 -3.6505 37 1 3.3072 -1.0033 -6.0857 38 1 1.9498 -0.3528 -7.0375 39 1 1.7909 -4.0742 -4.9386 40 1 2.6334 -2.6158 -4.3307 41 1 0.7116 -1.9866 -3.1806 42 1 -0.1262 -3.4460 -3.7922 43 1 -0.2251 0.1558 -3.9713 44 1 -0.2150 0.3577 -5.7419 45 1 -3.7010 -2.6098 -8.3999 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754831403.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:50 Heat of formation + Delta-G solvation = -69.258757 kcal Electronic energy + Delta-G solvation = -31605.535985 eV Core-core repulsion = 27019.648136 eV Total energy + Delta-G solvation = -4585.887848 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.26114 -47.78958 -47.65296 -41.63170 -39.50796 -35.09150 -34.41205 -32.84836 -31.70724 -30.83003 -30.63818 -27.04189 -26.75242 -24.18927 -23.70471 -23.03629 -21.09129 -20.74269 -20.12987 -19.13661 -18.69241 -18.61243 -17.90405 -17.21858 -16.88361 -16.28360 -15.67000 -15.37150 -15.05875 -14.62400 -14.37088 -14.12225 -13.94645 -13.85715 -13.80876 -13.61482 -13.58003 -13.40844 -13.31064 -12.86441 -12.82561 -12.49808 -12.32033 -12.24801 -11.95664 -11.76489 -11.72403 -11.58760 -11.26013 -10.80178 -10.54714 -10.39077 -10.17532 -10.01877 -9.81656 -9.76292 -9.63264 -9.31610 -8.69855 -8.41718 -7.11965 -5.99419 -3.30974 2.31172 2.35218 2.91221 3.24107 3.43649 3.44906 3.46164 3.77361 3.93036 4.44128 4.48286 4.49027 4.61433 4.74165 4.98770 5.03602 5.08233 5.16106 5.20108 5.28043 5.37033 5.54201 5.56783 5.59334 5.67399 5.71013 5.83730 5.92820 6.02515 6.11093 6.17426 6.25306 6.28829 6.42529 6.51987 6.54733 6.61332 6.71173 6.77550 6.91247 7.28295 7.62833 7.96001 8.28425 8.75388 9.62352 10.21410 11.17165 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.019564 B = 0.003684 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.844290 B = 7597.980348 C = 8231.354603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.165 4.165 3 H 0.137 0.863 4 C 0.515 3.485 5 O -0.522 6.522 6 N -0.712 5.712 7 C 0.001 3.999 8 C -0.082 4.082 9 H 0.060 0.940 10 C -0.121 4.121 11 C 0.152 3.848 12 H 0.079 0.921 13 C -0.162 4.162 14 C -0.169 4.169 15 C 0.139 3.861 16 H 0.073 0.927 17 C -0.125 4.125 18 N -0.595 5.595 19 C -0.233 4.233 20 H 0.092 0.908 21 C 0.023 3.977 22 N -0.910 5.910 23 Si 0.877 3.123 24 H -0.289 1.289 25 H -0.304 1.304 26 H -0.264 1.264 27 C 0.473 3.527 28 F -0.174 7.174 29 F -0.183 7.183 30 F -0.170 7.170 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.397 0.603 35 H 0.195 0.805 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.060 0.940 43 H 0.047 0.953 44 H 0.071 0.929 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.868 8.072 17.210 20.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.187 4.187 3 H 0.155 0.845 4 C 0.299 3.701 5 O -0.398 6.398 6 N -0.364 5.364 7 C -0.117 4.117 8 C -0.101 4.101 9 H 0.078 0.922 10 C -0.161 4.161 11 C 0.045 3.955 12 H 0.097 0.903 13 C -0.200 4.200 14 C -0.207 4.207 15 C 0.032 3.968 16 H 0.090 0.910 17 C -0.165 4.165 18 N -0.317 5.317 19 C -0.360 4.360 20 H 0.110 0.890 21 C -0.176 4.176 22 N -0.553 5.553 23 Si 0.710 3.290 24 H -0.217 1.217 25 H -0.233 1.233 26 H -0.189 1.189 27 C 0.418 3.582 28 F -0.155 7.155 29 F -0.165 7.165 30 F -0.152 7.152 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.232 0.768 35 H 0.210 0.790 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.111 0.889 41 H 0.115 0.885 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.090 0.910 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.149 7.282 17.051 20.675 hybrid contribution -0.736 0.311 1.037 1.309 sum 8.413 7.594 18.088 21.345 Atomic orbital electron populations 1.21881 0.89197 1.05095 1.04920 1.22665 1.01451 1.02949 0.91665 0.84512 1.19664 0.81163 0.85034 0.84270 1.90813 1.37212 1.25413 1.86392 1.46190 1.52679 1.31895 1.05608 1.25304 0.99111 1.05094 0.82228 1.21185 0.96409 0.98458 0.94037 0.92158 1.22117 0.98356 0.98746 0.96923 1.21622 0.86462 0.93012 0.94422 0.90270 1.23644 0.97359 1.01020 0.98000 1.23760 0.97018 1.00679 0.99227 1.21723 0.97162 0.91345 0.86592 0.91004 1.22176 0.94334 0.99512 1.00438 1.45463 1.02304 1.75991 1.07987 1.18629 0.90103 1.42869 0.84435 0.89033 1.25043 0.96068 0.99901 0.96569 1.69809 1.04395 1.50968 1.30173 0.86957 0.78391 0.78788 0.84895 1.21748 1.23254 1.18930 1.19763 0.75924 0.77993 0.84478 1.93216 1.29295 1.96366 1.96661 1.93178 1.88587 1.80886 1.53821 1.93218 1.88253 1.37043 1.96639 0.89914 0.89557 0.90272 0.76826 0.79035 0.92540 0.92674 0.91036 0.91882 0.88858 0.88517 0.92092 0.93487 0.90994 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.85 37.16 0.33 -0.74 16 2 C -0.16 -1.42 2.71 -91.77 -0.25 -1.67 16 3 H 0.14 0.76 8.14 -51.93 -0.42 0.34 16 4 C 0.52 6.15 6.70 -10.99 -0.07 6.08 16 5 O -0.52 -8.32 14.83 5.56 0.08 -8.24 16 6 N -0.71 -7.70 4.30 -60.29 -0.26 -7.96 16 7 C 0.00 0.01 2.65 -4.04 -0.01 0.00 16 8 C -0.08 -1.12 2.75 -90.47 -0.25 -1.36 16 9 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 10 C -0.12 -1.84 5.37 -26.29 -0.14 -1.98 16 11 C 0.15 2.74 4.32 -65.73 -0.28 2.46 16 12 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 13 C -0.16 -2.64 5.75 -24.34 -0.14 -2.78 16 14 C -0.17 -2.93 5.61 -24.34 -0.14 -3.06 16 15 C 0.14 2.74 2.84 -65.73 -0.19 2.55 16 16 H 0.07 1.60 3.07 -51.93 -0.16 1.44 16 17 C -0.13 -1.99 5.27 -26.29 -0.14 -2.13 16 18 N -0.60 -13.27 2.57 -152.77 -0.39 -13.66 16 19 C -0.23 -6.29 10.75 -15.06 -0.16 -6.45 16 20 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 21 C 0.02 0.64 5.47 -17.43 -0.10 0.55 16 22 N -0.91 -27.39 13.97 55.49 0.78 -26.62 16 23 Si 0.88 21.80 24.70 -169.99 -4.20 17.60 16 24 H -0.29 -6.93 6.65 56.52 0.38 -6.56 16 25 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 26 H -0.26 -6.35 5.60 56.52 0.32 -6.03 16 27 C 0.47 5.18 2.42 37.15 0.09 5.27 16 28 F -0.17 -2.20 16.40 2.25 0.04 -2.17 16 29 F -0.18 -1.80 16.80 2.25 0.04 -1.77 16 30 F -0.17 -2.22 15.88 2.25 0.04 -2.19 16 31 H 0.08 0.45 7.80 -51.93 -0.41 0.05 16 32 H 0.09 0.47 7.56 -51.92 -0.39 0.08 16 33 H 0.08 0.66 7.80 -51.93 -0.41 0.25 16 34 H 0.40 3.30 6.81 -40.82 -0.28 3.02 16 35 H 0.19 2.82 1.12 -165.03 -0.19 2.63 16 36 H 0.06 0.75 7.96 -51.93 -0.41 0.33 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.09 1.34 4.83 -51.93 -0.25 1.09 16 41 H 0.10 1.48 4.06 -51.93 -0.21 1.27 16 42 H 0.06 1.14 6.97 -51.93 -0.36 0.78 16 43 H 0.05 0.61 6.78 -51.93 -0.35 0.26 16 44 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 338.40 15.07 5.10 5.10 Total: -1.00 -32.07 338.40 -6.27 -38.34 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -6.04 Total: 4.82 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -1.45 Total: -3.26 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: 0.12 Total: -48.24 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.08 Total: -8.24 kcal Atomic # 9 Polarization: -6.23 SS G_CDS: 0.11 Total: -6.12 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.20 Total: 17.60 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.07 -6.27 -38.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754831403.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.914 kcal (2) G-P(sol) polarization free energy of solvation -32.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds