Wall clock time and date at job start Tue Mar 31 2020 19:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46496 * 119.99901 * 2 1 4 4 C 1.52997 * 109.46922 * 270.27202 * 3 2 1 5 5 H 1.08999 * 110.75455 * 57.02286 * 4 3 2 6 6 C 1.55314 * 110.85052 * 180.71686 * 4 3 2 7 7 C 1.54940 * 100.94382 * 152.32699 * 6 4 3 8 8 O 1.43650 * 105.13700 * 323.55154 * 7 6 4 9 9 C 1.43243 * 109.96750 * 24.43115 * 8 7 6 10 10 C 1.34775 * 120.00170 * 180.26919 * 2 1 3 11 11 O 1.21581 * 120.00291 * 179.72246 * 10 2 1 12 12 N 1.34777 * 119.99672 * 359.73003 * 10 2 1 13 13 C 1.46506 * 120.00086 * 179.97438 * 12 10 2 14 14 C 1.50693 * 109.47167 * 179.97438 * 13 12 10 15 15 C 1.38295 * 119.93257 * 269.72258 * 14 13 12 16 16 C 1.38108 * 120.07172 * 179.72716 * 15 14 13 17 17 C 1.38876 * 119.92312 * 0.54844 * 16 15 14 18 18 O 1.35761 * 120.06606 * 179.74888 * 17 16 15 19 19 C 1.34832 * 116.99898 * 174.44516 * 18 17 16 20 20 H 1.07996 * 120.00267 * 5.05502 * 19 18 17 21 21 C 1.38655 * 119.99449 * 185.05880 * 19 18 17 22 22 N 1.31553 * 120.00338 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99697 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47170 * 89.99511 * 23 21 19 25 25 H 1.48498 * 109.47134 * 209.99832 * 23 21 19 26 26 H 1.48508 * 109.46963 * 329.99691 * 23 21 19 27 27 C 1.38883 * 119.86761 * 359.72724 * 17 16 15 28 28 C 1.38089 * 119.92678 * 0.02562 * 27 17 16 29 29 H 1.09005 * 109.47157 * 269.73137 * 1 2 3 30 30 H 1.08996 * 109.47017 * 29.72538 * 1 2 3 31 31 H 1.09003 * 109.47384 * 149.72837 * 1 2 3 32 32 H 1.08994 * 109.47540 * 30.27224 * 3 2 1 33 33 H 1.09001 * 109.47216 * 150.27476 * 3 2 1 34 34 H 1.09003 * 111.12039 * 270.24907 * 6 4 3 35 35 H 1.08997 * 111.12449 * 34.40105 * 6 4 3 36 36 H 1.09003 * 110.30606 * 204.64276 * 7 6 4 37 37 H 1.08992 * 110.39586 * 82.51600 * 7 6 4 38 38 H 1.08995 * 109.83101 * 238.77156 * 9 8 7 39 39 H 1.09003 * 109.82654 * 117.79669 * 9 8 7 40 40 H 0.97003 * 120.00072 * 359.97438 * 12 10 2 41 41 H 1.09006 * 109.46447 * 299.99905 * 13 12 10 42 42 H 1.09004 * 109.46874 * 59.99389 * 13 12 10 43 43 H 1.07998 * 119.96708 * 0.02562 * 15 14 13 44 44 H 1.07993 * 120.03541 * 180.27574 * 16 15 14 45 45 H 0.96995 * 120.00074 * 180.02562 * 22 21 19 46 46 H 1.08003 * 120.03496 * 180.02562 * 27 17 16 47 47 H 1.08004 * 119.96733 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4465 1.7138 -1.4425 5 1 1.5066 1.8011 -1.9875 6 6 3.2383 3.0494 -1.4800 7 6 3.9689 2.9200 -2.8402 8 8 4.3034 1.5277 -2.9554 9 6 3.4088 0.7422 -2.1589 10 6 2.1389 -1.1672 -0.0055 11 8 3.3547 -1.1672 -0.0106 12 7 1.4650 -2.3343 -0.0055 13 6 2.1974 -3.6031 -0.0120 14 6 1.2182 -4.7485 -0.0099 15 6 0.7800 -5.2796 1.1894 16 6 -0.1218 -6.3256 1.1948 17 6 -0.5798 -6.8516 -0.0062 18 8 -1.4623 -7.8832 -0.0044 19 6 -1.9542 -8.2700 -1.1987 20 1 -1.5824 -7.8199 -2.1072 21 6 -2.9375 -9.2456 -1.2602 22 7 -3.3901 -9.7942 -0.1535 23 14 -3.6186 -9.7821 -2.9149 24 1 -2.8120 -10.9134 -3.4389 25 1 -5.0302 -10.2137 -2.7527 26 1 -3.5549 -8.6453 -3.8684 27 6 -0.1335 -6.3198 -1.2091 28 6 0.7643 -5.2706 -1.2075 29 1 -0.3634 -0.0048 1.0277 30 1 -0.3633 0.8924 -0.5095 31 1 -0.3634 -0.8875 -0.5181 32 1 1.6106 2.0271 0.5180 33 1 3.1520 1.1372 0.5096 34 1 2.5641 3.9059 -1.4760 35 1 3.9494 3.1077 -0.6560 36 1 4.8737 3.5279 -2.8429 37 1 3.3102 3.2195 -3.6552 38 1 3.9740 0.1712 -1.4223 39 1 2.8423 0.0650 -2.7982 40 1 0.4950 -2.3343 -0.0011 41 1 2.8201 -3.6585 -0.9050 42 1 2.8282 -3.6631 0.8750 43 1 1.1396 -4.8728 2.1230 44 1 -0.4670 -6.7369 2.1317 45 1 -4.0777 -10.4769 -0.1966 46 1 -0.4882 -6.7265 -2.1446 47 1 1.1115 -4.8563 -2.1426 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176109607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:03 Heat of formation + Delta-G solvation = -70.766466 kcal Electronic energy + Delta-G solvation = -28109.822569 eV Core-core repulsion = 24065.726082 eV Total energy + Delta-G solvation = -4044.096487 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.58368 -39.38662 -39.03135 -36.98556 -35.87413 -34.56662 -32.86908 -32.34189 -30.32096 -30.14674 -29.44647 -27.27976 -26.38060 -25.49635 -24.30236 -22.59769 -22.07006 -21.14621 -20.65972 -19.85102 -18.45762 -18.07966 -17.05736 -16.86762 -16.55208 -16.47635 -15.38886 -14.99568 -14.85351 -14.70930 -14.53470 -14.44937 -13.94292 -13.81489 -13.69925 -13.56001 -13.37305 -13.21829 -12.87699 -12.79825 -12.72169 -12.37758 -12.07489 -11.89923 -11.71535 -11.61888 -11.40947 -11.22660 -11.05325 -10.95181 -10.80347 -10.69866 -10.50731 -10.20476 -9.62828 -9.44387 -9.05973 -8.93134 -8.68440 -8.30356 -7.35149 -6.54785 -4.13706 1.99590 2.11244 2.65098 3.07268 3.08071 3.12857 3.13092 3.69456 3.88321 3.90700 4.19202 4.39639 4.50832 4.59124 4.77830 4.88653 4.93422 5.00126 5.01010 5.13168 5.16158 5.16895 5.22686 5.38788 5.41264 5.43104 5.44602 5.46589 5.63192 5.65571 5.78762 5.80640 5.89848 6.06482 6.10382 6.24096 6.33716 6.55941 6.60051 6.76839 6.79602 6.85098 6.95368 7.13446 7.26092 7.33416 7.69555 7.89785 7.90423 8.55217 8.90556 9.58603 10.62669 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020249 B = 0.002019 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.469326 B =13864.785977 C =14356.713742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.638 5.638 3 C 0.145 3.855 4 C -0.140 4.140 5 H 0.082 0.918 6 C -0.149 4.149 7 C 0.051 3.949 8 O -0.388 6.388 9 C 0.047 3.953 10 C 0.702 3.298 11 O -0.589 6.589 12 N -0.736 5.736 13 C 0.196 3.804 14 C -0.215 4.215 15 C -0.053 4.053 16 C -0.196 4.196 17 C 0.161 3.839 18 O -0.173 6.173 19 C -0.393 4.393 20 H 0.093 0.907 21 C 0.040 3.960 22 N -0.859 5.859 23 Si 0.942 3.058 24 H -0.272 1.272 25 H -0.277 1.277 26 H -0.267 1.267 27 C -0.237 4.237 28 C -0.050 4.050 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.057 0.943 38 H 0.103 0.897 39 H 0.057 0.943 40 H 0.397 0.603 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.112 0.888 44 H 0.118 0.882 45 H 0.271 0.729 46 H 0.128 0.872 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.130 23.628 -1.031 24.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.376 5.376 3 C 0.021 3.979 4 C -0.160 4.160 5 H 0.101 0.899 6 C -0.187 4.187 7 C -0.026 4.026 8 O -0.307 6.307 9 C -0.029 4.029 10 C 0.403 3.597 11 O -0.468 6.468 12 N -0.392 5.392 13 C 0.074 3.926 14 C -0.216 4.216 15 C -0.072 4.072 16 C -0.215 4.215 17 C 0.106 3.894 18 O -0.076 6.076 19 C -0.469 4.469 20 H 0.111 0.889 21 C -0.165 4.165 22 N -0.493 5.493 23 Si 0.766 3.234 24 H -0.198 1.198 25 H -0.202 1.202 26 H -0.191 1.191 27 C -0.256 4.256 28 C -0.069 4.069 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.075 0.925 38 H 0.121 0.879 39 H 0.075 0.925 40 H 0.233 0.767 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.130 0.870 44 H 0.136 0.864 45 H 0.081 0.919 46 H 0.146 0.854 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 7.898 23.164 -0.894 24.490 hybrid contribution -1.282 -0.214 -0.838 1.547 sum 6.616 22.950 -1.733 23.947 Atomic orbital electron populations 1.21742 0.79712 1.03145 1.01952 1.47038 1.06389 1.04999 1.79132 1.21256 0.98049 0.83794 0.94769 1.23205 0.99578 0.95227 0.97996 0.89940 1.23258 0.99540 0.97190 0.98711 1.23315 0.99474 0.83808 0.95970 1.88419 1.55732 1.16808 1.69752 1.23549 0.91595 0.93316 0.94409 1.15964 0.85386 0.80435 0.77886 1.90848 1.11491 1.86147 1.58335 1.45680 1.10156 1.04541 1.78836 1.19850 0.92116 0.78914 1.01763 1.19220 1.06518 1.02201 0.93668 1.20537 0.95226 0.94876 0.96594 1.20218 1.03987 1.00993 0.96308 1.19445 0.89503 0.87168 0.93308 1.83982 1.49958 1.40416 1.33223 1.21353 1.20446 1.22022 0.83120 0.88921 1.25320 0.95814 0.95968 0.99383 1.70032 1.27196 1.25067 1.27030 0.85695 0.78417 0.79277 0.79963 1.19777 1.20185 1.19145 1.21160 1.04256 1.01747 0.98480 1.20649 0.94978 0.94789 0.96474 0.92422 0.90949 0.91172 0.90243 0.89294 0.89894 0.89965 0.89911 0.92517 0.87920 0.92483 0.76669 0.91708 0.91670 0.86963 0.86384 0.91870 0.85428 0.87406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.53 10.20 59.85 0.61 1.14 16 2 N -0.64 -6.13 2.82 -187.36 -0.53 -6.66 16 3 C 0.14 1.18 4.98 -4.05 -0.02 1.16 16 4 C -0.14 -1.16 3.25 -88.67 -0.29 -1.44 16 5 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 6 C -0.15 -0.98 6.62 -24.48 -0.16 -1.14 16 7 C 0.05 0.42 7.78 38.18 0.30 0.72 16 8 O -0.39 -4.89 11.36 -35.23 -0.40 -5.29 16 9 C 0.05 0.56 6.57 37.88 0.25 0.81 16 10 C 0.70 9.11 7.70 -86.92 -0.67 8.44 16 11 O -0.59 -9.50 13.35 5.29 0.07 -9.43 16 12 N -0.74 -9.17 5.41 -66.41 -0.36 -9.53 16 13 C 0.20 2.74 5.80 -5.19 -0.03 2.71 16 14 C -0.21 -3.38 5.25 -104.58 -0.55 -3.93 16 15 C -0.05 -0.88 9.69 -39.61 -0.38 -1.27 16 16 C -0.20 -3.88 9.99 -39.39 -0.39 -4.28 16 17 C 0.16 3.68 6.65 -39.11 -0.26 3.42 16 18 O -0.17 -4.76 9.76 0.01 0.00 -4.76 16 19 C -0.39 -10.60 9.49 30.89 0.29 -10.31 16 20 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 21 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 22 N -0.86 -24.49 13.67 55.48 0.76 -23.73 16 23 Si 0.94 19.89 29.55 -169.99 -5.02 14.86 16 24 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 25 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 26 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 27 C -0.24 -4.85 9.17 -39.40 -0.36 -5.21 16 28 C -0.05 -0.85 9.69 -39.61 -0.38 -1.24 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.36 8.07 -51.93 -0.42 -0.06 16 31 H 0.07 0.49 6.37 -51.93 -0.33 0.16 16 32 H 0.08 0.45 8.07 -51.93 -0.42 0.03 16 33 H 0.09 0.87 7.35 -51.93 -0.38 0.49 16 34 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.52 8.04 -51.93 -0.42 0.11 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.10 1.47 5.19 -51.93 -0.27 1.20 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.40 4.43 6.20 -40.82 -0.25 4.18 16 41 H 0.06 0.93 8.09 -51.93 -0.42 0.51 16 42 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 43 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 44 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 45 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 46 H 0.13 2.64 5.64 -52.48 -0.30 2.34 16 47 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 LS Contribution 383.21 15.07 5.77 5.77 Total: -1.00 -32.10 383.21 -8.70 -40.79 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -6.84 Total: 7.40 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -2.15 Total: -9.45 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: -0.13 Total: -39.91 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.33 Total: -19.47 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.10 -8.70 -40.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176109607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.972 kcal (2) G-P(sol) polarization free energy of solvation -32.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds