Wall clock time and date at job start Tue Mar 31 2020 18:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47197 * 2 1 4 4 C 1.50701 * 109.46934 * 240.00078 * 2 1 3 5 5 O 1.21279 * 119.99657 * 239.99652 * 4 2 1 6 6 N 1.34774 * 120.00293 * 60.00133 * 4 2 1 7 7 C 1.46499 * 119.99671 * 179.97438 * 6 4 2 8 8 C 1.53006 * 109.46724 * 179.97438 * 7 6 4 9 9 H 1.08990 * 109.43463 * 58.83214 * 8 7 6 10 10 C 1.53147 * 109.43284 * 178.74630 * 8 7 6 11 11 C 1.53695 * 108.88269 * 66.13294 * 10 8 7 12 12 H 1.09002 * 112.10104 * 187.61394 * 11 10 8 13 13 C 1.54609 * 107.83224 * 312.22692 * 11 10 8 14 14 C 1.55887 * 104.90094 * 88.64820 * 13 11 10 15 15 C 1.54609 * 103.99517 * 0.02640 * 14 13 11 16 16 H 1.08998 * 112.19000 * 147.20178 * 15 14 13 17 17 C 1.53142 * 109.40015 * 298.94430 * 8 7 6 18 18 N 1.48288 * 104.81647 * 25.18290 * 15 14 13 19 19 C 1.36938 * 128.21254 * 138.10837 * 18 15 14 20 20 H 1.07993 * 119.99912 * 157.70798 * 19 18 15 21 21 C 1.38808 * 119.99555 * 337.70722 * 19 18 15 22 22 N 1.31632 * 119.99724 * 159.87239 * 21 19 18 23 23 Si 1.86793 * 120.00523 * 339.87080 * 21 19 18 24 24 H 1.48504 * 109.47055 * 92.01625 * 23 21 19 25 25 H 1.48495 * 109.47737 * 212.01479 * 23 21 19 26 26 H 1.48495 * 109.47143 * 332.01762 * 23 21 19 27 27 C 1.52993 * 109.46965 * 119.99850 * 2 1 3 28 28 F 1.39904 * 109.47359 * 179.97438 * 27 2 1 29 29 F 1.39899 * 109.47452 * 299.99923 * 27 2 1 30 30 F 1.39902 * 109.47357 * 60.00059 * 27 2 1 31 31 H 1.09001 * 109.47209 * 300.00223 * 1 2 3 32 32 H 1.09009 * 109.47026 * 59.99961 * 1 2 3 33 33 H 1.08999 * 109.47217 * 179.97438 * 1 2 3 34 34 H 0.96998 * 119.99882 * 359.97438 * 6 4 2 35 35 H 1.09004 * 109.47084 * 60.00326 * 7 6 4 36 36 H 1.08997 * 109.47512 * 299.99939 * 7 6 4 37 37 H 1.08999 * 109.57125 * 306.31022 * 10 8 7 38 38 H 1.08997 * 109.66649 * 186.01457 * 10 8 7 39 39 H 1.09006 * 110.38404 * 207.48336 * 13 11 10 40 40 H 1.09007 * 110.38133 * 329.84377 * 13 11 10 41 41 H 1.09002 * 110.92707 * 241.36433 * 14 13 11 42 42 H 1.09003 * 110.56568 * 118.50294 * 14 13 11 43 43 H 1.09002 * 109.56910 * 53.66310 * 17 8 7 44 44 H 1.09000 * 109.57500 * 174.02954 * 17 8 7 45 45 H 0.96999 * 120.00030 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6964 -1.1192 6 7 1.7067 -0.2500 -2.4546 7 6 2.1956 -0.9403 -3.6507 8 6 1.6849 -0.2195 -4.9000 9 1 2.0306 0.8141 -4.8890 10 6 2.2220 -0.9233 -6.1496 11 6 1.6062 -2.3291 -6.2321 12 1 2.0521 -2.9261 -7.0276 13 6 1.7455 -2.9894 -4.8411 14 6 0.4595 -2.5687 -4.0670 15 6 -0.3185 -1.6976 -5.0800 16 1 -1.3978 -1.7942 -4.9624 17 6 0.1538 -0.2446 -4.9116 18 7 0.1439 -2.1595 -6.4111 19 6 -0.6025 -2.3781 -7.5382 20 1 -0.1310 -2.3618 -8.5096 21 6 -1.9651 -2.6206 -7.4319 22 7 -2.7489 -2.4400 -8.4740 23 14 -2.6866 -3.2031 -5.8105 24 1 -3.1291 -2.0295 -5.0154 25 1 -3.8491 -4.0882 -6.0753 26 1 -1.6551 -3.9547 -5.0513 27 6 2.0399 -0.7212 1.2492 28 9 3.4390 -0.7217 1.2490 29 9 1.5736 -0.0617 2.3915 30 9 1.5736 -2.0402 1.2493 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.1488 0.5385 -2.5436 35 1 1.8325 -1.9682 -3.6508 36 1 3.2855 -0.9400 -3.6505 37 1 3.3072 -1.0033 -6.0857 38 1 1.9498 -0.3528 -7.0375 39 1 1.7909 -4.0742 -4.9386 40 1 2.6334 -2.6158 -4.3307 41 1 0.7116 -1.9866 -3.1806 42 1 -0.1262 -3.4460 -3.7922 43 1 -0.2251 0.1558 -3.9713 44 1 -0.2150 0.3577 -5.7419 45 1 -3.7010 -2.6098 -8.3999 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754831403.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:49 Heat of formation + Delta-G solvation = -90.530964 kcal Electronic energy + Delta-G solvation = -31606.458417 eV Core-core repulsion = 27019.648136 eV Total energy + Delta-G solvation = -4586.810281 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.09579 -48.60089 -48.54900 -42.88376 -40.52152 -36.36416 -35.25907 -34.47055 -32.99336 -32.39686 -32.13077 -28.46904 -27.40241 -25.59996 -25.04305 -24.19266 -22.43646 -21.73350 -21.49335 -20.37011 -19.70836 -19.46581 -18.84851 -18.75261 -17.86216 -17.66797 -17.11688 -16.32358 -16.10536 -15.53644 -15.43637 -15.33319 -15.10881 -14.98362 -14.86805 -14.74825 -14.69552 -14.66714 -14.22932 -14.10919 -14.05415 -13.60825 -13.54032 -13.46461 -13.16052 -13.10508 -12.93461 -12.79943 -12.46183 -12.38614 -12.22186 -11.91101 -11.52696 -11.38102 -11.19026 -11.13097 -10.98412 -10.81843 -10.52930 -9.54881 -8.97802 -8.15926 -5.40965 1.23666 1.38974 1.46324 1.47876 1.56560 2.08456 2.41193 2.68800 3.02894 3.03936 3.15525 3.29642 3.69564 3.73520 3.81735 3.84548 3.88323 4.02350 4.11033 4.15415 4.30949 4.33098 4.46890 4.53595 4.63790 4.68858 4.70027 4.77629 4.84863 4.90266 4.98734 5.06524 5.13750 5.18782 5.22310 5.29469 5.39763 5.44040 5.47335 5.59578 5.75669 6.15511 6.44725 6.76809 7.12682 7.54735 8.25354 9.05230 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.019564 B = 0.003684 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.844290 B = 7597.980348 C = 8231.354603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.153 4.153 3 H 0.176 0.824 4 C 0.514 3.486 5 O -0.565 6.565 6 N -0.702 5.702 7 C 0.008 3.992 8 C -0.071 4.071 9 H 0.091 0.909 10 C -0.116 4.116 11 C 0.142 3.858 12 H 0.068 0.932 13 C -0.153 4.153 14 C -0.161 4.161 15 C 0.125 3.875 16 H 0.046 0.954 17 C -0.120 4.120 18 N -0.618 5.618 19 C -0.214 4.214 20 H 0.058 0.942 21 C -0.038 4.038 22 N -0.961 5.961 23 Si 0.939 3.061 24 H -0.275 1.275 25 H -0.319 1.319 26 H -0.255 1.255 27 C 0.465 3.535 28 F -0.187 7.187 29 F -0.177 7.177 30 F -0.187 7.187 31 H 0.100 0.900 32 H 0.107 0.893 33 H 0.061 0.939 34 H 0.413 0.587 35 H 0.175 0.825 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.052 0.948 39 H 0.056 0.944 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.043 0.957 43 H 0.084 0.916 44 H 0.048 0.952 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.253 10.156 20.078 24.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.175 4.175 3 H 0.193 0.807 4 C 0.299 3.701 5 O -0.444 6.444 6 N -0.354 5.354 7 C -0.111 4.111 8 C -0.090 4.090 9 H 0.110 0.890 10 C -0.156 4.156 11 C 0.036 3.964 12 H 0.087 0.913 13 C -0.191 4.191 14 C -0.199 4.199 15 C 0.020 3.980 16 H 0.064 0.936 17 C -0.159 4.159 18 N -0.341 5.341 19 C -0.343 4.343 20 H 0.075 0.925 21 C -0.232 4.232 22 N -0.609 5.609 23 Si 0.771 3.229 24 H -0.203 1.203 25 H -0.248 1.248 26 H -0.180 1.180 27 C 0.411 3.589 28 F -0.169 7.169 29 F -0.158 7.158 30 F -0.169 7.169 31 H 0.118 0.882 32 H 0.126 0.874 33 H 0.080 0.920 34 H 0.251 0.749 35 H 0.190 0.810 36 H 0.083 0.917 37 H 0.105 0.895 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.061 0.939 43 H 0.102 0.898 44 H 0.067 0.933 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.564 9.407 19.966 24.469 hybrid contribution -1.047 -0.318 0.123 1.101 sum 9.518 9.088 20.089 24.016 Atomic orbital electron populations 1.21978 0.87691 1.04644 1.06901 1.22714 1.02432 1.03866 0.88508 0.80696 1.20152 0.80303 0.84478 0.85200 1.90807 1.39180 1.27403 1.87050 1.46008 1.52540 1.32173 1.04708 1.24903 0.99607 1.04029 0.82587 1.21102 0.94382 1.00073 0.93415 0.89049 1.22023 1.00077 0.96247 0.97208 1.21890 0.84009 0.95250 0.95289 0.91335 1.23647 0.98155 1.00605 0.96679 1.23794 0.96736 0.99868 0.99507 1.21938 0.96132 0.94374 0.85597 0.93635 1.22098 0.96217 0.96185 1.01440 1.45554 1.04077 1.76692 1.07760 1.18539 0.90318 1.40267 0.85164 0.92452 1.25617 0.96677 1.01323 0.99598 1.69942 1.04483 1.53927 1.32532 0.85945 0.77142 0.78392 0.81423 1.20267 1.24830 1.17998 1.20198 0.75381 0.77619 0.85744 1.93188 1.30506 1.96389 1.96789 1.93188 1.88398 1.80553 1.53704 1.93184 1.88374 1.38555 1.96784 0.88156 0.87446 0.91952 0.74910 0.80956 0.91674 0.89544 0.92923 0.92531 0.85962 0.85865 0.93869 0.89811 0.93278 0.93138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 8.85 71.98 0.64 -0.84 16 2 C -0.15 -2.01 2.71 -11.54 -0.03 -2.04 16 3 H 0.18 0.96 8.14 -2.39 -0.02 0.94 16 4 C 0.51 10.22 6.70 87.66 0.59 10.81 16 5 O -0.57 -16.45 14.83 -3.03 -0.04 -16.49 16 6 N -0.70 -11.63 4.30 -463.05 -1.99 -13.62 16 7 C 0.01 0.18 2.65 86.38 0.23 0.41 16 8 C -0.07 -1.63 2.75 -10.69 -0.03 -1.66 16 9 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 10 C -0.12 -3.19 5.37 30.88 0.17 -3.02 16 11 C 0.14 4.94 4.32 45.43 0.20 5.14 16 12 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 13 C -0.15 -4.64 5.75 32.14 0.18 -4.45 16 14 C -0.16 -5.21 5.61 32.14 0.18 -5.03 16 15 C 0.13 4.74 2.84 45.43 0.13 4.87 16 16 H 0.05 1.97 3.07 -2.39 -0.01 1.97 16 17 C -0.12 -3.45 5.27 30.88 0.16 -3.29 16 18 N -0.62 -27.54 2.57 -637.23 -1.64 -29.17 16 19 C -0.21 -11.95 10.75 84.03 0.90 -11.04 16 20 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 21 C -0.04 -2.22 5.47 84.86 0.46 -1.75 16 22 N -0.96 -60.43 13.97 21.65 0.30 -60.13 16 23 Si 0.94 46.40 24.70 68.60 1.69 48.09 16 24 H -0.27 -12.75 6.65 99.48 0.66 -12.09 16 25 H -0.32 -16.30 7.11 99.48 0.71 -15.59 16 26 H -0.26 -12.00 5.60 99.48 0.56 -11.45 16 27 C 0.47 9.00 2.42 71.98 0.17 9.18 16 28 F -0.19 -4.37 16.40 44.97 0.74 -3.64 16 29 F -0.18 -3.00 16.80 44.97 0.76 -2.24 16 30 F -0.19 -4.63 15.88 44.97 0.71 -3.91 16 31 H 0.10 0.65 7.80 -2.39 -0.02 0.63 16 32 H 0.11 0.59 7.56 -2.38 -0.02 0.57 16 33 H 0.06 0.84 7.80 -2.39 -0.02 0.82 16 34 H 0.41 4.34 6.81 -92.71 -0.63 3.71 16 35 H 0.17 4.40 1.12 -108.62 -0.12 4.28 16 36 H 0.07 1.37 7.96 -2.39 -0.02 1.35 16 37 H 0.09 1.87 8.14 -2.39 -0.02 1.86 16 38 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 40 H 0.12 3.06 4.83 -2.38 -0.01 3.05 16 41 H 0.12 3.31 4.06 -2.39 -0.01 3.31 16 42 H 0.04 1.54 6.97 -2.39 -0.02 1.52 16 43 H 0.08 1.78 6.78 -2.39 -0.02 1.76 16 44 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -74.35 338.40 4.59 -69.76 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 0.11 Total: 14.09 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: 3.95 Total: -2.72 kcal Atomic # 7 Polarization: -99.60 SS G_CDS: -3.33 Total: -102.93 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.04 Total: -16.49 kcal Atomic # 9 Polarization: -12.00 SS G_CDS: 2.21 Total: -9.79 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.69 Total: 48.09 kcal Total: -74.35 4.59 -69.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754831403.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.773 kcal (2) G-P(sol) polarization free energy of solvation -74.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds