Wall clock time and date at job start Tue Mar 31 2020 17:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42899 * 109.47522 * 2 1 4 4 C 1.35793 * 117.00142 * 179.97438 * 3 2 1 5 5 C 1.38829 * 119.93179 * 0.02562 * 4 3 2 6 6 C 1.37797 * 120.15017 * 179.97438 * 5 4 3 7 7 C 1.39692 * 120.00454 * 359.97438 * 6 5 4 8 8 C 1.47609 * 120.07261 * 180.02562 * 7 6 5 9 9 O 1.21579 * 120.00349 * 179.97438 * 8 7 6 10 10 N 1.34779 * 119.99520 * 359.97438 * 8 7 6 11 11 C 1.46509 * 119.99489 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.46696 * 180.02562 * 11 10 8 13 13 H 1.09004 * 112.96906 * 53.32064 * 12 11 10 14 14 C 1.53946 * 113.76998 * 185.00301 * 12 11 10 15 15 C 1.53936 * 86.29308 * 137.90715 * 14 12 11 16 16 N 1.47582 * 86.11998 * 336.39155 * 15 14 12 17 17 C 1.36929 * 134.49474 * 204.64016 * 16 15 14 18 18 H 1.08003 * 120.00093 * 179.97438 * 17 16 15 19 19 C 1.38810 * 120.00200 * 359.97438 * 17 16 15 20 20 N 1.31617 * 120.00112 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00159 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46619 * 60.00093 * 21 19 17 23 23 H 1.48502 * 109.46912 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47169 * 300.00217 * 21 19 17 25 25 C 1.39736 * 119.86077 * 0.02562 * 7 6 5 26 26 C 1.38145 * 119.84560 * 0.02562 * 25 7 6 27 27 O 1.36001 * 119.99874 * 179.97438 * 26 25 7 28 28 C 1.42900 * 117.00270 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.47217 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47463 * 300.00229 * 1 2 3 31 31 H 1.09001 * 109.46762 * 60.00385 * 1 2 3 32 32 H 1.09002 * 109.47463 * 239.99771 * 2 1 3 33 33 H 1.09006 * 109.46732 * 120.00092 * 2 1 3 34 34 H 1.08005 * 119.92535 * 359.97438 * 5 4 3 35 35 H 1.08002 * 119.99133 * 180.02562 * 6 5 4 36 36 H 0.96990 * 120.00378 * 0.02562 * 10 8 7 37 37 H 1.08988 * 109.47077 * 300.00050 * 11 10 8 38 38 H 1.09002 * 109.47099 * 60.00160 * 11 10 8 39 39 H 1.08998 * 113.74413 * 252.25767 * 14 12 11 40 40 H 1.08999 * 113.74119 * 23.45098 * 14 12 11 41 41 H 1.09000 * 113.77250 * 90.69897 * 15 14 12 42 42 H 1.09005 * 113.76835 * 221.97937 * 15 14 12 43 43 H 0.96999 * 120.00322 * 179.97438 * 20 19 17 44 44 H 1.07993 * 120.07811 * 180.27762 * 25 7 6 45 45 H 1.09001 * 109.47323 * 300.00201 * 28 27 26 46 46 H 1.08999 * 109.46819 * 59.99573 * 28 27 26 47 47 H 1.09001 * 109.47479 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3526 1.5251 0.0005 5 6 4.1969 0.4231 0.0005 6 6 5.5637 0.5984 0.0005 7 6 6.1027 1.8871 0.0000 8 6 7.5666 2.0766 -0.0005 9 8 8.0343 3.1988 -0.0014 10 7 8.3847 1.0055 0.0000 11 6 9.8376 1.1936 0.0000 12 6 10.5285 -0.1715 0.0000 13 1 10.1857 -0.8218 -0.8049 14 6 12.0609 -0.0914 0.1228 15 6 11.9444 -1.2747 1.1006 16 7 10.5569 -0.8239 1.3236 17 6 9.6573 -0.9572 2.3472 18 1 8.6737 -0.5194 2.2622 19 6 10.0095 -1.6551 3.4943 20 7 11.2080 -2.1891 3.5978 21 14 8.7825 -1.8365 4.8911 22 1 7.5728 -2.5430 4.3985 23 1 9.3984 -2.6194 5.9924 24 1 8.4007 -0.4918 5.3923 25 6 5.2532 2.9966 0.0000 26 6 3.8838 2.8139 0.0011 27 8 3.0541 3.8915 0.0017 28 6 3.6671 5.1824 0.0005 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 3.7816 -0.5739 0.0005 35 1 6.2182 -0.2608 0.0001 36 1 8.0115 0.1102 0.0003 37 1 10.1320 1.7494 -0.8901 38 1 10.1319 1.7502 0.8898 39 1 12.5885 -0.3345 -0.7995 40 1 12.4165 0.8291 0.5856 41 1 12.0176 -2.2504 0.6203 42 1 12.5842 -1.1838 1.9785 43 1 11.4543 -2.6765 4.3995 44 1 5.6661 3.9944 -0.0049 45 1 4.2881 5.2905 0.8898 46 1 4.2861 5.2898 -0.8902 47 1 2.8947 5.9515 0.0007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039018721.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:45 Heat of formation + Delta-G solvation = -27.947950 kcal Electronic energy + Delta-G solvation = -28698.877516 eV Core-core repulsion = 24656.637779 eV Total energy + Delta-G solvation = -4042.239737 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.84425 -39.40587 -38.72215 -37.95104 -36.61919 -34.14494 -32.28171 -32.15300 -30.54190 -30.07315 -28.13764 -27.82781 -26.96393 -24.31458 -23.44869 -23.37956 -22.20259 -21.48117 -20.34922 -19.27904 -18.84537 -17.80190 -16.79958 -16.73690 -16.50342 -16.27716 -15.66590 -15.38752 -15.28202 -14.96006 -14.56562 -14.45909 -14.26107 -13.79113 -13.50442 -13.30848 -13.27908 -13.00052 -12.91956 -12.68014 -12.24082 -12.14084 -11.88184 -11.55907 -11.44213 -11.23517 -11.20312 -11.10455 -11.03070 -10.92860 -10.74498 -10.57980 -10.06392 -9.78407 -9.71781 -9.37847 -8.94117 -8.81152 -8.62271 -7.98446 -6.91326 -5.77950 -3.10556 0.81989 1.18671 2.91004 2.96507 3.08594 3.36787 3.42296 3.42845 3.49018 3.84917 4.41621 4.52859 4.63681 4.71815 4.75760 4.86389 4.93960 4.97576 5.05711 5.09594 5.11322 5.17375 5.31409 5.37849 5.38161 5.49125 5.51972 5.60117 5.66577 5.72850 5.87682 5.90898 6.04059 6.09789 6.20287 6.30995 6.38963 6.40049 6.60697 6.69436 6.84618 6.86720 7.23155 7.36498 7.39443 7.57670 7.85700 7.96911 8.50711 9.02723 9.69633 10.57777 11.38694 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011115 B = 0.003187 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.442320 B = 8784.648121 C =10171.123994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.303 6.303 4 C 0.125 3.875 5 C -0.182 4.182 6 C -0.075 4.075 7 C -0.128 4.128 8 C 0.557 3.443 9 O -0.550 6.550 10 N -0.707 5.707 11 C 0.123 3.877 12 C 0.125 3.875 13 H 0.050 0.950 14 C -0.156 4.156 15 C 0.159 3.841 16 N -0.602 5.602 17 C -0.221 4.221 18 H 0.078 0.922 19 C -0.006 4.006 20 N -0.920 5.920 21 Si 0.906 3.094 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.284 1.284 25 C -0.114 4.114 26 C 0.087 3.913 27 O -0.307 6.307 28 C 0.024 3.976 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.141 0.859 35 H 0.135 0.865 36 H 0.402 0.598 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.053 0.947 40 H 0.077 0.923 41 H 0.026 0.974 42 H 0.073 0.927 43 H 0.254 0.746 44 H 0.148 0.852 45 H 0.057 0.943 46 H 0.056 0.944 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.042 6.236 -10.623 20.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.025 4.025 3 O -0.217 6.217 4 C 0.078 3.922 5 C -0.200 4.200 6 C -0.094 4.094 7 C -0.131 4.131 8 C 0.344 3.656 9 O -0.430 6.430 10 N -0.357 5.357 11 C -0.001 4.001 12 C 0.018 3.982 13 H 0.067 0.933 14 C -0.194 4.194 15 C 0.034 3.966 16 N -0.329 5.329 17 C -0.348 4.348 18 H 0.096 0.904 19 C -0.202 4.202 20 N -0.567 5.567 21 Si 0.736 3.264 22 H -0.212 1.212 23 H -0.215 1.215 24 H -0.211 1.211 25 C -0.134 4.134 26 C 0.041 3.959 27 O -0.221 6.221 28 C -0.071 4.071 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.159 0.841 35 H 0.153 0.847 36 H 0.237 0.763 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.044 0.956 42 H 0.092 0.908 43 H 0.064 0.936 44 H 0.166 0.834 45 H 0.076 0.924 46 H 0.075 0.925 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -16.144 7.046 -10.284 20.397 hybrid contribution -0.546 -0.881 0.879 1.359 sum -16.691 6.165 -9.406 20.126 Atomic orbital electron populations 1.21759 0.92648 1.02817 1.03570 1.22860 0.96036 0.81957 1.01664 1.86125 1.18054 1.29137 1.88336 1.18407 0.83128 0.91104 0.99541 1.21002 0.93652 0.97691 1.07688 1.21110 0.94685 0.96454 0.97194 1.19712 0.93446 0.93352 1.06601 1.18060 0.85917 0.84881 0.76740 1.90730 1.77353 1.23823 1.51076 1.45884 1.07515 1.08861 1.73458 1.21799 0.78038 0.98731 1.01564 1.22513 0.94134 0.91409 0.90182 0.93300 1.23769 0.94684 1.01402 0.99591 1.22192 0.86901 0.92251 0.95273 1.46063 1.13004 1.62068 1.11733 1.18888 0.94175 1.28928 0.92828 0.90444 1.24744 0.96995 1.00346 0.98140 1.69802 1.18715 1.39958 1.28177 0.86298 0.80252 0.77728 0.82099 1.21237 1.21535 1.21099 1.21134 0.90332 1.00417 1.01514 1.18049 0.88658 0.85561 1.03583 1.86154 1.33580 1.13025 1.89298 1.23103 0.99897 0.82363 1.01739 0.90334 0.91473 0.91531 0.91830 0.91730 0.84124 0.84707 0.76264 0.92009 0.90792 0.92792 0.90473 0.95574 0.90830 0.93627 0.83395 0.92406 0.92501 0.88181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.28 37.15 0.38 -0.62 16 2 C 0.05 0.42 5.46 37.15 0.20 0.63 16 3 O -0.30 -3.72 9.90 -33.75 -0.33 -4.06 16 4 C 0.12 1.63 6.71 -38.93 -0.26 1.37 16 5 C -0.18 -2.15 9.01 -39.52 -0.36 -2.51 16 6 C -0.08 -0.99 9.53 -39.20 -0.37 -1.36 16 7 C -0.13 -1.93 5.87 -104.97 -0.62 -2.55 16 8 C 0.56 9.81 7.76 -12.44 -0.10 9.72 16 9 O -0.55 -11.17 16.34 5.30 0.09 -11.08 16 10 N -0.71 -12.09 5.48 -61.32 -0.34 -12.43 16 11 C 0.12 2.22 5.54 -4.04 -0.02 2.20 16 12 C 0.13 2.37 4.33 -66.86 -0.29 2.08 16 13 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 14 C -0.16 -2.80 7.86 -25.81 -0.20 -3.00 16 15 C 0.16 3.60 7.51 -2.98 -0.02 3.58 16 16 N -0.60 -14.49 3.57 -170.75 -0.61 -15.10 16 17 C -0.22 -5.87 10.51 -15.06 -0.16 -6.03 16 18 H 0.08 1.98 7.80 -52.48 -0.41 1.57 16 19 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 20 N -0.92 -26.78 11.39 55.49 0.63 -26.15 16 21 Si 0.91 21.95 29.55 -169.99 -5.02 16.92 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 25 C -0.11 -1.63 8.58 -39.06 -0.33 -1.97 16 26 C 0.09 1.20 6.69 -39.18 -0.26 0.94 16 27 O -0.31 -3.99 10.28 -34.41 -0.35 -4.34 16 28 C 0.02 0.22 9.81 101.05 0.99 1.21 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.46 7.65 -51.93 -0.40 0.06 16 33 H 0.06 0.50 7.65 -51.93 -0.40 0.11 16 34 H 0.14 1.29 6.27 -52.48 -0.33 0.96 16 35 H 0.14 1.60 6.39 -52.49 -0.34 1.27 16 36 H 0.40 6.39 6.49 -40.82 -0.26 6.13 16 37 H 0.06 1.02 8.14 -51.94 -0.42 0.60 16 38 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.08 1.38 8.10 -51.93 -0.42 0.96 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 1.86 7.16 -51.93 -0.37 1.49 16 43 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 44 H 0.15 2.02 5.87 -52.49 -0.31 1.72 16 45 H 0.06 0.52 7.66 -51.93 -0.40 0.12 16 46 H 0.06 0.48 7.66 -51.93 -0.40 0.09 16 47 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 389.08 15.07 5.86 5.86 Total: -1.00 -33.57 389.08 -8.56 -42.13 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -6.97 Total: 4.81 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -1.52 Total: 3.43 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -0.31 Total: -53.68 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.60 Total: -19.48 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.57 -8.56 -42.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039018721.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.182 kcal (2) G-P(sol) polarization free energy of solvation -33.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds