Wall clock time and date at job start Tue Mar 31 2020 17:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35654 * 117.00053 * 2 1 4 4 C 1.38705 * 120.15100 * 0.02597 * 3 2 1 5 5 C 1.38054 * 120.08725 * 179.97438 * 4 3 2 6 6 C 1.38545 * 120.38825 * 359.97438 * 5 4 3 7 7 C 1.37798 * 120.30187 * 359.75686 * 6 5 4 8 8 C 1.39706 * 119.90286 * 0.51591 * 7 6 5 9 9 C 1.47540 * 120.19080 * 179.74037 * 8 7 6 10 10 O 1.21585 * 120.00348 * 179.72989 * 9 8 7 11 11 N 1.34779 * 119.99392 * 359.72583 * 9 8 7 12 12 C 1.46507 * 119.99572 * 174.87060 * 11 9 8 13 13 C 1.53001 * 109.49579 * 63.49785 * 12 11 9 14 14 O 1.42910 * 109.47078 * 54.29391 * 13 12 11 15 15 C 1.53039 * 109.49571 * 303.43696 * 12 11 9 16 16 C 1.53039 * 109.53816 * 301.41248 * 15 12 11 17 17 C 1.53193 * 109.31124 * 298.63615 * 16 15 12 18 18 N 1.46925 * 108.77567 * 54.63736 * 17 16 15 19 19 C 1.36935 * 120.63196 * 126.41079 * 18 17 16 20 20 H 1.07995 * 119.99776 * 323.82343 * 19 18 17 21 21 C 1.38812 * 119.99883 * 143.81584 * 19 18 17 22 22 N 1.31619 * 120.00072 * 2.29227 * 21 19 18 23 23 Si 1.86806 * 119.99887 * 182.29478 * 21 19 18 24 24 H 1.48496 * 109.46976 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47056 * 119.99776 * 23 21 19 26 26 H 1.48495 * 109.46824 * 239.99853 * 23 21 19 27 27 C 1.46995 * 118.75259 * 306.38884 * 18 17 16 28 28 H 1.09001 * 109.46778 * 299.99762 * 1 2 3 29 29 H 1.08994 * 109.47608 * 59.99507 * 1 2 3 30 30 H 1.08999 * 109.47215 * 179.97438 * 1 2 3 31 31 H 1.08006 * 119.95558 * 359.95668 * 4 3 2 32 32 H 1.07996 * 119.80635 * 179.97438 * 5 4 3 33 33 H 1.07999 * 119.85240 * 180.02562 * 6 5 4 34 34 H 1.07997 * 120.04876 * 180.27923 * 7 6 5 35 35 H 0.96991 * 120.00441 * 355.15068 * 11 9 8 36 36 H 1.09004 * 109.47223 * 174.28870 * 13 12 11 37 37 H 1.08990 * 109.47682 * 294.29335 * 13 12 11 38 38 H 0.96694 * 113.99895 * 179.97438 * 14 13 12 39 39 H 1.09004 * 109.46292 * 61.43623 * 15 12 11 40 40 H 1.09006 * 109.45798 * 181.39074 * 15 12 11 41 41 H 1.08992 * 109.49841 * 58.58921 * 16 15 12 42 42 H 1.09006 * 109.49526 * 178.65827 * 16 15 12 43 43 H 1.08998 * 109.58635 * 174.42774 * 17 16 15 44 44 H 1.09004 * 109.58871 * 294.70663 * 17 16 15 45 45 H 0.97001 * 120.00018 * 179.97438 * 22 21 19 46 46 H 1.09005 * 109.58491 * 293.82757 * 27 18 17 47 47 H 1.08998 * 109.62822 * 173.37992 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2925 2.3740 0.0005 5 6 1.9206 3.6033 0.0011 6 6 3.3037 3.6837 0.0016 7 6 4.0668 2.5363 0.0067 8 6 3.4441 1.2857 0.0004 9 6 4.2550 0.0531 -0.0001 10 8 3.7095 -1.0335 -0.0006 11 7 5.6005 0.1317 0.0000 12 6 6.4054 -1.0872 0.1131 13 6 6.1550 -1.9792 -1.1045 14 8 6.3938 -1.2324 -2.2993 15 6 6.0155 -1.8405 1.3869 16 6 6.2338 -0.9371 2.6028 17 6 7.7165 -0.5636 2.6967 18 7 8.1361 0.0309 1.4202 19 6 8.7454 1.2568 1.3883 20 1 8.4410 2.0292 2.0791 21 6 9.7544 1.5066 0.4683 22 7 10.0945 0.5807 -0.4031 23 14 10.6295 3.1570 0.4670 24 1 10.0655 4.0172 1.5380 25 1 12.0793 2.9487 0.7123 26 1 10.4400 3.8167 -0.8498 27 6 7.8900 -0.7153 0.1779 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2138 2.3194 0.0003 32 1 1.3304 4.5077 0.0011 33 1 3.7861 4.6499 0.0024 34 1 5.1446 2.6037 0.0116 35 1 6.0358 0.9956 -0.0706 36 1 6.8275 -2.8364 -1.0714 37 1 5.1222 -2.3271 -1.0940 38 1 6.2544 -1.7364 -3.1127 39 1 4.9654 -2.1279 1.3319 40 1 6.6318 -2.7344 1.4832 41 1 5.6366 -0.0318 2.4953 42 1 5.9334 -1.4659 3.5074 43 1 7.8614 0.1578 3.5009 44 1 8.3067 -1.4578 2.8973 45 1 10.7993 0.7554 -1.0462 46 1 8.4946 -1.6223 0.1706 47 1 8.1489 -0.0943 -0.6796 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484448607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:17 Heat of formation + Delta-G solvation = -86.616142 kcal Electronic energy + Delta-G solvation = -30940.026695 eV Core-core repulsion = 26895.242914 eV Total energy + Delta-G solvation = -4044.783781 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.71720 -40.68067 -38.72369 -38.14713 -37.34016 -35.32652 -34.24388 -32.75159 -31.76062 -31.06278 -30.89786 -28.08862 -27.31367 -26.60362 -25.00061 -23.93692 -23.07822 -22.36080 -21.54498 -20.03914 -19.44729 -18.70692 -18.19522 -18.04245 -17.20528 -16.87920 -16.71741 -16.16368 -16.06925 -15.94838 -15.71283 -15.54998 -15.15961 -14.95122 -14.71689 -14.44938 -14.31706 -14.07381 -13.98111 -13.53272 -13.37519 -13.07013 -12.99916 -12.79794 -12.75719 -12.57005 -12.50909 -12.23165 -12.04459 -11.99991 -11.90762 -11.67108 -11.46627 -11.21580 -11.00386 -10.52339 -10.31293 -10.05006 -9.70964 -9.18349 -8.51533 -7.82118 -5.39661 -0.06367 0.43807 1.49026 1.51709 1.60996 2.05361 2.36370 2.41226 2.52574 2.92995 3.33622 3.37399 3.68716 3.76157 3.84275 4.02263 4.12329 4.22590 4.25439 4.26013 4.37824 4.40462 4.40708 4.45533 4.49446 4.58524 4.65048 4.72952 4.81701 4.86618 4.89690 4.95039 4.99910 5.13034 5.20549 5.21652 5.35067 5.36441 5.49672 5.50404 5.68370 5.78681 5.82554 5.84388 6.46518 6.49860 6.84712 6.93993 7.20520 7.47004 7.86039 8.43839 9.21773 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012165 B = 0.004593 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.137765 B = 6094.248838 C = 7155.775429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.314 6.314 3 C 0.164 3.836 4 C -0.220 4.220 5 C -0.046 4.046 6 C -0.168 4.168 7 C -0.056 4.056 8 C -0.200 4.200 9 C 0.556 3.444 10 O -0.562 6.562 11 N -0.684 5.684 12 C 0.159 3.841 13 C 0.077 3.923 14 O -0.577 6.577 15 C -0.116 4.116 16 C -0.115 4.115 17 C 0.142 3.858 18 N -0.604 5.604 19 C -0.263 4.263 20 H 0.066 0.934 21 C -0.036 4.036 22 N -0.928 5.928 23 Si 0.964 3.036 24 H -0.265 1.265 25 H -0.295 1.295 26 H -0.291 1.291 27 C 0.190 3.810 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.108 0.892 31 H 0.162 0.838 32 H 0.167 0.833 33 H 0.152 0.848 34 H 0.125 0.875 35 H 0.399 0.601 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.387 0.613 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.044 0.956 42 H 0.075 0.925 43 H 0.056 0.944 44 H 0.017 0.983 45 H 0.249 0.751 46 H 0.004 0.996 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.924 2.797 0.025 19.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.226 6.226 3 C 0.116 3.884 4 C -0.238 4.238 5 C -0.064 4.064 6 C -0.186 4.186 7 C -0.075 4.075 8 C -0.203 4.203 9 C 0.345 3.655 10 O -0.443 6.443 11 N -0.334 5.334 12 C 0.071 3.929 13 C -0.002 4.002 14 O -0.384 6.384 15 C -0.154 4.154 16 C -0.154 4.154 17 C 0.017 3.983 18 N -0.328 5.328 19 C -0.393 4.393 20 H 0.083 0.917 21 C -0.233 4.233 22 N -0.573 5.573 23 Si 0.792 3.208 24 H -0.189 1.189 25 H -0.222 1.222 26 H -0.218 1.218 27 C 0.064 3.936 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.127 0.873 31 H 0.180 0.820 32 H 0.185 0.815 33 H 0.170 0.830 34 H 0.143 0.857 35 H 0.234 0.766 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.235 0.765 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.063 0.937 42 H 0.094 0.906 43 H 0.074 0.926 44 H 0.035 0.965 45 H 0.059 0.941 46 H 0.022 0.978 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.933 2.295 0.379 19.075 hybrid contribution 0.988 0.414 -0.655 1.255 sum -17.945 2.708 -0.276 18.150 Atomic orbital electron populations 1.23406 0.76813 1.05305 1.02561 1.86337 1.22998 1.26298 1.86951 1.19284 0.90734 0.85826 0.92510 1.21555 1.01453 0.91253 1.09583 1.21555 0.94366 0.98083 0.92406 1.21333 0.94552 0.98530 1.04148 1.21378 1.00349 0.91319 0.94477 1.19553 0.91732 0.94119 1.14934 1.18300 0.82093 0.89016 0.76135 1.90640 1.72285 1.29473 1.51906 1.45677 1.04921 1.10078 1.72676 1.21083 0.93775 0.84812 0.93213 1.22481 0.99484 0.93363 0.84886 1.86525 1.92766 1.42835 1.16238 1.21688 1.01789 0.98107 0.93807 1.21785 0.97564 0.98772 0.97325 1.21071 0.92744 0.95984 0.88517 1.44168 1.69141 1.18747 1.00698 1.19408 1.11796 0.89995 1.18088 0.91655 1.26008 0.97488 1.00723 0.99061 1.70085 1.31643 1.34769 1.20766 0.85264 0.78067 0.80034 0.77431 1.18875 1.22218 1.21802 1.20761 0.87467 0.94530 0.90825 0.91076 0.91098 0.87319 0.82017 0.81505 0.83027 0.85689 0.76586 0.92974 0.92766 0.76536 0.91237 0.91392 0.93679 0.90632 0.92593 0.96508 0.94106 0.97785 0.90445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 9.81 113.37 1.11 1.35 16 2 O -0.31 -9.49 8.57 -68.78 -0.59 -10.08 16 3 C 0.16 4.83 6.70 22.84 0.15 4.98 16 4 C -0.22 -4.50 9.03 22.34 0.20 -4.29 16 5 C -0.05 -0.82 10.03 22.30 0.22 -0.60 16 6 C -0.17 -3.68 10.02 22.24 0.22 -3.45 16 7 C -0.06 -1.66 9.53 22.52 0.21 -1.45 16 8 C -0.20 -6.77 5.89 -20.01 -0.12 -6.89 16 9 C 0.56 22.02 7.05 86.70 0.61 22.63 16 10 O -0.56 -24.16 11.48 16.93 0.19 -23.97 16 11 N -0.68 -27.78 3.89 -425.69 -1.66 -29.44 16 12 C 0.16 6.59 0.45 3.68 0.00 6.59 16 13 C 0.08 2.94 5.68 71.98 0.41 3.35 16 14 O -0.58 -22.02 13.08 -148.98 -1.95 -23.97 16 15 C -0.12 -4.42 4.42 30.62 0.14 -4.29 16 16 C -0.12 -4.31 5.93 30.67 0.18 -4.13 16 17 C 0.14 6.02 6.52 86.36 0.56 6.58 16 18 N -0.60 -29.82 2.91 -698.93 -2.03 -31.86 16 19 C -0.26 -13.90 9.54 84.03 0.80 -13.10 16 20 H 0.07 3.38 7.83 -2.91 -0.02 3.35 16 21 C -0.04 -1.97 5.28 84.86 0.45 -1.52 16 22 N -0.93 -53.57 10.75 21.65 0.23 -53.33 16 23 Si 0.96 43.62 29.55 68.60 2.03 45.64 16 24 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 25 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 26 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 27 C 0.19 9.30 3.79 86.35 0.33 9.63 16 28 H 0.07 0.96 7.66 -2.39 -0.02 0.94 16 29 H 0.07 0.95 7.66 -2.39 -0.02 0.93 16 30 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.16 2.17 6.30 -2.91 -0.02 2.15 16 32 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 33 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16 34 H 0.13 3.88 6.42 -2.91 -0.02 3.86 16 35 H 0.40 16.90 6.53 -92.71 -0.61 16.30 16 36 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.05 2.11 6.42 -2.39 -0.02 2.09 16 38 H 0.39 10.62 9.12 -74.06 -0.68 9.95 16 39 H 0.07 2.75 6.14 -2.38 -0.01 2.73 16 40 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 41 H 0.04 1.79 7.42 -2.39 -0.02 1.77 16 42 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 43 H 0.06 2.29 7.93 -2.39 -0.02 2.27 16 44 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 45 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 46 H 0.00 0.22 8.14 -2.38 -0.02 0.20 16 47 H 0.08 4.33 5.91 -2.39 -0.01 4.32 16 Total: -1.00 -71.71 369.87 1.44 -70.26 By element: Atomic # 1 Polarization: 41.61 SS G_CDS: -0.27 Total: 41.34 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: 5.49 Total: 15.40 kcal Atomic # 7 Polarization: -111.17 SS G_CDS: -3.46 Total: -114.63 kcal Atomic # 8 Polarization: -55.68 SS G_CDS: -2.34 Total: -58.02 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -71.71 1.44 -70.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484448607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.352 kcal (2) G-P(sol) polarization free energy of solvation -71.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds