Wall clock time and date at job start Tue Mar 31 2020 17:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35654 * 117.00053 * 2 1 4 4 C 1.38705 * 120.15100 * 0.02597 * 3 2 1 5 5 C 1.38054 * 120.08725 * 179.97438 * 4 3 2 6 6 C 1.38545 * 120.38825 * 359.97438 * 5 4 3 7 7 C 1.37798 * 120.30187 * 359.75686 * 6 5 4 8 8 C 1.39706 * 119.90286 * 0.51591 * 7 6 5 9 9 C 1.47540 * 120.19080 * 179.74037 * 8 7 6 10 10 O 1.21585 * 120.00348 * 179.72989 * 9 8 7 11 11 N 1.34779 * 119.99392 * 359.72583 * 9 8 7 12 12 C 1.46507 * 119.99572 * 174.87060 * 11 9 8 13 13 C 1.53001 * 109.49579 * 63.49785 * 12 11 9 14 14 O 1.42910 * 109.47078 * 54.29391 * 13 12 11 15 15 C 1.53039 * 109.49571 * 303.43696 * 12 11 9 16 16 C 1.53039 * 109.53816 * 301.41248 * 15 12 11 17 17 C 1.53193 * 109.31124 * 298.63615 * 16 15 12 18 18 N 1.46925 * 108.77567 * 54.63736 * 17 16 15 19 19 C 1.36935 * 120.63196 * 126.41079 * 18 17 16 20 20 H 1.07995 * 119.99776 * 323.82343 * 19 18 17 21 21 C 1.38812 * 119.99883 * 143.81584 * 19 18 17 22 22 N 1.31619 * 120.00072 * 2.29227 * 21 19 18 23 23 Si 1.86806 * 119.99887 * 182.29478 * 21 19 18 24 24 H 1.48496 * 109.46976 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47056 * 119.99776 * 23 21 19 26 26 H 1.48495 * 109.46824 * 239.99853 * 23 21 19 27 27 C 1.46995 * 118.75259 * 306.38884 * 18 17 16 28 28 H 1.09001 * 109.46778 * 299.99762 * 1 2 3 29 29 H 1.08994 * 109.47608 * 59.99507 * 1 2 3 30 30 H 1.08999 * 109.47215 * 179.97438 * 1 2 3 31 31 H 1.08006 * 119.95558 * 359.95668 * 4 3 2 32 32 H 1.07996 * 119.80635 * 179.97438 * 5 4 3 33 33 H 1.07999 * 119.85240 * 180.02562 * 6 5 4 34 34 H 1.07997 * 120.04876 * 180.27923 * 7 6 5 35 35 H 0.96991 * 120.00441 * 355.15068 * 11 9 8 36 36 H 1.09004 * 109.47223 * 174.28870 * 13 12 11 37 37 H 1.08990 * 109.47682 * 294.29335 * 13 12 11 38 38 H 0.96694 * 113.99895 * 179.97438 * 14 13 12 39 39 H 1.09004 * 109.46292 * 61.43623 * 15 12 11 40 40 H 1.09006 * 109.45798 * 181.39074 * 15 12 11 41 41 H 1.08992 * 109.49841 * 58.58921 * 16 15 12 42 42 H 1.09006 * 109.49526 * 178.65827 * 16 15 12 43 43 H 1.08998 * 109.58635 * 174.42774 * 17 16 15 44 44 H 1.09004 * 109.58871 * 294.70663 * 17 16 15 45 45 H 0.97001 * 120.00018 * 179.97438 * 22 21 19 46 46 H 1.09005 * 109.58491 * 293.82757 * 27 18 17 47 47 H 1.08998 * 109.62822 * 173.37992 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2925 2.3740 0.0005 5 6 1.9206 3.6033 0.0011 6 6 3.3037 3.6837 0.0016 7 6 4.0668 2.5363 0.0067 8 6 3.4441 1.2857 0.0004 9 6 4.2550 0.0531 -0.0001 10 8 3.7095 -1.0335 -0.0006 11 7 5.6005 0.1317 0.0000 12 6 6.4054 -1.0872 0.1131 13 6 6.1550 -1.9792 -1.1045 14 8 6.3938 -1.2324 -2.2993 15 6 6.0155 -1.8405 1.3869 16 6 6.2338 -0.9371 2.6028 17 6 7.7165 -0.5636 2.6967 18 7 8.1361 0.0309 1.4202 19 6 8.7454 1.2568 1.3883 20 1 8.4410 2.0292 2.0791 21 6 9.7544 1.5066 0.4683 22 7 10.0945 0.5807 -0.4031 23 14 10.6295 3.1570 0.4670 24 1 10.0655 4.0172 1.5380 25 1 12.0793 2.9487 0.7123 26 1 10.4400 3.8167 -0.8498 27 6 7.8900 -0.7153 0.1779 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2138 2.3194 0.0003 32 1 1.3304 4.5077 0.0011 33 1 3.7861 4.6499 0.0024 34 1 5.1446 2.6037 0.0116 35 1 6.0358 0.9956 -0.0706 36 1 6.8275 -2.8364 -1.0714 37 1 5.1222 -2.3271 -1.0940 38 1 6.2544 -1.7364 -3.1127 39 1 4.9654 -2.1279 1.3319 40 1 6.6318 -2.7344 1.4832 41 1 5.6366 -0.0318 2.4953 42 1 5.9334 -1.4659 3.5074 43 1 7.8614 0.1578 3.5009 44 1 8.3067 -1.4578 2.8973 45 1 10.7993 0.7554 -1.0462 46 1 8.4946 -1.6223 0.1706 47 1 8.1489 -0.0943 -0.6796 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484448607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:18 Heat of formation + Delta-G solvation = -64.866985 kcal Electronic energy + Delta-G solvation = -30939.083581 eV Core-core repulsion = 26895.242914 eV Total energy + Delta-G solvation = -4043.840667 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.47285 -39.35177 -37.42331 -36.87335 -35.77083 -33.58555 -32.59312 -31.43086 -30.07928 -29.97383 -29.42482 -27.26378 -25.38697 -24.95493 -23.82590 -22.14961 -22.04004 -20.88834 -20.03108 -18.50519 -18.25559 -17.03273 -16.66548 -16.64561 -16.08425 -15.76326 -15.24527 -14.83522 -14.62462 -14.49452 -14.40291 -13.97127 -13.83030 -13.46859 -13.31188 -12.99806 -12.91403 -12.58144 -12.26027 -12.18651 -12.16501 -11.81913 -11.56748 -11.33513 -11.14342 -11.13734 -11.06940 -10.87563 -10.75776 -10.42269 -10.13154 -9.90830 -9.76468 -9.52254 -9.46493 -8.99548 -8.79279 -8.49082 -8.27104 -8.08118 -6.54381 -5.79885 -3.34396 1.00062 1.43099 3.27639 3.28684 3.34941 3.43206 3.44399 3.82458 4.11014 4.45853 4.71425 4.79898 4.81140 5.00424 5.06001 5.10850 5.29843 5.35010 5.39594 5.41269 5.49178 5.61535 5.72000 5.77055 5.84067 5.93410 5.94281 6.08025 6.17427 6.24641 6.29318 6.43828 6.47472 6.50313 6.58883 6.61473 6.72169 6.78347 6.90575 7.07318 7.19002 7.39851 7.47520 7.77163 7.80760 8.18771 8.36796 8.52174 8.95625 9.22395 9.81287 10.43019 11.25970 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012165 B = 0.004593 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.137765 B = 6094.248838 C = 7155.775429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.278 6.278 3 C 0.178 3.822 4 C -0.226 4.226 5 C -0.061 4.061 6 C -0.167 4.167 7 C -0.043 4.043 8 C -0.162 4.162 9 C 0.557 3.443 10 O -0.538 6.538 11 N -0.682 5.682 12 C 0.158 3.842 13 C 0.070 3.930 14 O -0.559 6.559 15 C -0.122 4.122 16 C -0.128 4.128 17 C 0.143 3.857 18 N -0.591 5.591 19 C -0.259 4.259 20 H 0.064 0.936 21 C 0.013 3.987 22 N -0.898 5.898 23 Si 0.900 3.100 24 H -0.277 1.277 25 H -0.289 1.289 26 H -0.289 1.289 27 C 0.173 3.827 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.099 0.901 31 H 0.130 0.870 32 H 0.125 0.875 33 H 0.129 0.871 34 H 0.139 0.861 35 H 0.404 0.596 36 H 0.042 0.958 37 H 0.057 0.943 38 H 0.366 0.634 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.048 0.952 43 H 0.052 0.948 44 H 0.017 0.983 45 H 0.255 0.745 46 H 0.028 0.972 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.550 1.019 -0.611 16.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.189 6.189 3 C 0.130 3.870 4 C -0.245 4.245 5 C -0.080 4.080 6 C -0.185 4.185 7 C -0.062 4.062 8 C -0.166 4.166 9 C 0.344 3.656 10 O -0.417 6.417 11 N -0.332 5.332 12 C 0.070 3.930 13 C -0.009 4.009 14 O -0.362 6.362 15 C -0.160 4.160 16 C -0.167 4.167 17 C 0.017 3.983 18 N -0.314 5.314 19 C -0.389 4.389 20 H 0.082 0.918 21 C -0.187 4.187 22 N -0.541 5.541 23 Si 0.730 3.270 24 H -0.202 1.202 25 H -0.216 1.216 26 H -0.216 1.216 27 C 0.047 3.953 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.117 0.883 31 H 0.147 0.853 32 H 0.143 0.857 33 H 0.146 0.854 34 H 0.157 0.843 35 H 0.241 0.759 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.210 0.790 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.035 0.965 45 H 0.065 0.935 46 H 0.046 0.954 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -16.528 0.522 -0.264 16.538 hybrid contribution 0.353 0.949 -0.453 1.109 sum -16.175 1.472 -0.717 16.258 Atomic orbital electron populations 1.23102 0.79399 1.03948 1.00857 1.86398 1.20141 1.25521 1.86860 1.19056 0.91071 0.84679 0.92193 1.21172 0.99968 0.92213 1.11164 1.21052 0.94733 0.96860 0.95310 1.21009 0.93709 0.98638 1.05181 1.21392 1.00646 0.90797 0.93390 1.19607 0.90790 0.94779 1.11437 1.17891 0.82436 0.88147 0.77109 1.90679 1.72050 1.28343 1.50634 1.45720 1.04544 1.10763 1.72206 1.21241 0.95927 0.84085 0.91794 1.22589 0.99516 0.93547 0.85239 1.86572 1.92700 1.41731 1.15179 1.21739 1.01991 0.97966 0.94298 1.21914 0.99544 0.99018 0.96216 1.20979 0.91424 0.96099 0.89789 1.43985 1.68939 1.18960 0.99500 1.19156 1.12056 0.89138 1.18549 0.91847 1.25349 0.96630 0.97573 0.99121 1.69901 1.31201 1.32932 1.20058 0.86263 0.79817 0.83517 0.77436 1.20232 1.21564 1.21610 1.21170 0.85579 0.96528 0.92062 0.92885 0.92911 0.88260 0.85256 0.85706 0.85353 0.84344 0.75920 0.94021 0.92510 0.78957 0.90925 0.92205 0.92549 0.93336 0.92973 0.96548 0.93466 0.95372 0.87137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 101.05 0.99 1.21 16 2 O -0.28 -4.30 8.57 -40.54 -0.35 -4.65 16 3 C 0.18 2.71 6.70 -38.70 -0.26 2.45 16 4 C -0.23 -2.69 9.03 -39.48 -0.36 -3.04 16 5 C -0.06 -0.67 10.03 -39.54 -0.40 -1.06 16 6 C -0.17 -2.03 10.02 -39.63 -0.40 -2.43 16 7 C -0.04 -0.64 9.53 -39.19 -0.37 -1.02 16 8 C -0.16 -2.73 5.89 -104.84 -0.62 -3.34 16 9 C 0.56 10.74 7.05 -12.47 -0.09 10.65 16 10 O -0.54 -11.30 11.48 -16.59 -0.19 -11.49 16 11 N -0.68 -13.36 3.89 -48.52 -0.19 -13.55 16 12 C 0.16 3.17 0.45 -131.70 -0.06 3.11 16 13 C 0.07 1.31 5.68 37.16 0.21 1.52 16 14 O -0.56 -10.36 13.08 -35.23 -0.46 -10.83 16 15 C -0.12 -2.32 4.42 -26.69 -0.12 -2.44 16 16 C -0.13 -2.41 5.93 -26.61 -0.16 -2.57 16 17 C 0.14 3.03 6.52 -3.71 -0.02 3.01 16 18 N -0.59 -14.28 2.91 -172.27 -0.50 -14.78 16 19 C -0.26 -6.76 9.54 -15.06 -0.14 -6.90 16 20 H 0.06 1.63 7.83 -52.49 -0.41 1.22 16 21 C 0.01 0.34 5.28 -17.43 -0.09 0.25 16 22 N -0.90 -25.13 10.75 55.49 0.60 -24.53 16 23 Si 0.90 20.93 29.55 -169.99 -5.02 15.91 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 27 C 0.17 4.06 3.79 -3.68 -0.01 4.05 16 28 H 0.05 0.43 7.66 -51.93 -0.40 0.04 16 29 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 30 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.13 1.17 6.30 -52.48 -0.33 0.84 16 32 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 33 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.14 2.06 6.42 -52.49 -0.34 1.72 16 35 H 0.40 8.15 6.53 -40.82 -0.27 7.88 16 36 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.06 1.08 6.42 -51.93 -0.33 0.75 16 38 H 0.37 4.95 9.12 45.56 0.42 5.37 16 39 H 0.07 1.43 6.14 -51.93 -0.32 1.11 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.06 1.12 7.42 -51.93 -0.39 0.74 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 46 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.11 2.95 5.91 -51.93 -0.31 2.64 16 LS Contribution 369.87 15.07 5.57 5.57 Total: -1.00 -32.15 369.87 -8.44 -40.58 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -6.00 Total: 14.31 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: -1.89 Total: 3.45 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: -0.09 Total: -52.86 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -1.00 Total: -26.96 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.15 -8.44 -40.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484448607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.283 kcal (2) G-P(sol) polarization free energy of solvation -32.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds