Wall clock time and date at job start Tue Mar 31 2020 17:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00105 * 2 1 4 4 C 1.52999 * 109.47365 * 184.92642 * 3 2 1 5 5 N 1.46902 * 109.46912 * 52.41355 * 4 3 2 6 6 C 1.46895 * 111.00261 * 200.74386 * 5 4 3 7 7 C 1.50705 * 109.46569 * 66.04556 * 6 5 4 8 8 H 1.07996 * 120.00385 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99641 * 179.97438 * 7 6 5 10 10 N 1.31507 * 120.00162 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99666 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47485 * 90.00222 * 11 9 7 13 13 H 1.48501 * 109.46742 * 210.00097 * 11 9 7 14 14 H 1.48498 * 109.47081 * 329.99877 * 11 9 7 15 15 C 1.46905 * 110.99814 * 76.79320 * 5 4 3 16 16 C 1.50697 * 109.47169 * 200.99021 * 15 5 4 17 17 O 1.21284 * 119.99967 * 7.67521 * 16 15 5 18 18 N 1.34773 * 120.00604 * 187.67510 * 16 15 5 19 19 C 1.39314 * 120.00629 * 183.66800 * 18 16 15 20 20 C 1.39215 * 119.89901 * 335.29856 * 19 18 16 21 21 C 1.37081 * 120.10115 * 180.27505 * 20 19 18 22 22 C 1.40050 * 119.89753 * 359.45599 * 21 20 19 23 23 C 1.46844 * 120.10067 * 180.29761 * 22 21 20 24 24 C 1.50699 * 120.00134 * 179.97438 * 23 22 21 25 25 O 1.21297 * 120.00250 * 359.97438 * 23 22 21 26 26 C 1.40057 * 119.79984 * 0.27155 * 22 21 20 27 27 C 1.37077 * 119.90040 * 0.02562 * 26 22 21 28 28 H 1.09001 * 109.47517 * 304.93521 * 1 2 3 29 29 H 1.09003 * 109.47093 * 64.93426 * 1 2 3 30 30 H 1.09000 * 109.47119 * 184.93114 * 1 2 3 31 31 H 1.09003 * 109.46891 * 64.92460 * 3 2 1 32 32 H 1.09006 * 109.47352 * 304.93054 * 3 2 1 33 33 H 1.09002 * 109.47054 * 292.41621 * 4 3 2 34 34 H 1.09002 * 109.47268 * 172.41053 * 4 3 2 35 35 H 1.08994 * 109.47501 * 186.04492 * 6 5 4 36 36 H 1.08996 * 109.47221 * 306.05319 * 6 5 4 37 37 H 0.97000 * 120.00120 * 180.02562 * 10 9 7 38 38 H 1.08996 * 109.47108 * 80.99096 * 15 5 4 39 39 H 1.08997 * 109.47313 * 320.98949 * 15 5 4 40 40 H 0.97002 * 119.99615 * 3.66851 * 18 16 15 41 41 H 1.08005 * 119.94877 * 0.03130 * 20 19 18 42 42 H 1.08004 * 120.05074 * 179.72654 * 21 20 19 43 43 H 1.09007 * 109.47222 * 89.99910 * 24 23 22 44 44 H 1.08999 * 109.47582 * 209.99668 * 24 23 22 45 45 H 1.08999 * 109.47243 * 330.00151 * 24 23 22 46 46 H 1.08005 * 120.05175 * 180.02562 * 26 22 21 47 47 H 1.08003 * 119.95403 * 180.02562 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5306 1.1868 -0.1239 5 7 3.8634 0.3455 -1.2812 6 6 5.2240 -0.1957 -1.1648 7 6 5.2875 -1.1484 0.0012 8 1 4.4053 -1.3336 0.5960 9 6 6.4718 -1.7844 0.3081 10 7 7.5460 -1.5592 -0.4164 11 14 6.5504 -2.9658 1.7530 12 1 6.2221 -4.3377 1.2891 13 1 7.9189 -2.9524 2.3294 14 1 5.5727 -2.5463 2.7890 15 6 3.6983 1.0890 -2.5374 16 6 3.5366 0.1179 -3.6784 17 8 3.4171 -1.0679 -3.4532 18 7 3.5248 0.5669 -4.9490 19 6 3.2989 -0.3201 -5.9993 20 6 3.5908 -1.6720 -5.8408 21 6 3.3755 -2.5476 -6.8734 22 6 2.8504 -2.0820 -8.0854 23 6 2.6119 -3.0170 -9.1922 24 6 2.0463 -2.5137 -10.4952 25 8 2.8702 -4.1945 -9.0578 26 6 2.5529 -0.7219 -8.2384 27 6 2.7772 0.1473 -7.2024 28 1 -0.3634 0.5885 0.8425 29 1 -0.3633 0.4354 -0.9309 30 1 -0.3633 -1.0239 0.0883 31 1 1.7601 1.8145 0.9308 32 1 1.6205 1.8768 -0.8426 33 1 3.9348 0.7350 0.7820 34 1 3.9626 2.1784 -0.2594 35 1 5.4841 -0.7253 -2.0812 36 1 5.9276 0.6213 -1.0050 37 1 8.3791 -2.0069 -0.2007 38 1 4.5774 1.7097 -2.7104 39 1 2.8137 1.7223 -2.4712 40 1 3.6735 1.5078 -5.1323 41 1 3.9912 -2.0310 -4.9041 42 1 3.6064 -3.5955 -6.7510 43 1 2.8620 -2.2232 -11.1574 44 1 1.4598 -3.3029 -10.9658 45 1 1.4079 -1.6509 -10.3050 46 1 2.1475 -0.3586 -9.1711 47 1 2.5477 1.1962 -7.3193 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000608564487.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:33 Heat of formation + Delta-G solvation = -94.971458 kcal Electronic energy + Delta-G solvation = -28575.549165 eV Core-core repulsion = 24530.403071 eV Total energy + Delta-G solvation = -4045.146095 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -41.77153 -40.62946 -39.33753 -38.70476 -37.39525 -35.83740 -34.68470 -32.68878 -31.82395 -31.06719 -30.37643 -29.23961 -27.35171 -26.60181 -24.68569 -24.07030 -23.74663 -22.23714 -21.17176 -20.85589 -19.00690 -18.55407 -18.17670 -17.67602 -17.18805 -17.17057 -16.56272 -16.41816 -16.23113 -16.00930 -15.95535 -15.59866 -15.25793 -15.08377 -14.96684 -14.75472 -14.43493 -14.15830 -13.85535 -13.78457 -13.76094 -13.50370 -13.10200 -12.96426 -12.95550 -12.82870 -12.58941 -12.46630 -12.34835 -12.20998 -11.97494 -11.62630 -11.47398 -11.26706 -10.89919 -10.61311 -10.50653 -10.36706 -10.03526 -9.14619 -8.89268 -8.19748 -6.26199 -0.39537 0.42625 1.27558 1.35844 1.39669 1.49532 1.76196 1.92850 2.40037 2.84266 3.06916 3.13490 3.18791 3.34270 3.66701 3.90263 3.95818 4.15243 4.20797 4.30367 4.31975 4.33690 4.37847 4.42206 4.56838 4.58504 4.61405 4.62406 4.70210 4.74690 4.77393 4.90111 4.94421 5.04366 5.16484 5.18680 5.22151 5.27768 5.31645 5.38790 5.52532 5.67091 5.95932 6.07562 6.32032 6.39707 6.55187 6.59425 6.72186 6.89450 7.22802 7.41678 8.91261 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010591 B = 0.003007 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.084791 B = 9309.809820 C =10706.731079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.404 6.404 3 C 0.072 3.928 4 C 0.058 3.942 5 N -0.526 5.526 6 C 0.219 3.781 7 C -0.510 4.510 8 H 0.056 0.944 9 C 0.000 4.000 10 N -0.935 5.935 11 Si 0.962 3.038 12 H -0.283 1.283 13 H -0.277 1.277 14 H -0.263 1.263 15 C 0.039 3.961 16 C 0.504 3.496 17 O -0.527 6.527 18 N -0.658 5.658 19 C 0.183 3.817 20 C -0.186 4.186 21 C -0.059 4.059 22 C -0.218 4.218 23 C 0.394 3.606 24 C -0.190 4.190 25 O -0.520 6.520 26 C -0.029 4.029 27 C -0.156 4.156 28 H 0.055 0.945 29 H 0.045 0.955 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.067 0.933 35 H -0.007 1.007 36 H -0.028 1.028 37 H 0.262 0.738 38 H 0.077 0.923 39 H 0.135 0.865 40 H 0.433 0.567 41 H 0.118 0.882 42 H 0.107 0.893 43 H 0.119 0.881 44 H 0.087 0.913 45 H 0.119 0.881 46 H 0.188 0.812 47 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.142 14.617 -16.662 26.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.323 6.323 3 C -0.004 4.004 4 C -0.070 4.070 5 N -0.250 5.250 6 C 0.093 3.907 7 C -0.548 4.548 8 H 0.074 0.926 9 C -0.197 4.197 10 N -0.576 5.576 11 Si 0.787 3.213 12 H -0.209 1.209 13 H -0.202 1.202 14 H -0.187 1.187 15 C -0.092 4.092 16 C 0.292 3.708 17 O -0.400 6.400 18 N -0.305 5.305 19 C 0.085 3.915 20 C -0.207 4.207 21 C -0.078 4.078 22 C -0.220 4.220 23 C 0.276 3.724 24 C -0.246 4.246 25 O -0.400 6.400 26 C -0.047 4.047 27 C -0.176 4.176 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.011 0.989 36 H -0.011 1.011 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.153 0.847 40 H 0.273 0.727 41 H 0.135 0.865 42 H 0.126 0.874 43 H 0.137 0.863 44 H 0.106 0.894 45 H 0.137 0.863 46 H 0.205 0.795 47 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -15.133 12.621 -16.320 25.586 hybrid contribution 1.241 -0.127 1.102 1.664 sum -13.893 12.494 -15.218 24.098 Atomic orbital electron populations 1.22810 0.80871 1.02670 1.00463 1.88146 1.20101 1.28662 1.95343 1.22659 0.92480 0.84540 1.00763 1.22166 0.94971 0.95618 0.94216 1.61484 1.28137 1.35065 1.00358 1.19280 0.83299 0.92690 0.95468 1.21424 0.95285 1.24976 1.13158 0.92606 1.25826 0.95349 0.98731 0.99800 1.70065 1.01326 1.44883 1.41373 0.85495 0.77521 0.78854 0.79426 1.20931 1.20223 1.18711 1.22048 1.04367 0.93803 0.88981 1.21513 0.74947 0.90060 0.84297 1.90694 1.46067 1.18962 1.84304 1.43402 1.70260 1.12665 1.04127 1.18383 0.94482 0.89445 0.89162 1.21452 1.04574 0.94189 1.00437 1.21153 0.94866 0.99241 0.92551 1.20715 1.08797 0.96895 0.95593 1.23167 0.72354 0.86809 0.90028 1.22266 1.03956 1.04868 0.93555 1.90541 1.43984 1.21296 1.84165 1.21592 0.93560 0.89728 0.99839 1.21141 1.02341 1.02918 0.91181 0.92653 0.93628 0.90558 0.91337 0.91880 0.91865 0.91496 0.98878 1.01092 0.92912 0.90527 0.84741 0.72742 0.86456 0.87449 0.86330 0.89404 0.86278 0.79479 0.80354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 11.01 113.37 1.25 1.97 16 2 O -0.40 -14.58 10.41 -148.98 -1.55 -16.13 16 3 C 0.07 2.06 6.07 71.98 0.44 2.49 16 4 C 0.06 2.07 5.24 86.30 0.45 2.52 16 5 N -0.53 -22.55 3.63 -905.37 -3.29 -25.83 16 6 C 0.22 11.96 4.38 85.56 0.37 12.34 16 7 C -0.51 -30.74 8.22 25.60 0.21 -30.53 16 8 H 0.06 3.42 7.33 -2.91 -0.02 3.40 16 9 C 0.00 0.01 5.46 84.66 0.46 0.48 16 10 N -0.94 -58.86 13.29 21.45 0.28 -58.57 16 11 Si 0.96 47.62 29.54 68.60 2.03 49.64 16 12 H -0.28 -14.07 7.11 99.48 0.71 -13.36 16 13 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 14 H -0.26 -12.45 7.11 99.48 0.71 -11.74 16 15 C 0.04 1.22 5.30 85.56 0.45 1.67 16 16 C 0.50 17.64 7.24 87.66 0.63 18.28 16 17 O -0.53 -25.13 12.58 -3.04 -0.04 -25.17 16 18 N -0.66 -15.92 5.34 -303.46 -1.62 -17.54 16 19 C 0.18 4.78 6.46 38.42 0.25 5.02 16 20 C -0.19 -6.57 8.75 22.23 0.19 -6.37 16 21 C -0.06 -1.92 9.56 22.44 0.21 -1.70 16 22 C -0.22 -5.13 5.87 -20.15 -0.12 -5.25 16 23 C 0.39 8.80 7.22 27.94 0.20 9.01 16 24 C -0.19 -1.85 9.75 71.24 0.69 -1.16 16 25 O -0.52 -16.88 17.08 -3.08 -0.05 -16.93 16 26 C -0.03 -0.41 9.33 22.44 0.21 -0.20 16 27 C -0.16 -2.42 9.89 22.23 0.22 -2.20 16 28 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.06 1.40 7.02 -2.38 -0.02 1.38 16 33 H 0.06 2.70 6.58 -2.39 -0.02 2.69 16 34 H 0.07 1.95 7.98 -2.39 -0.02 1.93 16 35 H -0.01 -0.43 7.07 -2.39 -0.02 -0.45 16 36 H -0.03 -1.60 8.12 -2.39 -0.02 -1.62 16 37 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 38 H 0.08 2.10 7.98 -2.39 -0.02 2.08 16 39 H 0.13 2.95 6.65 -2.39 -0.02 2.94 16 40 H 0.43 5.93 8.77 -92.71 -0.81 5.11 16 41 H 0.12 5.30 5.44 -2.91 -0.02 5.29 16 42 H 0.11 3.85 7.64 -2.91 -0.02 3.83 16 43 H 0.12 0.71 8.14 -2.38 -0.02 0.69 16 44 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.12 0.36 6.46 -2.39 -0.02 0.35 16 46 H 0.19 0.66 6.34 -2.91 -0.02 0.65 16 47 H 0.18 1.10 8.06 -2.91 -0.02 1.08 16 Total: -1.00 -93.13 391.53 2.08 -91.05 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.18 Total: 13.12 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 6.14 Total: 6.36 kcal Atomic # 7 Polarization: -97.32 SS G_CDS: -4.62 Total: -101.95 kcal Atomic # 8 Polarization: -56.59 SS G_CDS: -1.64 Total: -58.23 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.03 Total: 49.64 kcal Total: -93.13 2.08 -91.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608564487.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.923 kcal (2) G-P(sol) polarization free energy of solvation -93.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds