Wall clock time and date at job start Tue Mar 31 2020 18:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46503 * 109.46925 * 2 1 4 4 C 1.36939 * 119.99935 * 87.73722 * 3 2 1 5 5 H 1.08004 * 119.99561 * 163.43326 * 4 3 2 6 6 C 1.38808 * 120.00353 * 343.43499 * 4 3 2 7 7 N 1.31618 * 119.99819 * 2.11737 * 6 4 3 8 8 Si 1.86799 * 120.00190 * 182.12106 * 6 4 3 9 9 H 1.48497 * 109.47064 * 60.00009 * 8 6 4 10 10 H 1.48499 * 109.47123 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46848 * 299.99558 * 8 6 4 12 12 C 1.46498 * 120.00003 * 267.73648 * 3 2 1 13 13 H 1.08995 * 109.47249 * 174.00175 * 12 3 2 14 14 C 1.53001 * 109.47234 * 53.99618 * 12 3 2 15 15 C 1.50705 * 109.47204 * 293.99860 * 12 3 2 16 16 O 1.21289 * 119.99700 * 7.17581 * 15 12 3 17 17 N 1.34774 * 120.00100 * 187.18154 * 15 12 3 18 18 C 1.39959 * 119.99809 * 183.85656 * 17 15 12 19 19 C 1.38620 * 119.99907 * 330.85936 * 18 17 15 20 20 C 1.39508 * 119.77673 * 179.73356 * 19 18 17 21 21 C 1.47742 * 120.11974 * 180.26837 * 20 19 18 22 22 O 1.21470 * 119.99939 * 0.29523 * 21 20 19 23 23 O 1.34707 * 120.00105 * 180.29030 * 21 20 19 24 24 C 1.45198 * 117.00029 * 180.02562 * 23 21 20 25 25 C 1.39670 * 119.76327 * 0.56058 * 20 19 18 26 26 C 1.37960 * 119.99273 * 359.71446 * 25 20 19 27 27 C 1.38273 * 120.22809 * 359.97438 * 26 25 20 28 28 C 1.50695 * 119.88175 * 180.02562 * 27 26 25 29 29 H 1.09006 * 109.47366 * 306.78035 * 1 2 3 30 30 H 1.08994 * 109.47276 * 66.77857 * 1 2 3 31 31 H 1.09005 * 109.47119 * 186.78051 * 1 2 3 32 32 H 1.08995 * 109.47260 * 239.99771 * 2 1 3 33 33 H 1.09005 * 109.47288 * 119.99310 * 2 1 3 34 34 H 0.96998 * 120.00352 * 179.97438 * 7 6 4 35 35 H 1.08996 * 109.47108 * 180.02562 * 14 12 3 36 36 H 1.09007 * 109.46830 * 300.00234 * 14 12 3 37 37 H 1.08999 * 109.46713 * 60.00020 * 14 12 3 38 38 H 0.96998 * 120.00117 * 3.85299 * 17 15 12 39 39 H 1.08013 * 120.11271 * 359.97438 * 19 18 17 40 40 H 1.09004 * 109.46967 * 60.00703 * 24 23 21 41 41 H 1.09001 * 109.47420 * 180.02562 * 24 23 21 42 42 H 1.09000 * 109.47753 * 300.00634 * 24 23 21 43 43 H 1.08002 * 120.00190 * 179.67944 * 25 20 19 44 44 H 1.08000 * 119.88875 * 179.97438 * 26 25 20 45 45 H 1.09001 * 109.46880 * 270.02210 * 28 27 26 46 46 H 1.08996 * 109.47246 * 30.02354 * 28 27 26 47 47 H 1.09005 * 109.47201 * 150.02478 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2023 2.0424 1.1850 5 1 2.8016 2.9404 1.2149 6 6 1.6187 1.5585 2.3478 7 7 0.9230 0.4415 2.3193 8 14 1.8205 2.4925 3.9528 9 1 1.2517 3.8564 3.8068 10 1 1.1065 1.7725 5.0377 11 1 3.2634 2.5912 4.2899 12 6 2.3096 2.0552 -1.2677 13 1 2.5567 3.0993 -1.0758 14 6 1.0827 1.9805 -2.1788 15 6 3.4764 1.3783 -1.9399 16 8 3.9286 0.3511 -1.4801 17 7 4.0173 1.9145 -3.0518 18 6 5.0474 1.2447 -3.7218 19 6 5.9122 0.4217 -3.0173 20 6 6.9340 -0.2481 -3.6907 21 6 7.8564 -1.1317 -2.9483 22 8 7.7225 -1.2802 -1.7501 23 8 8.8457 -1.7728 -3.6000 24 6 9.7135 -2.6249 -2.8069 25 6 7.0857 -0.0757 -5.0684 26 6 6.2231 0.7501 -5.7592 27 6 5.2065 1.4089 -5.0924 28 6 4.2683 2.3086 -5.8548 29 1 -0.3634 0.6153 0.8231 30 1 -0.3633 0.4052 -0.9443 31 1 -0.3633 -1.0205 0.1213 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 0.5155 0.1031 3.1319 35 1 1.2997 2.4815 -3.1222 36 1 0.8357 0.9362 -2.3707 37 1 0.2389 2.4700 -1.6926 38 1 3.6927 2.7646 -3.3877 39 1 5.7930 0.2964 -1.9511 40 1 9.1203 -3.4070 -2.3329 41 1 10.4652 -3.0794 -3.4523 42 1 10.2068 -2.0279 -2.0398 43 1 7.8786 -0.5883 -5.5928 44 1 6.3421 0.8826 -6.8244 45 1 4.6692 3.3221 -5.8702 46 1 4.1646 1.9433 -6.8765 47 1 3.2924 2.3112 -5.3691 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411211607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:46 Heat of formation + Delta-G solvation = -50.725774 kcal Electronic energy + Delta-G solvation = -29519.118664 eV Core-core repulsion = 25475.891207 eV Total energy + Delta-G solvation = -4043.227458 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.78543 -40.03514 -38.44615 -36.42682 -35.99733 -34.59149 -32.76416 -32.31920 -30.16491 -29.31474 -28.63515 -28.49198 -26.87566 -24.41329 -23.59206 -22.94761 -22.14869 -21.01048 -20.56492 -19.33325 -18.27089 -17.19819 -16.93216 -16.39454 -16.34322 -16.03355 -15.30477 -15.10398 -15.00665 -14.56485 -13.92527 -13.89160 -13.62721 -13.57899 -13.36980 -13.34927 -13.05110 -12.66292 -12.21216 -12.18932 -12.04957 -11.89291 -11.81507 -11.75175 -11.43664 -11.24897 -10.96131 -10.86646 -10.73252 -10.66660 -10.52825 -10.41824 -10.23373 -9.92148 -9.65270 -9.41301 -9.04631 -8.81717 -8.26956 -7.98632 -6.78739 -5.62154 -3.15190 0.65703 1.35082 2.49661 2.60122 3.17967 3.32127 3.42186 3.45952 3.46634 3.80162 4.47660 4.59875 4.67179 4.86054 4.98124 5.03369 5.07483 5.16099 5.24335 5.33058 5.37531 5.39630 5.43748 5.48432 5.60393 5.79987 5.81815 5.89697 5.93251 6.10681 6.15711 6.29103 6.32035 6.40592 6.45816 6.52162 6.72770 6.83907 7.04201 7.14556 7.24138 7.40170 7.64873 7.70832 7.76654 8.01749 8.31305 8.48123 8.68170 9.29131 9.85064 10.29161 11.30808 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011992 B = 0.003467 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.255527 B = 8073.446090 C = 9551.162754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.178 3.822 3 N -0.569 5.569 4 C -0.252 4.252 5 H 0.070 0.930 6 C 0.000 4.000 7 N -0.899 5.899 8 Si 0.912 3.088 9 H -0.285 1.285 10 H -0.290 1.290 11 H -0.285 1.285 12 C 0.162 3.838 13 H 0.089 0.911 14 C -0.153 4.153 15 C 0.483 3.517 16 O -0.496 6.496 17 N -0.681 5.681 18 C 0.150 3.850 19 C -0.065 4.065 20 C -0.114 4.114 21 C 0.506 3.494 22 O -0.493 6.493 23 O -0.358 6.358 24 C 0.036 3.964 25 C -0.088 4.088 26 C -0.116 4.116 27 C -0.091 4.091 28 C -0.118 4.118 29 H 0.091 0.909 30 H 0.003 0.997 31 H 0.016 0.984 32 H 0.007 0.993 33 H 0.089 0.911 34 H 0.251 0.749 35 H 0.043 0.957 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.407 0.593 39 H 0.166 0.834 40 H 0.064 0.936 41 H 0.101 0.899 42 H 0.063 0.937 43 H 0.134 0.866 44 H 0.131 0.869 45 H 0.074 0.926 46 H 0.072 0.928 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.204 1.848 -19.029 21.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.054 3.946 3 N -0.287 5.287 4 C -0.381 4.381 5 H 0.088 0.912 6 C -0.197 4.197 7 N -0.545 5.545 8 Si 0.742 3.258 9 H -0.211 1.211 10 H -0.216 1.216 11 H -0.211 1.211 12 C 0.048 3.952 13 H 0.107 0.893 14 C -0.212 4.212 15 C 0.269 3.731 16 O -0.367 6.367 17 N -0.327 5.327 18 C 0.054 3.946 19 C -0.085 4.085 20 C -0.116 4.116 21 C 0.350 3.650 22 O -0.381 6.381 23 O -0.275 6.275 24 C -0.057 4.057 25 C -0.107 4.107 26 C -0.135 4.135 27 C -0.094 4.094 28 C -0.175 4.175 29 H 0.109 0.891 30 H 0.022 0.978 31 H 0.036 0.964 32 H 0.025 0.975 33 H 0.107 0.893 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.243 0.757 39 H 0.183 0.817 40 H 0.082 0.918 41 H 0.119 0.881 42 H 0.081 0.919 43 H 0.152 0.848 44 H 0.149 0.851 45 H 0.093 0.907 46 H 0.091 0.909 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.315 0.924 -17.996 20.763 hybrid contribution 0.132 0.613 0.780 1.001 sum 10.447 1.537 -17.216 20.197 Atomic orbital electron populations 1.22610 0.99171 0.99116 0.99222 1.20737 0.91881 0.83422 0.98548 1.43959 1.74392 1.11408 0.98952 1.19266 1.25750 1.07432 0.85665 0.91173 1.24906 0.98626 0.97865 0.98298 1.70274 1.37261 1.20717 1.26226 0.86226 0.77582 0.78961 0.83072 1.21123 1.21578 1.21147 1.20216 0.90335 0.96331 0.88367 0.89320 1.22306 0.98969 1.02315 0.97630 1.23649 0.85330 0.85669 0.78427 1.90634 1.60836 1.23598 1.61632 1.44215 1.35499 1.24536 1.28500 1.17594 0.89908 0.96779 0.90361 1.21729 0.90080 0.93897 1.02827 1.18911 0.97529 1.01316 0.93852 1.21243 0.79368 0.78392 0.85977 1.90901 1.70703 1.60942 1.15531 1.86516 1.41206 1.57381 1.42437 1.23260 0.92777 0.93381 0.96312 1.21292 0.99119 0.97646 0.92683 1.20748 0.95123 0.97729 0.99864 1.19945 0.97982 0.99758 0.91685 1.20802 0.98169 0.98458 1.00057 0.89056 0.97804 0.96450 0.97488 0.89315 0.93828 0.93806 0.92270 0.91171 0.75663 0.81717 0.91768 0.88107 0.91852 0.84767 0.85108 0.90730 0.90886 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 9.02 37.15 0.34 -3.09 16 2 C 0.18 4.59 4.38 -4.04 -0.02 4.58 16 3 N -0.57 -14.12 2.21 -166.98 -0.37 -14.49 16 4 C -0.25 -6.80 9.70 -15.06 -0.15 -6.95 16 5 H 0.07 1.82 7.76 -52.48 -0.41 1.42 16 6 C 0.00 0.00 5.32 -17.43 -0.09 -0.10 16 7 N -0.90 -25.30 7.27 55.49 0.40 -24.89 16 8 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 12 C 0.16 3.15 3.11 -69.08 -0.21 2.94 16 13 H 0.09 1.58 7.85 -51.93 -0.41 1.18 16 14 C -0.15 -2.50 7.98 37.16 0.30 -2.20 16 15 C 0.48 9.24 6.80 -10.98 -0.07 9.17 16 16 O -0.50 -11.71 11.85 5.55 0.07 -11.64 16 17 N -0.68 -9.79 4.87 -9.89 -0.05 -9.84 16 18 C 0.15 2.19 6.37 -83.74 -0.53 1.65 16 19 C -0.06 -1.12 8.29 -38.97 -0.32 -1.44 16 20 C -0.11 -1.72 5.87 -105.01 -0.62 -2.34 16 21 C 0.51 8.04 7.90 34.61 0.27 8.31 16 22 O -0.49 -9.61 16.13 -19.24 -0.31 -9.92 16 23 O -0.36 -4.53 9.81 -40.51 -0.40 -4.93 16 24 C 0.04 0.35 10.56 101.05 1.07 1.42 16 25 C -0.09 -1.01 9.61 -39.15 -0.38 -1.39 16 26 C -0.12 -1.17 9.67 -39.67 -0.38 -1.55 16 27 C -0.09 -1.01 5.90 -104.35 -0.62 -1.63 16 28 C -0.12 -0.91 9.44 36.00 0.34 -0.57 16 29 H 0.09 2.44 5.95 -51.93 -0.31 2.13 16 30 H 0.00 0.07 5.87 -51.93 -0.30 -0.24 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.01 0.18 6.55 -51.93 -0.34 -0.16 16 33 H 0.09 2.62 6.14 -51.93 -0.32 2.30 16 34 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 35 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 1.06 6.38 -51.92 -0.33 0.73 16 37 H 0.07 1.19 8.05 -51.93 -0.42 0.78 16 38 H 0.41 4.35 7.56 -40.82 -0.31 4.04 16 39 H 0.17 3.49 5.38 -52.48 -0.28 3.21 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.13 1.24 7.61 -52.49 -0.40 0.85 16 44 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 45 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 47 H 0.07 0.55 7.05 -51.93 -0.37 0.18 16 LS Contribution 378.41 15.07 5.70 5.70 Total: -1.00 -33.79 378.41 -7.77 -41.55 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -6.71 Total: 4.89 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: -1.08 Total: 6.81 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: -0.01 Total: -49.22 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.64 Total: -26.49 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.79 -7.77 -41.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411211607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.173 kcal (2) G-P(sol) polarization free energy of solvation -33.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds