Wall clock time and date at job start Tue Mar 31 2020 18:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42899 * 109.47554 * 2 1 4 4 C 1.42900 * 114.00146 * 180.02562 * 3 2 1 5 5 H 1.08993 * 112.84949 * 21.69325 * 4 3 2 6 6 C 1.53780 * 113.61173 * 250.49801 * 4 3 2 7 7 C 1.53789 * 87.07869 * 220.01876 * 6 4 3 8 8 H 1.08993 * 113.61356 * 270.79772 * 7 6 4 9 9 N 1.46505 * 113.61105 * 139.98351 * 7 6 4 10 10 C 1.34771 * 120.00007 * 105.86544 * 9 7 6 11 11 O 1.21592 * 120.00022 * 359.97438 * 10 9 7 12 12 N 1.34773 * 120.00076 * 179.97438 * 10 9 7 13 13 C 1.46502 * 120.00125 * 179.72441 * 12 10 9 14 14 C 1.50701 * 109.47291 * 180.02562 * 13 12 10 15 15 H 1.08002 * 120.00147 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00176 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99746 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00034 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47020 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46701 * 119.99777 * 18 16 14 21 21 H 1.48492 * 109.47267 * 239.99956 * 18 16 14 22 22 C 1.53779 * 87.17172 * 25.39300 * 7 6 4 23 23 H 1.08998 * 113.61513 * 220.05656 * 22 7 6 24 24 O 1.42904 * 113.61548 * 89.15657 * 22 7 6 25 25 C 1.35899 * 116.99831 * 156.61457 * 24 22 7 26 26 C 1.38728 * 120.05745 * 5.43172 * 25 24 22 27 27 C 1.38142 * 119.94596 * 179.74310 * 26 25 24 28 28 C 1.38267 * 120.05258 * 0.50703 * 27 26 25 29 29 C 1.38266 * 120.11373 * 359.76660 * 28 27 26 30 30 C 1.38141 * 120.05472 * 359.97438 * 29 28 27 31 31 H 1.08994 * 109.47343 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46876 * 299.99733 * 1 2 3 33 33 H 1.09000 * 109.47371 * 59.99520 * 1 2 3 34 34 H 1.09006 * 109.46876 * 240.00267 * 2 1 3 35 35 H 1.09000 * 109.47371 * 120.00480 * 2 1 3 36 36 H 1.08999 * 113.61678 * 105.47894 * 6 4 3 37 37 H 1.09000 * 113.61713 * 334.56589 * 6 4 3 38 38 H 0.96997 * 119.99686 * 285.86381 * 9 7 6 39 39 H 0.97002 * 120.00112 * 0.02562 * 12 10 9 40 40 H 1.09000 * 109.47349 * 300.00098 * 13 12 10 41 41 H 1.08995 * 109.47521 * 60.00369 * 13 12 10 42 42 H 0.97001 * 119.99497 * 180.02562 * 17 16 14 43 43 H 1.08006 * 120.03108 * 359.97438 * 26 25 24 44 44 H 1.08003 * 119.97730 * 180.23138 * 27 26 25 45 45 H 1.08006 * 119.94536 * 179.74314 * 28 27 26 46 46 H 1.07997 * 119.97027 * 179.97438 * 29 28 27 47 47 H 1.08002 * 120.02975 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.9263 0.5631 -0.3722 6 6 4.0084 1.9773 1.3275 7 6 4.9920 2.8074 0.4857 8 1 5.9157 2.2802 0.2475 9 7 5.2254 4.1538 1.0140 10 6 6.3880 4.4434 1.6309 11 8 7.2432 3.5871 1.7494 12 7 6.6030 5.6821 2.1165 13 6 7.8644 5.9953 2.7925 14 6 7.8520 7.4351 3.2374 15 1 6.9908 8.0550 3.0364 16 6 8.9405 7.9613 3.9002 17 7 9.9894 7.2065 4.1445 18 14 8.9253 9.7461 4.4511 19 1 7.6382 10.3743 4.0588 20 1 9.0772 9.8099 5.9269 21 1 10.0482 10.4728 3.8060 22 6 3.9476 2.7607 -0.6421 23 1 4.3803 2.6183 -1.6323 24 8 3.0064 3.8350 -0.5957 25 6 2.3850 4.1616 -1.7593 26 6 2.5892 3.3925 -2.8957 27 6 1.9523 3.7234 -4.0760 28 6 1.1199 4.8263 -4.1280 29 6 0.9191 5.5977 -2.9982 30 6 1.5496 5.2679 -1.8142 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 4.4903 1.2035 1.9250 37 1 3.3072 2.5823 1.9023 38 1 4.5430 4.8367 0.9197 39 1 5.9206 6.3652 2.0223 40 1 7.9815 5.3479 3.6615 41 1 8.6948 5.8343 2.1050 42 1 10.7550 7.5766 4.6111 43 1 3.2428 2.5335 -2.8567 44 1 2.1080 3.1228 -4.9600 45 1 0.6260 5.0858 -5.0528 46 1 0.2689 6.4589 -3.0416 47 1 1.3928 5.8710 -0.9321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426426421.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:54 Heat of formation + Delta-G solvation = -60.284448 kcal Electronic energy + Delta-G solvation = -28562.931708 eV Core-core repulsion = 24519.289755 eV Total energy + Delta-G solvation = -4043.641953 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.99708 -39.40868 -38.65936 -37.33609 -35.97354 -34.07169 -32.90371 -32.07585 -31.19965 -30.98315 -29.88618 -27.15953 -25.89564 -24.36554 -23.09058 -22.76053 -22.56339 -22.29081 -20.17749 -19.95926 -18.46267 -18.04482 -17.32852 -16.50260 -16.07938 -16.02301 -15.86535 -15.59233 -15.26435 -14.80934 -14.66380 -14.53958 -14.29010 -13.79249 -13.58961 -13.57617 -13.23233 -13.11347 -12.99662 -12.79474 -12.28638 -12.11596 -11.94115 -11.80000 -11.77832 -11.60015 -11.36299 -11.13450 -10.92710 -10.91092 -10.79655 -10.76422 -10.27641 -9.66768 -9.40384 -9.32099 -9.17916 -8.75450 -8.65677 -8.32335 -7.73612 -6.12892 -4.18941 1.16470 1.28855 2.72358 3.26246 3.27757 3.33605 3.37030 3.58988 3.65702 3.88391 4.15589 4.29512 4.35919 4.57510 4.63985 4.69117 4.71474 4.79342 4.83027 4.95593 5.00682 5.07123 5.13150 5.19570 5.23347 5.23660 5.38136 5.40371 5.49372 5.60576 5.68025 5.80342 5.81544 5.84871 6.05856 6.14661 6.22770 6.34824 6.57035 6.84431 6.97786 7.16651 7.30411 7.54517 7.59394 7.60088 7.94448 8.08045 8.79934 8.97306 9.35495 9.50764 10.97467 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012516 B = 0.002585 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.552893 B =10829.833081 C =12314.515178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.358 6.358 4 C 0.048 3.952 5 H 0.099 0.901 6 C -0.165 4.165 7 C 0.161 3.839 8 H 0.129 0.871 9 N -0.738 5.738 10 C 0.694 3.306 11 O -0.603 6.603 12 N -0.728 5.728 13 C 0.267 3.733 14 C -0.540 4.540 15 H 0.063 0.937 16 C 0.063 3.937 17 N -0.886 5.886 18 Si 0.904 3.096 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C 0.055 3.945 23 H 0.094 0.906 24 O -0.276 6.276 25 C 0.144 3.856 26 C -0.205 4.205 27 C -0.082 4.082 28 C -0.164 4.164 29 C -0.082 4.082 30 C -0.152 4.152 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.046 0.954 35 H 0.049 0.951 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.400 0.600 39 H 0.387 0.613 40 H 0.025 0.975 41 H 0.025 0.975 42 H 0.265 0.735 43 H 0.126 0.874 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.127 0.873 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.181 -12.122 -15.365 28.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.276 6.276 4 C -0.011 4.011 5 H 0.117 0.883 6 C -0.205 4.205 7 C 0.053 3.947 8 H 0.147 0.853 9 N -0.394 5.394 10 C 0.394 3.606 11 O -0.483 6.483 12 N -0.379 5.379 13 C 0.146 3.854 14 C -0.578 4.578 15 H 0.081 0.919 16 C -0.141 4.141 17 N -0.524 5.524 18 Si 0.731 3.269 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.004 4.004 23 H 0.112 0.888 24 O -0.188 6.188 25 C 0.098 3.902 26 C -0.224 4.224 27 C -0.100 4.100 28 C -0.182 4.182 29 C -0.100 4.100 30 C -0.171 4.171 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.117 0.883 38 H 0.235 0.765 39 H 0.219 0.781 40 H 0.043 0.957 41 H 0.043 0.957 42 H 0.074 0.926 43 H 0.144 0.856 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.145 0.855 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -20.285 -12.619 -14.933 28.173 hybrid contribution -0.313 1.099 0.110 1.148 sum -20.598 -11.520 -14.823 27.870 Atomic orbital electron populations 1.21725 0.93778 1.02075 1.03200 1.22535 0.95684 0.84105 0.99950 1.88040 1.19234 1.25855 1.94514 1.24101 0.82443 0.97003 0.97528 0.88294 1.24056 0.98701 1.00395 0.97330 1.22180 0.96337 0.84881 0.91343 0.85321 1.44859 1.18641 1.12532 1.63386 1.16176 0.81782 0.83889 0.78781 1.90859 1.45121 1.47753 1.64541 1.45717 1.22119 1.09453 1.60653 1.18986 0.79106 0.95473 0.91876 1.21274 1.02635 0.95618 1.38320 0.91884 1.24946 0.95127 0.98420 0.95583 1.69992 1.05742 1.36043 1.40584 0.86361 0.78110 0.84061 0.78370 1.19643 1.20830 1.20830 1.24410 0.89491 0.86213 1.00246 0.88785 1.86005 1.53320 1.49629 1.29858 1.18993 0.92761 0.93571 0.84836 1.21222 1.05221 1.02394 0.93523 1.20915 0.95531 0.96529 0.97020 1.21031 1.01535 0.96945 0.98730 1.20951 0.98063 0.98964 0.91983 1.20457 1.00017 0.97183 0.99436 0.91236 0.91785 0.91943 0.93540 0.93260 0.90328 0.88286 0.76533 0.78068 0.95742 0.95720 0.92555 0.85621 0.86085 0.86171 0.85513 0.85160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.28 37.15 0.38 -0.70 16 2 C 0.05 0.44 6.51 37.15 0.24 0.68 16 3 O -0.36 -3.88 9.98 -50.16 -0.50 -4.38 16 4 C 0.05 0.47 4.24 -25.83 -0.11 0.36 16 5 H 0.10 0.73 7.89 -51.93 -0.41 0.32 16 6 C -0.17 -1.93 7.65 -25.92 -0.20 -2.13 16 7 C 0.16 2.09 4.16 -67.11 -0.28 1.81 16 8 H 0.13 1.75 7.50 -51.93 -0.39 1.36 16 9 N -0.74 -11.57 5.34 -57.88 -0.31 -11.88 16 10 C 0.69 14.53 8.57 -86.93 -0.74 13.79 16 11 O -0.60 -14.96 15.96 5.28 0.08 -14.87 16 12 N -0.73 -15.98 5.55 -66.42 -0.37 -16.35 16 13 C 0.27 7.25 5.43 -5.19 -0.03 7.22 16 14 C -0.54 -14.91 9.28 -34.44 -0.32 -15.23 16 15 H 0.06 1.64 7.60 -52.49 -0.40 1.24 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 17 N -0.89 -26.40 13.29 55.43 0.74 -25.67 16 18 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 19 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C 0.06 0.59 3.65 -25.83 -0.09 0.50 16 23 H 0.09 0.88 5.95 -51.93 -0.31 0.57 16 24 O -0.28 -3.36 8.61 -34.34 -0.30 -3.65 16 25 C 0.14 1.67 6.68 -39.22 -0.26 1.41 16 26 C -0.21 -2.10 9.02 -39.44 -0.36 -2.46 16 27 C -0.08 -0.74 10.04 -39.61 -0.40 -1.14 16 28 C -0.16 -1.43 10.04 -39.56 -0.40 -1.83 16 29 C -0.08 -0.74 10.04 -39.61 -0.40 -1.14 16 30 C -0.15 -1.63 9.99 -39.43 -0.39 -2.03 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.40 5.63 7.79 -40.82 -0.32 5.31 16 39 H 0.39 7.40 8.34 -40.82 -0.34 7.06 16 40 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.13 1.12 5.91 -52.48 -0.31 0.81 16 44 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 45 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 46 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 47 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 LS Contribution 395.39 15.07 5.96 5.96 Total: -1.00 -34.11 395.39 -10.27 -44.39 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -7.11 Total: 9.57 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -3.45 Total: 0.78 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: 0.06 Total: -53.89 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.71 Total: -22.91 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.11 -10.27 -44.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426426421.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.898 kcal (2) G-P(sol) polarization free energy of solvation -34.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds