Wall clock time and date at job start Tue Mar 31 2020 17:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00105 * 2 1 4 4 C 1.52999 * 109.47365 * 184.92642 * 3 2 1 5 5 N 1.46902 * 109.46912 * 52.41355 * 4 3 2 6 6 C 1.46895 * 111.00261 * 200.74386 * 5 4 3 7 7 C 1.50705 * 109.46569 * 66.04556 * 6 5 4 8 8 H 1.07996 * 120.00385 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99641 * 179.97438 * 7 6 5 10 10 N 1.31507 * 120.00162 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99666 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47485 * 90.00222 * 11 9 7 13 13 H 1.48501 * 109.46742 * 210.00097 * 11 9 7 14 14 H 1.48498 * 109.47081 * 329.99877 * 11 9 7 15 15 C 1.46905 * 110.99814 * 76.79320 * 5 4 3 16 16 C 1.50697 * 109.47169 * 200.99021 * 15 5 4 17 17 O 1.21284 * 119.99967 * 7.67521 * 16 15 5 18 18 N 1.34773 * 120.00604 * 187.67510 * 16 15 5 19 19 C 1.39314 * 120.00629 * 183.66800 * 18 16 15 20 20 C 1.39215 * 119.89901 * 335.29856 * 19 18 16 21 21 C 1.37081 * 120.10115 * 180.27505 * 20 19 18 22 22 C 1.40050 * 119.89753 * 359.45599 * 21 20 19 23 23 C 1.46844 * 120.10067 * 180.29761 * 22 21 20 24 24 C 1.50699 * 120.00134 * 179.97438 * 23 22 21 25 25 O 1.21297 * 120.00250 * 359.97438 * 23 22 21 26 26 C 1.40057 * 119.79984 * 0.27155 * 22 21 20 27 27 C 1.37077 * 119.90040 * 0.02562 * 26 22 21 28 28 H 1.09001 * 109.47517 * 304.93521 * 1 2 3 29 29 H 1.09003 * 109.47093 * 64.93426 * 1 2 3 30 30 H 1.09000 * 109.47119 * 184.93114 * 1 2 3 31 31 H 1.09003 * 109.46891 * 64.92460 * 3 2 1 32 32 H 1.09006 * 109.47352 * 304.93054 * 3 2 1 33 33 H 1.09002 * 109.47054 * 292.41621 * 4 3 2 34 34 H 1.09002 * 109.47268 * 172.41053 * 4 3 2 35 35 H 1.08994 * 109.47501 * 186.04492 * 6 5 4 36 36 H 1.08996 * 109.47221 * 306.05319 * 6 5 4 37 37 H 0.97000 * 120.00120 * 180.02562 * 10 9 7 38 38 H 1.08996 * 109.47108 * 80.99096 * 15 5 4 39 39 H 1.08997 * 109.47313 * 320.98949 * 15 5 4 40 40 H 0.97002 * 119.99615 * 3.66851 * 18 16 15 41 41 H 1.08005 * 119.94877 * 0.03130 * 20 19 18 42 42 H 1.08004 * 120.05074 * 179.72654 * 21 20 19 43 43 H 1.09007 * 109.47222 * 89.99910 * 24 23 22 44 44 H 1.08999 * 109.47582 * 209.99668 * 24 23 22 45 45 H 1.08999 * 109.47243 * 330.00151 * 24 23 22 46 46 H 1.08005 * 120.05175 * 180.02562 * 26 22 21 47 47 H 1.08003 * 119.95403 * 180.02562 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5306 1.1868 -0.1239 5 7 3.8634 0.3455 -1.2812 6 6 5.2240 -0.1957 -1.1648 7 6 5.2875 -1.1484 0.0012 8 1 4.4053 -1.3336 0.5960 9 6 6.4718 -1.7844 0.3081 10 7 7.5460 -1.5592 -0.4164 11 14 6.5504 -2.9658 1.7530 12 1 6.2221 -4.3377 1.2891 13 1 7.9189 -2.9524 2.3294 14 1 5.5727 -2.5463 2.7890 15 6 3.6983 1.0890 -2.5374 16 6 3.5366 0.1179 -3.6784 17 8 3.4171 -1.0679 -3.4532 18 7 3.5248 0.5669 -4.9490 19 6 3.2989 -0.3201 -5.9993 20 6 3.5908 -1.6720 -5.8408 21 6 3.3755 -2.5476 -6.8734 22 6 2.8504 -2.0820 -8.0854 23 6 2.6119 -3.0170 -9.1922 24 6 2.0463 -2.5137 -10.4952 25 8 2.8702 -4.1945 -9.0578 26 6 2.5529 -0.7219 -8.2384 27 6 2.7772 0.1473 -7.2024 28 1 -0.3634 0.5885 0.8425 29 1 -0.3633 0.4354 -0.9309 30 1 -0.3633 -1.0239 0.0883 31 1 1.7601 1.8145 0.9308 32 1 1.6205 1.8768 -0.8426 33 1 3.9348 0.7350 0.7820 34 1 3.9626 2.1784 -0.2594 35 1 5.4841 -0.7253 -2.0812 36 1 5.9276 0.6213 -1.0050 37 1 8.3791 -2.0069 -0.2007 38 1 4.5774 1.7097 -2.7104 39 1 2.8137 1.7223 -2.4712 40 1 3.6735 1.5078 -5.1323 41 1 3.9912 -2.0310 -4.9041 42 1 3.6064 -3.5955 -6.7510 43 1 2.8620 -2.2232 -11.1574 44 1 1.4598 -3.3029 -10.9658 45 1 1.4079 -1.6509 -10.3050 46 1 2.1475 -0.3586 -9.1711 47 1 2.5477 1.1962 -7.3193 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608564487.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:36 Heat of formation + Delta-G solvation = -66.788113 kcal Electronic energy + Delta-G solvation = -28574.327044 eV Core-core repulsion = 24530.403071 eV Total energy + Delta-G solvation = -4043.923973 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 3.43 seconds Orbital eigenvalues (eV) -40.63055 -39.54898 -38.11567 -37.50634 -35.91012 -34.62059 -32.52542 -31.73774 -30.81775 -29.85326 -29.07230 -27.84167 -26.09805 -25.07625 -23.55041 -22.74442 -22.32722 -20.93446 -19.91572 -19.74618 -17.89661 -16.97364 -16.71156 -16.51313 -15.95895 -15.68834 -15.44527 -15.13741 -14.98380 -14.82187 -14.50888 -14.30914 -14.04547 -13.94968 -13.62023 -13.55952 -13.24133 -12.83261 -12.78060 -12.52013 -12.33524 -12.27798 -12.03548 -11.89162 -11.66481 -11.24687 -11.18538 -11.09936 -10.70812 -10.59674 -10.41308 -10.15408 -9.91519 -9.77869 -9.33137 -9.23704 -9.10463 -8.98388 -8.36286 -8.08538 -7.28179 -5.95549 -3.94445 0.59940 1.39018 2.28876 2.95430 3.03067 3.39478 3.45430 3.49327 3.82924 4.00555 4.22947 4.49480 4.62611 4.76592 4.83884 4.87332 4.99933 5.15579 5.23269 5.27679 5.32338 5.40709 5.44366 5.46318 5.48359 5.56526 5.59871 5.65259 5.70683 5.73534 5.78326 5.92588 5.96746 6.08320 6.09856 6.27932 6.40588 6.56015 6.60002 7.01240 7.17234 7.23692 7.45197 7.46691 7.64891 7.86489 8.09550 8.16874 8.40469 8.58111 9.13678 9.68782 11.15867 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010591 B = 0.003007 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.084791 B = 9309.809820 C =10706.731079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.354 6.354 3 C 0.068 3.932 4 C 0.060 3.940 5 N -0.505 5.505 6 C 0.196 3.804 7 C -0.497 4.497 8 H 0.068 0.932 9 C 0.054 3.946 10 N -0.902 5.902 11 Si 0.897 3.103 12 H -0.280 1.280 13 H -0.289 1.289 14 H -0.273 1.273 15 C 0.039 3.961 16 C 0.509 3.491 17 O -0.464 6.464 18 N -0.680 5.680 19 C 0.199 3.801 20 C -0.155 4.155 21 C -0.033 4.033 22 C -0.211 4.211 23 C 0.396 3.604 24 C -0.200 4.200 25 O -0.466 6.466 26 C -0.051 4.051 27 C -0.178 4.178 28 H 0.031 0.969 29 H 0.031 0.969 30 H 0.080 0.920 31 H 0.043 0.957 32 H 0.033 0.967 33 H 0.101 0.899 34 H 0.038 0.962 35 H 0.034 0.966 36 H -0.012 1.012 37 H 0.260 0.740 38 H 0.057 0.943 39 H 0.091 0.909 40 H 0.409 0.591 41 H 0.166 0.834 42 H 0.134 0.866 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.132 0.868 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.656 10.858 -14.522 22.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.272 6.272 3 C -0.009 4.009 4 C -0.068 4.068 5 N -0.229 5.229 6 C 0.072 3.928 7 C -0.536 4.536 8 H 0.086 0.914 9 C -0.147 4.147 10 N -0.542 5.542 11 Si 0.726 3.274 12 H -0.206 1.206 13 H -0.215 1.215 14 H -0.198 1.198 15 C -0.093 4.093 16 C 0.296 3.704 17 O -0.333 6.333 18 N -0.325 5.325 19 C 0.101 3.899 20 C -0.175 4.175 21 C -0.052 4.052 22 C -0.213 4.213 23 C 0.276 3.724 24 C -0.257 4.257 25 O -0.343 6.343 26 C -0.070 4.070 27 C -0.198 4.198 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.099 0.901 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.119 0.881 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.006 0.994 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.109 0.891 40 H 0.244 0.756 41 H 0.183 0.817 42 H 0.152 0.848 43 H 0.113 0.887 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.150 0.850 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.624 8.781 -14.151 20.898 hybrid contribution 0.520 0.999 0.530 1.245 sum -12.104 9.779 -13.622 20.681 Atomic orbital electron populations 1.22669 0.83071 1.02150 0.98707 1.88210 1.17457 1.26609 1.94911 1.22615 0.95017 0.85098 0.98198 1.22109 0.92424 0.95273 0.96976 1.61741 1.31695 1.32210 0.97293 1.19795 0.80547 0.93915 0.98579 1.21139 0.95676 1.24326 1.12421 0.91411 1.24963 0.95653 0.97023 0.97019 1.69952 1.00803 1.43729 1.39746 0.86502 0.76844 0.81583 0.82513 1.20647 1.21534 1.19837 1.21900 1.01659 0.94115 0.91639 1.21191 0.75838 0.90752 0.82652 1.90678 1.43011 1.16478 1.83161 1.43743 1.71475 1.11619 1.05637 1.18201 0.93450 0.90637 0.87564 1.21805 1.02082 0.91832 1.01745 1.21279 0.92715 1.00393 0.90817 1.20410 1.09370 0.94826 0.96681 1.22368 0.73780 0.87795 0.88486 1.22228 1.02995 1.03732 0.96713 1.90549 1.41553 1.19091 1.83117 1.21004 0.96074 0.91767 0.98112 1.20632 1.05239 1.00504 0.93473 0.95064 0.95060 0.90133 0.93907 0.94894 0.88122 0.94441 0.94812 0.99400 0.93083 0.92535 0.89112 0.75550 0.81651 0.84783 0.88650 0.89666 0.89649 0.85010 0.85318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.54 16 2 O -0.35 -6.49 10.41 -35.23 -0.37 -6.85 16 3 C 0.07 1.04 6.07 37.16 0.23 1.27 16 4 C 0.06 1.09 5.24 -3.82 -0.02 1.07 16 5 N -0.50 -10.56 3.63 -237.52 -0.86 -11.42 16 6 C 0.20 5.06 4.38 -4.98 -0.02 5.04 16 7 C -0.50 -14.21 8.22 -34.44 -0.28 -14.49 16 8 H 0.07 1.97 7.33 -52.49 -0.38 1.59 16 9 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 10 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 11 Si 0.90 22.41 29.54 -169.99 -5.02 17.39 16 12 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 15 C 0.04 0.62 5.30 -4.97 -0.03 0.60 16 16 C 0.51 8.68 7.24 -10.99 -0.08 8.60 16 17 O -0.46 -10.19 12.58 5.55 0.07 -10.12 16 18 N -0.68 -8.59 5.34 -9.85 -0.05 -8.64 16 19 C 0.20 2.67 6.46 -83.73 -0.54 2.13 16 20 C -0.15 -2.48 8.75 -39.64 -0.35 -2.83 16 21 C -0.03 -0.49 9.56 -39.32 -0.38 -0.86 16 22 C -0.21 -2.57 5.87 -105.06 -0.62 -3.19 16 23 C 0.40 4.62 7.22 -30.83 -0.22 4.40 16 24 C -0.20 -1.38 9.75 36.00 0.35 -1.03 16 25 O -0.47 -7.22 17.08 5.54 0.09 -7.13 16 26 C -0.05 -0.48 9.33 -39.32 -0.37 -0.85 16 27 C -0.18 -1.78 9.89 -39.64 -0.39 -2.17 16 28 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.03 0.43 7.02 -51.93 -0.36 0.07 16 33 H 0.10 2.08 6.58 -51.93 -0.34 1.74 16 34 H 0.04 0.58 7.98 -51.93 -0.41 0.17 16 35 H 0.03 0.97 7.07 -51.93 -0.37 0.60 16 36 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.06 0.82 7.98 -51.93 -0.41 0.40 16 39 H 0.09 1.16 6.65 -51.93 -0.35 0.81 16 40 H 0.41 3.45 8.77 -40.82 -0.36 3.09 16 41 H 0.17 3.21 5.44 -52.48 -0.29 2.92 16 42 H 0.13 2.01 7.64 -52.48 -0.40 1.61 16 43 H 0.10 0.52 8.14 -51.92 -0.42 0.10 16 44 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.08 0.41 6.46 -51.93 -0.34 0.07 16 46 H 0.13 0.76 6.34 -52.48 -0.33 0.43 16 47 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 LS Contribution 391.53 15.07 5.90 5.90 Total: -1.00 -36.97 391.53 -8.06 -45.03 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -6.86 Total: 1.61 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -1.70 Total: 0.69 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: -0.18 Total: -46.52 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.20 Total: -24.10 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.97 -8.06 -45.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608564487.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.755 kcal (2) G-P(sol) polarization free energy of solvation -36.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.43 seconds