Wall clock time and date at job start Tue Mar 31 2020 18:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31977 * 119.61678 * 2 1 4 4 C 1.32345 * 121.68689 * 180.02562 * 3 2 1 5 5 N 1.39234 * 119.62743 * 179.97438 * 4 3 2 6 6 C 1.47013 * 111.00192 * 123.63708 * 5 4 3 7 7 C 1.53094 * 109.25915 * 177.60838 * 6 5 4 8 8 O 1.43016 * 109.26328 * 56.85026 * 7 6 5 9 9 C 1.43023 * 113.73318 * 301.32701 * 8 7 6 10 10 C 1.47017 * 111.00176 * 359.97438 * 5 4 3 11 11 C 1.39099 * 120.73890 * 0.02562 * 4 3 2 12 12 C 1.38267 * 119.17055 * 359.97438 * 11 4 3 13 13 C 1.38599 * 119.62101 * 179.97438 * 2 1 3 14 14 N 1.40242 * 120.40359 * 359.97438 * 13 2 1 15 15 C 1.34771 * 119.99838 * 204.58038 * 14 13 2 16 16 O 1.21592 * 120.00388 * 5.68770 * 15 14 13 17 17 N 1.34786 * 120.00013 * 185.68991 * 15 14 13 18 18 C 1.46492 * 120.00390 * 179.97438 * 17 15 14 19 19 H 1.09009 * 109.46787 * 34.99769 * 18 17 15 20 20 C 1.52996 * 109.47485 * 275.00147 * 18 17 15 21 21 C 1.50695 * 109.47250 * 154.99787 * 18 17 15 22 22 H 1.08004 * 120.00151 * 0.02562 * 21 18 17 23 23 C 1.37884 * 120.00123 * 180.02562 * 21 18 17 24 24 N 1.31510 * 119.99699 * 359.97438 * 23 21 18 25 25 Si 1.86799 * 119.99942 * 180.02562 * 23 21 18 26 26 H 1.48499 * 109.47347 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47180 * 120.00056 * 25 23 21 28 28 H 1.48505 * 109.46745 * 239.99812 * 25 23 21 29 29 H 1.08998 * 109.47505 * 89.99899 * 1 2 3 30 30 H 1.08996 * 109.47135 * 210.00309 * 1 2 3 31 31 H 1.09005 * 109.47090 * 329.99607 * 1 2 3 32 32 H 1.09003 * 109.50307 * 297.54071 * 6 5 4 33 33 H 1.09004 * 109.50703 * 57.66634 * 6 5 4 34 34 H 1.09000 * 109.50593 * 296.90987 * 7 6 5 35 35 H 1.09003 * 109.54395 * 176.80525 * 7 6 5 36 36 H 1.08999 * 109.50763 * 298.73470 * 9 8 7 37 37 H 1.08997 * 109.54044 * 178.62569 * 9 8 7 38 38 H 1.08996 * 109.51016 * 302.33011 * 10 5 4 39 39 H 1.08998 * 109.50154 * 62.46011 * 10 5 4 40 40 H 1.08003 * 120.41381 * 180.02562 * 11 4 3 41 41 H 1.07998 * 120.77263 * 180.02562 * 12 11 4 42 42 H 0.97004 * 119.99467 * 24.57859 * 14 13 2 43 43 H 0.97009 * 119.99378 * 359.97438 * 17 15 14 44 44 H 1.09005 * 109.46875 * 300.00104 * 20 18 17 45 45 H 1.09008 * 109.47179 * 59.99348 * 20 18 17 46 46 H 1.08996 * 109.47392 * 179.97438 * 20 18 17 47 47 H 0.96998 * 119.99764 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1593 1.1473 0.0000 4 6 3.4818 1.1951 -0.0005 5 7 4.1260 2.4295 -0.0010 6 6 5.0442 2.5452 1.1413 7 6 5.7734 3.8893 1.0689 8 8 4.8113 4.9470 1.0385 9 6 3.9012 4.8659 -0.0619 10 6 3.1530 3.5316 -0.0015 11 6 4.2355 0.0260 -0.0016 12 6 3.5860 -1.1945 -0.0016 13 6 2.1921 -1.2049 0.0005 14 7 1.4914 -2.4197 0.0016 15 6 2.0743 -3.5334 0.4876 16 8 3.1659 -3.4659 1.0190 17 7 1.4474 -4.7221 0.3847 18 6 2.0812 -5.9327 0.9124 19 1 2.6417 -5.6858 1.8142 20 6 3.0328 -6.5095 -0.1376 21 6 1.0211 -6.9514 1.2431 22 1 -0.0207 -6.7203 1.0763 23 6 1.3810 -8.1786 1.7585 24 7 2.6496 -8.4602 1.9611 25 14 0.0670 -9.4416 2.1677 26 1 -1.2720 -8.8838 1.8495 27 1 0.2950 -10.6707 1.3661 28 1 0.1333 -9.7742 3.6135 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 4.4777 2.4880 2.0708 33 1 5.7716 1.7340 1.1072 34 1 6.3822 3.9249 0.1655 35 1 6.4134 4.0046 1.9437 36 1 4.4556 4.9299 -0.9982 37 1 3.1866 5.6869 -0.0052 38 1 2.5002 3.4405 -0.8696 39 1 2.5560 3.4904 0.9095 40 1 5.3146 0.0712 -0.0016 41 1 4.1455 -2.1183 -0.0020 42 1 0.5871 -2.4583 -0.3474 43 1 0.5763 -4.7758 -0.0390 44 1 2.4724 -6.7563 -1.0393 45 1 3.7996 -5.7725 -0.3768 46 1 3.5048 -7.4100 0.2553 47 1 2.9028 -9.3236 2.3233 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119449607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:00 Heat of formation + Delta-G solvation = -19.040713 kcal Electronic energy + Delta-G solvation = -28648.984287 eV Core-core repulsion = 24639.423548 eV Total energy + Delta-G solvation = -4009.560739 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.10261 -39.94566 -38.85690 -36.37460 -35.06932 -34.17214 -32.97076 -32.44420 -31.54787 -30.46187 -28.69927 -28.14506 -26.21763 -25.30802 -24.47776 -23.20037 -21.84977 -21.38679 -20.63488 -19.94373 -18.50594 -17.70632 -17.41868 -16.59079 -16.15158 -15.84842 -15.51136 -15.38617 -15.27761 -15.04459 -14.75020 -14.60619 -14.25256 -14.06154 -13.82387 -13.37294 -13.16863 -12.65736 -12.49663 -12.42579 -12.41606 -12.33709 -11.84700 -11.78519 -11.67558 -11.20603 -11.10648 -10.99428 -10.88919 -10.70794 -10.35583 -10.29763 -10.10230 -9.86078 -9.57676 -9.35352 -9.11037 -9.07133 -8.62671 -8.10182 -7.53103 -6.18654 -4.27938 1.11779 1.38118 2.98890 3.19820 3.23364 3.28413 3.31078 3.53617 3.61323 3.95184 4.21550 4.27325 4.54794 4.67975 4.76366 4.77183 4.82288 4.87935 4.99928 5.08285 5.14349 5.19167 5.27115 5.33075 5.42167 5.46183 5.50996 5.51850 5.62526 5.70511 5.85234 5.98806 6.11016 6.33483 6.51141 6.71490 6.77388 6.79024 6.90166 7.01917 7.10280 7.14417 7.36040 7.55813 7.74630 7.90890 7.98011 8.08371 8.63690 8.75636 9.11394 9.40096 10.87471 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.028140 B = 0.002154 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.796201 B =12998.283079 C =13560.656991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.108 3.892 3 N -0.496 5.496 4 C 0.275 3.725 5 N -0.473 5.473 6 C 0.020 3.980 7 C 0.065 3.935 8 O -0.386 6.386 9 C 0.060 3.940 10 C 0.032 3.968 11 C -0.162 4.162 12 C -0.066 4.066 13 C 0.119 3.881 14 N -0.686 5.686 15 C 0.692 3.308 16 O -0.582 6.582 17 N -0.716 5.716 18 C 0.279 3.721 19 H 0.050 0.950 20 C -0.148 4.148 21 C -0.534 4.534 22 H 0.062 0.938 23 C 0.066 3.934 24 N -0.882 5.882 25 Si 0.903 3.097 26 H -0.273 1.273 27 H -0.282 1.282 28 H -0.283 1.283 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.054 0.946 33 H 0.095 0.905 34 H 0.062 0.938 35 H 0.103 0.897 36 H 0.059 0.941 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.057 0.943 40 H 0.135 0.865 41 H 0.163 0.837 42 H 0.404 0.596 43 H 0.387 0.613 44 H 0.026 0.974 45 H 0.015 0.985 46 H 0.091 0.909 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.318 22.197 -5.787 22.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.033 4.033 3 N -0.211 5.211 4 C 0.043 3.957 5 N -0.192 5.192 6 C -0.107 4.107 7 C -0.012 4.012 8 O -0.304 6.304 9 C -0.017 4.017 10 C -0.096 4.096 11 C -0.185 4.185 12 C -0.094 4.094 13 C 0.019 3.981 14 N -0.333 5.333 15 C 0.392 3.608 16 O -0.460 6.460 17 N -0.367 5.367 18 C 0.178 3.822 19 H 0.068 0.932 20 C -0.207 4.207 21 C -0.573 4.573 22 H 0.080 0.920 23 C -0.137 4.137 24 N -0.520 5.520 25 Si 0.731 3.269 26 H -0.198 1.198 27 H -0.208 1.208 28 H -0.209 1.209 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.113 0.887 34 H 0.080 0.920 35 H 0.121 0.879 36 H 0.077 0.923 37 H 0.119 0.881 38 H 0.113 0.887 39 H 0.076 0.924 40 H 0.153 0.847 41 H 0.181 0.819 42 H 0.240 0.760 43 H 0.219 0.781 44 H 0.046 0.954 45 H 0.034 0.966 46 H 0.110 0.890 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.254 22.934 -5.494 23.616 hybrid contribution -1.457 -1.944 0.230 2.440 sum -0.202 20.990 -5.264 21.641 Atomic orbital electron populations 1.20636 0.88851 1.03570 1.02844 1.20646 0.96422 0.86277 0.99948 1.67244 1.08596 1.28607 1.16607 1.19569 0.88238 0.89942 0.97968 1.59573 1.18624 1.00554 1.40481 1.22978 0.96393 0.99969 0.91363 1.22692 0.90694 0.84966 1.02893 1.87997 1.45510 1.48246 1.48679 1.22784 0.92299 0.96775 0.89836 1.22620 0.93851 0.89397 1.03702 1.21441 1.00939 0.90895 1.05218 1.21864 0.92908 0.99534 0.95099 1.18292 0.92085 0.85515 1.02256 1.42856 1.18478 1.06484 1.65525 1.16184 0.84672 0.80453 0.79444 1.90835 1.20715 1.85131 1.49291 1.45905 1.22339 1.06525 1.61919 1.18716 0.92126 0.78469 0.92910 0.93214 1.22106 0.98349 1.01796 0.98413 1.21228 0.92846 0.99098 1.44108 0.91992 1.24887 0.95677 0.98106 0.95063 1.69906 1.15320 1.22970 1.43759 0.86368 0.81417 0.81013 0.78137 1.19750 1.20838 1.20851 0.90524 0.90850 0.90311 0.92802 0.88660 0.91963 0.87922 0.92278 0.88132 0.88713 0.92448 0.84681 0.81924 0.76028 0.78065 0.95449 0.96596 0.89029 0.92545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.00 9.61 36.01 0.35 -0.65 16 2 C 0.11 1.45 6.80 -82.40 -0.56 0.89 16 3 N -0.50 -6.82 8.62 -8.49 -0.07 -6.90 16 4 C 0.28 3.69 6.41 -154.85 -0.99 2.70 16 5 N -0.47 -5.34 4.75 -172.84 -0.82 -6.17 16 6 C 0.02 0.19 5.40 -3.71 -0.02 0.17 16 7 C 0.06 0.52 7.01 37.21 0.26 0.78 16 8 O -0.39 -3.85 10.83 -35.23 -0.38 -4.23 16 9 C 0.06 0.50 7.01 37.21 0.26 0.76 16 10 C 0.03 0.32 4.82 -3.71 -0.02 0.31 16 11 C -0.16 -2.20 9.22 -39.25 -0.36 -2.56 16 12 C -0.07 -1.04 8.82 -39.14 -0.35 -1.38 16 13 C 0.12 1.78 6.43 -83.44 -0.54 1.24 16 14 N -0.69 -10.13 4.99 -14.08 -0.07 -10.20 16 15 C 0.69 13.39 8.35 -86.91 -0.73 12.66 16 16 O -0.58 -13.34 13.21 5.28 0.07 -13.27 16 17 N -0.72 -14.21 5.07 -59.82 -0.30 -14.51 16 18 C 0.28 6.88 2.56 -69.09 -0.18 6.70 16 19 H 0.05 1.42 7.58 -51.92 -0.39 1.03 16 20 C -0.15 -3.57 9.26 37.16 0.34 -3.23 16 21 C -0.53 -13.73 8.73 -34.44 -0.30 -14.03 16 22 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 23 C 0.07 1.74 5.30 -17.82 -0.09 1.64 16 24 N -0.88 -24.33 11.32 55.43 0.63 -23.70 16 25 Si 0.90 20.21 29.54 -169.99 -5.02 15.19 16 26 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 28 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.67 6.96 -51.93 -0.36 0.31 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.10 0.81 6.83 -51.93 -0.35 0.46 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.09 0.97 7.86 -51.93 -0.41 0.57 16 39 H 0.06 0.66 8.03 -51.93 -0.42 0.24 16 40 H 0.14 1.55 7.18 -52.48 -0.38 1.17 16 41 H 0.16 2.89 5.89 -52.49 -0.31 2.58 16 42 H 0.40 4.56 7.41 -40.82 -0.30 4.26 16 43 H 0.39 6.49 8.56 -40.82 -0.35 6.14 16 44 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.01 0.36 8.14 -51.92 -0.42 -0.06 16 46 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 47 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 377.07 15.07 5.68 5.68 Total: -1.00 -31.50 377.07 -10.14 -41.64 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -6.93 Total: 10.46 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: -2.92 Total: 6.01 kcal Atomic # 7 Polarization: -60.84 SS G_CDS: -0.64 Total: -61.48 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.31 Total: -17.50 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.50 -10.14 -41.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119449607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.604 kcal (2) G-P(sol) polarization free energy of solvation -31.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds