Wall clock time and date at job start Tue Mar 31 2020 18:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47123 * 2 1 4 4 C 1.46503 * 120.00259 * 90.00105 * 3 2 1 5 5 C 1.53001 * 109.47425 * 89.99474 * 4 3 2 6 6 H 1.09002 * 109.70079 * 59.99881 * 5 4 3 7 7 C 1.53466 * 109.70733 * 180.58087 * 5 4 3 8 8 O 1.43174 * 108.23540 * 179.38545 * 7 5 4 9 9 C 1.36108 * 116.72949 * 313.82423 * 8 7 5 10 10 C 1.38695 * 119.39064 * 197.14956 * 9 8 7 11 11 C 1.38197 * 120.06649 * 180.18006 * 10 9 8 12 12 C 1.38256 * 120.11083 * 359.97438 * 11 10 9 13 13 C 1.38200 * 120.11370 * 359.94418 * 12 11 10 14 14 C 1.38706 * 120.06549 * 0.02562 * 13 12 11 15 15 O 1.36111 * 119.39458 * 180.15404 * 14 13 12 16 16 C 1.34779 * 119.99918 * 269.99234 * 3 2 1 17 17 O 1.21277 * 119.99945 * 179.97438 * 16 3 2 18 18 C 1.50702 * 119.99638 * 0.02562 * 16 3 2 19 19 N 1.46497 * 109.46673 * 179.97438 * 18 16 3 20 20 C 1.46501 * 120.00398 * 270.00066 * 19 18 16 21 21 C 1.36942 * 119.99884 * 89.99964 * 19 18 16 22 22 H 1.07997 * 120.00002 * 20.27482 * 21 19 18 23 23 C 1.38811 * 119.99966 * 200.27143 * 21 19 18 24 24 N 1.31627 * 120.00052 * 15.02181 * 23 21 19 25 25 Si 1.86794 * 120.00095 * 195.01882 * 23 21 19 26 26 H 1.48508 * 109.47214 * 85.00571 * 25 23 21 27 27 H 1.48499 * 109.47591 * 205.00350 * 25 23 21 28 28 H 1.48500 * 109.47205 * 325.00511 * 25 23 21 29 29 H 1.08998 * 109.47436 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47379 * 300.00336 * 1 2 3 31 31 H 1.09000 * 109.46902 * 59.99750 * 1 2 3 32 32 H 1.09003 * 109.46915 * 119.99487 * 2 1 3 33 33 H 1.08996 * 109.47197 * 239.99773 * 2 1 3 34 34 H 1.08990 * 109.46985 * 210.00015 * 4 3 2 35 35 H 1.09001 * 109.46758 * 329.99744 * 4 3 2 36 36 H 1.08997 * 109.71051 * 299.12631 * 7 5 4 37 37 H 1.09002 * 109.71096 * 59.75706 * 7 5 4 38 38 H 1.08000 * 119.96805 * 0.16469 * 10 9 8 39 39 H 1.07997 * 119.94426 * 179.97438 * 11 10 9 40 40 H 1.07999 * 119.94156 * 179.97438 * 12 11 10 41 41 H 1.07995 * 119.96276 * 180.02562 * 13 12 11 42 42 H 1.08991 * 109.47019 * 299.99340 * 18 16 3 43 43 H 1.09000 * 109.47169 * 59.99638 * 18 16 3 44 44 H 1.09001 * 109.47242 * 95.09805 * 20 19 18 45 45 H 1.08997 * 109.47331 * 215.10287 * 20 19 18 46 46 H 1.08998 * 109.46879 * 335.09980 * 20 19 18 47 47 H 0.97000 * 119.99736 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 1.2687 5 6 3.7075 1.8314 1.7105 6 1 4.3918 2.2142 0.9532 7 6 3.9650 2.5408 3.0468 8 8 5.3183 2.2838 3.4370 9 6 5.7498 0.9966 3.3390 10 6 6.8953 0.6091 4.0182 11 6 7.3479 -0.6933 3.9256 12 6 6.6602 -1.6136 3.1564 13 6 5.5171 -1.2344 2.4784 14 6 5.0571 0.0711 2.5677 15 8 3.9281 0.4289 1.8969 16 6 2.2431 2.0165 -1.1672 17 8 2.6469 3.1601 -1.1672 18 6 1.9915 1.3061 -2.4723 19 7 2.3085 2.2038 -3.5858 20 6 1.2709 3.0756 -4.1422 21 6 3.5748 2.2280 -4.1066 22 1 4.2411 1.3935 -3.9452 23 6 4.0019 3.3251 -4.8420 24 7 3.3238 4.4523 -4.7965 25 14 5.5391 3.2018 -5.8961 26 1 5.1864 2.6307 -7.2209 27 1 6.1231 4.5546 -6.0800 28 1 6.5298 2.3219 -5.2257 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 1.8933 -0.5138 -0.8899 34 1 2.0956 3.1410 1.1383 35 1 1.5817 1.6878 2.0284 36 1 3.8130 3.6137 2.9287 37 1 3.2847 2.1539 3.8055 38 1 7.4342 1.3260 4.6198 39 1 8.2404 -0.9928 4.4549 40 1 7.0166 -2.6306 3.0856 41 1 4.9816 -1.9553 1.8786 42 1 2.6214 0.4185 -2.5301 43 1 0.9434 1.0123 -2.5299 44 1 1.3333 4.0585 -3.6752 45 1 1.4176 3.1744 -5.2177 46 1 0.2898 2.6425 -3.9477 47 1 3.6226 5.2190 -5.3101 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972732.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:06 Heat of formation + Delta-G solvation = -43.112055 kcal Electronic energy + Delta-G solvation = -29814.667058 eV Core-core repulsion = 25771.769756 eV Total energy + Delta-G solvation = -4042.897302 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.35662 -39.29015 -37.79740 -37.28707 -35.64418 -34.89576 -32.61282 -31.14671 -30.77326 -30.03352 -28.85787 -27.56413 -25.89532 -25.51863 -23.68223 -23.10228 -22.75303 -21.32449 -20.71252 -19.07043 -18.31128 -17.60344 -16.92981 -16.72389 -16.29637 -16.02430 -15.45995 -15.14158 -14.78743 -14.76675 -14.44602 -14.33425 -13.97695 -13.87491 -13.60900 -13.38820 -13.29532 -13.14164 -12.73337 -12.33339 -12.12556 -12.01523 -11.94679 -11.75060 -11.47145 -11.30704 -11.23723 -11.02745 -10.93800 -10.80217 -10.61944 -10.50636 -10.31606 -9.97753 -9.84313 -9.03559 -8.76123 -8.45170 -8.29093 -8.12753 -6.75519 -5.66105 -3.10703 1.17476 1.20880 2.89973 3.11110 3.34246 3.44537 3.48127 3.50000 3.52936 3.62156 4.18999 4.54343 4.57079 4.71184 4.74050 4.86789 4.99385 5.05490 5.12923 5.15997 5.27557 5.32674 5.35035 5.42008 5.52045 5.56218 5.60115 5.69485 5.77630 5.82901 5.89235 5.97382 6.01725 6.08450 6.16347 6.25469 6.32874 6.35083 6.51574 6.73424 6.82804 6.94843 7.35723 7.40055 7.76702 7.87151 7.95245 8.40730 9.04869 9.26281 9.88388 10.34978 11.38547 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011521 B = 0.003534 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.812233 B = 7921.664817 C = 9007.461017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.112 3.888 3 N -0.623 5.623 4 C 0.129 3.871 5 C 0.036 3.964 6 H 0.092 0.908 7 C 0.030 3.970 8 O -0.307 6.307 9 C 0.047 3.953 10 C -0.116 4.116 11 C -0.122 4.122 12 C -0.118 4.118 13 C -0.116 4.116 14 C 0.059 3.941 15 O -0.297 6.297 16 C 0.473 3.527 17 O -0.507 6.507 18 C 0.136 3.864 19 N -0.573 5.573 20 C 0.163 3.837 21 C -0.259 4.259 22 H 0.069 0.931 23 C 0.009 3.991 24 N -0.896 5.896 25 Si 0.904 3.096 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.280 1.280 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.078 0.922 36 H 0.124 0.876 37 H 0.076 0.924 38 H 0.132 0.868 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.134 0.866 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.034 0.966 45 H 0.047 0.953 46 H -0.003 1.003 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.372 -11.912 18.740 22.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.011 4.011 3 N -0.361 5.361 4 C 0.004 3.996 5 C -0.022 4.022 6 H 0.110 0.890 7 C -0.046 4.046 8 O -0.221 6.221 9 C 0.002 3.998 10 C -0.135 4.135 11 C -0.140 4.140 12 C -0.136 4.136 13 C -0.135 4.135 14 C 0.013 3.987 15 O -0.212 6.212 16 C 0.259 3.741 17 O -0.379 6.379 18 C 0.003 3.997 19 N -0.293 5.293 20 C 0.019 3.981 21 C -0.388 4.388 22 H 0.087 0.913 23 C -0.191 4.191 24 N -0.539 5.539 25 Si 0.734 3.266 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.206 1.206 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.121 0.879 35 H 0.097 0.903 36 H 0.142 0.858 37 H 0.095 0.905 38 H 0.150 0.850 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.151 0.849 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.053 0.947 45 H 0.066 0.934 46 H 0.015 0.985 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.178 -11.008 18.511 21.569 hybrid contribution 0.836 0.257 -0.338 0.937 sum -0.343 -10.751 18.173 21.118 Atomic orbital electron populations 1.22232 0.96586 1.01747 1.02334 1.21445 0.93552 0.82872 1.03239 1.48558 1.68252 1.14347 1.04974 1.21227 0.91040 0.99906 0.87414 1.23816 1.01528 0.79828 0.96991 0.89018 1.23617 0.81915 1.03202 0.95880 1.86304 1.29390 1.23510 1.82894 1.18987 0.97358 0.84496 0.98923 1.20429 0.95826 0.96784 1.00436 1.20874 1.00441 0.92379 1.00348 1.20902 0.94970 0.99929 0.97814 1.20464 0.97259 0.93801 1.01944 1.19011 0.89915 0.94576 0.95190 1.86328 1.37913 1.25227 1.71695 1.23806 0.76266 0.88131 0.85880 1.90693 1.42705 1.17924 1.86544 1.21052 0.99442 0.94469 0.84731 1.43935 1.08948 1.45560 1.30831 1.20850 0.85714 0.93289 0.98257 1.19148 0.90993 1.00505 1.28195 0.91299 1.25004 0.98041 0.94678 1.01353 1.70125 1.40481 1.00955 1.42352 0.86284 0.82876 0.76800 0.80612 1.21335 1.21712 1.20589 0.91911 0.92877 0.92167 0.90489 0.90341 0.87933 0.90320 0.85827 0.90543 0.85048 0.85296 0.85245 0.84860 0.90990 0.91492 0.94739 0.93427 0.98493 0.93796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.73 10.24 37.16 0.38 -1.35 16 2 C 0.11 1.35 5.68 -4.04 -0.02 1.32 16 3 N -0.62 -9.64 2.40 -173.69 -0.42 -10.06 16 4 C 0.13 1.72 5.15 -4.04 -0.02 1.70 16 5 C 0.04 0.51 3.29 -26.49 -0.09 0.42 16 6 H 0.09 1.63 8.14 -51.93 -0.42 1.20 16 7 C 0.03 0.35 6.56 37.40 0.25 0.60 16 8 O -0.31 -4.29 10.42 -32.86 -0.34 -4.63 16 9 C 0.05 0.65 6.49 -39.14 -0.25 0.40 16 10 C -0.12 -1.34 9.96 -39.43 -0.39 -1.73 16 11 C -0.12 -1.19 10.04 -39.59 -0.40 -1.59 16 12 C -0.12 -1.16 10.04 -39.59 -0.40 -1.56 16 13 C -0.12 -1.36 9.96 -39.42 -0.39 -1.75 16 14 C 0.06 0.81 6.49 -39.14 -0.25 0.55 16 15 O -0.30 -4.22 8.74 -32.87 -0.29 -4.50 16 16 C 0.47 9.79 7.74 -10.98 -0.09 9.71 16 17 O -0.51 -13.12 16.01 5.56 0.09 -13.03 16 18 C 0.14 2.79 4.74 -5.19 -0.02 2.77 16 19 N -0.57 -14.94 2.42 -182.51 -0.44 -15.38 16 20 C 0.16 4.19 9.02 59.85 0.54 4.73 16 21 C -0.26 -7.40 9.68 -15.06 -0.15 -7.55 16 22 H 0.07 1.92 7.86 -52.49 -0.41 1.51 16 23 C 0.01 0.25 5.06 -17.43 -0.09 0.16 16 24 N -0.90 -27.35 10.66 55.49 0.59 -26.76 16 25 Si 0.90 22.67 29.58 -169.99 -5.03 17.65 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 28 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.69 7.22 -51.93 -0.37 0.31 16 32 H 0.08 0.85 7.08 -51.93 -0.37 0.49 16 33 H 0.08 0.94 6.44 -51.93 -0.33 0.61 16 34 H 0.10 1.47 7.42 -51.93 -0.39 1.08 16 35 H 0.08 0.82 8.07 -51.93 -0.42 0.40 16 36 H 0.12 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 39 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 41 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 42 H 0.07 1.39 7.29 -51.93 -0.38 1.01 16 43 H 0.07 1.18 6.90 -51.93 -0.36 0.82 16 44 H 0.03 0.99 7.40 -51.93 -0.38 0.60 16 45 H 0.05 1.28 7.21 -51.93 -0.37 0.91 16 46 H 0.00 -0.08 7.83 -51.93 -0.41 -0.48 16 47 H 0.25 7.43 8.31 -40.82 -0.34 7.10 16 LS Contribution 383.69 15.07 5.78 5.78 Total: -1.00 -35.96 383.69 -8.59 -44.55 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -7.14 Total: -0.44 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: -1.40 Total: 6.83 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: -0.27 Total: -52.20 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -0.54 Total: -22.17 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.03 Total: 17.65 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.96 -8.59 -44.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972732.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.440 kcal (2) G-P(sol) polarization free energy of solvation -35.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds