Wall clock time and date at job start Tue Mar 31 2020 18:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38168 * 119.55655 * 2 1 4 4 C 1.39800 * 119.00357 * 179.97438 * 3 2 1 5 5 C 1.48151 * 120.92209 * 179.97438 * 4 3 2 6 6 O 1.21516 * 119.99933 * 0.02562 * 5 4 3 7 7 N 1.34779 * 119.99840 * 180.02562 * 5 4 3 8 8 C 1.46496 * 119.99935 * 180.02562 * 7 5 4 9 9 C 1.53004 * 109.47135 * 180.02562 * 8 7 5 10 10 H 1.09000 * 109.47238 * 54.99999 * 9 8 7 11 11 C 1.53004 * 109.46724 * 294.99768 * 9 8 7 12 12 C 1.52998 * 109.46819 * 174.99960 * 9 8 7 13 13 N 1.46907 * 109.46547 * 184.99871 * 12 9 8 14 14 C 1.46897 * 110.99638 * 180.02562 * 13 12 9 15 15 C 1.50703 * 109.46979 * 180.02562 * 14 13 12 16 16 O 1.21286 * 120.00121 * 359.97438 * 15 14 13 17 17 N 1.34784 * 119.99940 * 179.97438 * 15 14 13 18 18 C 1.37092 * 119.99625 * 179.97438 * 17 15 14 19 19 H 1.07996 * 120.00624 * 359.97438 * 18 17 15 20 20 C 1.38956 * 119.99737 * 180.02562 * 18 17 15 21 21 N 1.31412 * 119.99940 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00012 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47054 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46997 * 119.99713 * 22 20 18 25 25 H 1.48498 * 109.47244 * 239.99903 * 22 20 18 26 26 C 1.39830 * 118.15189 * 0.02562 * 4 3 2 27 27 C 1.38123 * 119.00782 * 359.97438 * 26 4 3 28 28 N 1.31800 * 119.54958 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.46935 * 270.00313 * 1 2 3 30 30 H 1.09000 * 109.46618 * 29.99542 * 1 2 3 31 31 H 1.08994 * 109.47240 * 150.00133 * 1 2 3 32 32 H 1.08002 * 120.50091 * 0.02562 * 3 2 1 33 33 H 0.96999 * 119.99582 * 0.02562 * 7 5 4 34 34 H 1.08997 * 109.47077 * 299.99680 * 8 7 5 35 35 H 1.08998 * 109.47386 * 59.99665 * 8 7 5 36 36 H 1.08992 * 109.47117 * 300.00067 * 11 9 8 37 37 H 1.08996 * 109.47174 * 60.00239 * 11 9 8 38 38 H 1.09003 * 109.46476 * 180.02562 * 11 9 8 39 39 H 1.08995 * 109.47343 * 304.99175 * 12 9 8 40 40 H 1.09001 * 109.47073 * 65.00123 * 12 9 8 41 41 H 1.00897 * 111.00060 * 303.95308 * 13 12 9 42 42 H 1.09007 * 109.47289 * 299.99628 * 14 13 12 43 43 H 1.09002 * 109.47744 * 59.99893 * 14 13 12 44 44 H 0.96996 * 119.99952 * 0.02562 * 17 15 14 45 45 H 0.96995 * 119.99731 * 180.02562 * 21 20 18 46 46 H 1.08004 * 120.49788 * 180.02562 * 26 4 3 47 47 H 1.08005 * 119.55485 * 180.02562 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2019 0.0000 4 6 3.5865 1.1884 0.0005 5 6 4.3600 2.4519 0.0000 6 8 3.7797 3.5196 -0.0005 7 7 5.7074 2.4172 0.0000 8 6 6.4723 3.6666 0.0000 9 6 7.9688 3.3483 -0.0006 10 1 8.2013 2.6964 -0.8426 11 6 8.3413 2.6457 1.3065 12 6 8.7665 4.6479 -0.1263 13 7 10.1967 4.3348 -0.2473 14 6 10.9955 5.5614 -0.3696 15 6 12.4537 5.2011 -0.4920 16 8 12.7940 4.0370 -0.4781 17 7 13.3798 6.1725 -0.6168 18 6 14.7063 5.8446 -0.7276 19 1 15.0094 4.8082 -0.7144 20 6 15.6611 6.8461 -0.8558 21 7 15.2924 8.1073 -0.8713 22 14 17.4687 6.3995 -1.0060 23 1 17.6190 4.9227 -0.9624 24 1 17.9999 6.9127 -2.2943 25 1 18.2240 7.0079 0.1185 26 6 4.2343 -0.0508 0.0005 27 6 3.4741 -1.2040 0.0005 28 7 2.1570 -1.1466 0.0005 29 1 -0.3633 0.0001 1.0277 30 1 -0.3632 0.8900 -0.5138 31 1 -0.3633 -0.8899 -0.5138 32 1 1.6495 2.1377 0.0004 33 1 6.1705 1.5649 0.0000 34 1 6.2238 4.2447 -0.8899 35 1 6.2237 4.2448 0.8900 36 1 8.1088 3.2976 2.1485 37 1 7.7730 1.7199 1.3961 38 1 9.4076 2.4194 1.3063 39 1 8.4376 5.1919 -1.0117 40 1 8.6026 5.2619 0.7593 41 1 10.5113 3.7748 0.5309 42 1 10.6821 6.1123 -1.2565 43 1 10.8471 6.1815 0.5145 44 1 13.1077 7.1034 -0.6275 45 1 15.9588 8.8063 -0.9611 46 1 5.3129 -0.1054 0.0013 47 1 3.9653 -2.1659 0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753633158.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:25 Heat of formation + Delta-G solvation = -47.334869 kcal Electronic energy + Delta-G solvation = -26748.553264 eV Core-core repulsion = 22737.765598 eV Total energy + Delta-G solvation = -4010.787666 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.12010 -39.63617 -38.42217 -37.32968 -35.09191 -33.98853 -33.67180 -32.90167 -32.15866 -31.20498 -28.16850 -27.47329 -27.31720 -25.31229 -24.26497 -23.32808 -22.93026 -20.96196 -20.34093 -19.26974 -18.30803 -17.88596 -17.26299 -16.47601 -16.20472 -15.95291 -15.83176 -15.56949 -15.41901 -15.00503 -14.65122 -14.48168 -14.32307 -14.21230 -13.76478 -13.74480 -13.44488 -13.04757 -13.00454 -12.80900 -12.74797 -12.69506 -12.21146 -12.09998 -11.62477 -11.56792 -11.28435 -11.12217 -11.04055 -10.97034 -10.67081 -10.38490 -10.35788 -10.24131 -9.97226 -9.53824 -9.50597 -9.48506 -8.49338 -8.10158 -7.97859 -6.43483 -3.84341 0.21728 0.55382 2.44710 2.60732 3.15037 3.25765 3.32782 3.32880 3.74877 3.88746 4.02143 4.07845 4.17617 4.26233 4.41769 4.51894 4.63133 4.66686 4.78835 4.88001 4.98898 5.09949 5.11471 5.20101 5.23449 5.27718 5.35128 5.37387 5.43619 5.52191 5.53680 5.56684 5.64510 5.75450 5.78905 5.91342 5.95856 6.03309 6.09162 6.12409 6.24740 6.99643 7.16066 7.41520 7.53767 7.61594 7.70011 8.04697 8.59336 9.16162 9.52517 10.03690 10.74305 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.039182 B = 0.001440 C = 0.001402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.440816 B =19436.963394 C =19967.319000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.125 3.875 3 C -0.116 4.116 4 C -0.082 4.082 5 C 0.556 3.444 6 O -0.529 6.529 7 N -0.717 5.717 8 C 0.124 3.876 9 C -0.102 4.102 10 H 0.090 0.910 11 C -0.153 4.153 12 C 0.066 3.934 13 N -0.668 5.668 14 C 0.050 3.950 15 C 0.440 3.560 16 O -0.584 6.584 17 N -0.563 5.563 18 C -0.300 4.300 19 H 0.104 0.896 20 C 0.022 3.978 21 N -0.901 5.901 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.282 1.282 26 C -0.150 4.150 27 C 0.103 3.897 28 N -0.471 5.471 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.148 0.852 33 H 0.402 0.598 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.031 0.969 41 H 0.349 0.651 42 H 0.086 0.914 43 H 0.044 0.956 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.140 0.860 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.752 -12.968 3.409 29.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.013 4.013 3 C -0.137 4.137 4 C -0.093 4.093 5 C 0.342 3.658 6 O -0.405 6.405 7 N -0.369 5.369 8 C 0.000 4.000 9 C -0.121 4.121 10 H 0.108 0.892 11 C -0.211 4.211 12 C -0.064 4.064 13 N -0.302 5.302 14 C -0.083 4.083 15 C 0.226 3.774 16 O -0.468 6.468 17 N -0.200 5.200 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.208 1.208 26 C -0.171 4.171 27 C -0.054 4.054 28 N -0.182 5.182 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.166 0.834 33 H 0.238 0.762 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.049 0.951 41 H 0.169 0.831 42 H 0.105 0.895 43 H 0.062 0.938 44 H 0.226 0.774 45 H 0.081 0.919 46 H 0.158 0.842 47 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -27.282 -13.648 2.726 30.627 hybrid contribution 1.623 1.236 0.800 2.191 sum -25.660 -12.412 3.526 28.721 Atomic orbital electron populations 1.20758 0.88151 1.03889 1.03483 1.21357 0.97448 0.87752 0.94697 1.22142 0.93261 1.00207 0.98051 1.20381 0.94562 0.93502 1.00877 1.18167 0.82255 0.88449 0.76913 1.90798 1.69884 1.30763 1.49082 1.45904 1.05756 1.10581 1.74671 1.21470 0.90166 0.85419 1.02907 1.21379 0.92345 0.98555 0.99861 0.89162 1.21914 1.02533 1.00071 0.96556 1.21876 0.88789 0.95115 1.00637 1.60100 1.00764 1.18592 1.50694 1.21676 0.93517 0.91788 1.01284 1.19807 0.86577 0.86481 0.84556 1.90515 1.81510 1.18993 1.55824 1.41871 1.06378 1.08059 1.63692 1.19758 0.81289 0.94985 1.46897 0.87854 1.25267 1.00623 0.94722 0.97314 1.69619 1.35156 0.99143 1.50343 0.85801 0.81900 0.78897 0.77751 1.19206 1.20730 1.20768 1.22347 1.01600 0.92663 1.00457 1.22767 0.89133 0.98528 0.94924 1.67426 1.10329 1.29511 1.10916 0.90045 0.90312 0.90131 0.83416 0.76217 0.90799 0.90981 0.92540 0.92841 0.91244 0.90690 0.95102 0.83063 0.89537 0.93828 0.77446 0.91908 0.84235 0.81869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.52 10.17 36.01 0.37 -0.16 16 2 C 0.13 0.97 6.78 -82.63 -0.56 0.41 16 3 C -0.12 -0.96 9.31 -39.02 -0.36 -1.32 16 4 C -0.08 -0.69 5.91 -104.65 -0.62 -1.31 16 5 C 0.56 5.56 7.80 -12.19 -0.10 5.47 16 6 O -0.53 -7.13 16.45 5.35 0.09 -7.04 16 7 N -0.72 -5.63 5.24 -61.15 -0.32 -5.95 16 8 C 0.12 1.07 5.06 -4.04 -0.02 1.05 16 9 C -0.10 -0.91 2.63 -90.62 -0.24 -1.15 16 10 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 11 C -0.15 -1.28 8.84 37.16 0.33 -0.95 16 12 C 0.07 0.74 5.14 -3.82 -0.02 0.72 16 13 N -0.67 -10.17 6.12 -115.05 -0.70 -10.88 16 14 C 0.05 0.86 6.17 -4.98 -0.03 0.83 16 15 C 0.44 10.27 7.82 -10.98 -0.09 10.19 16 16 O -0.58 -15.66 15.78 5.55 0.09 -15.57 16 17 N -0.56 -14.18 5.29 -10.96 -0.06 -14.24 16 18 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 19 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.41 13.05 55.50 0.72 -23.68 16 22 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 C -0.15 -0.93 9.62 -39.03 -0.38 -1.31 16 27 C 0.10 0.68 11.17 -17.59 -0.20 0.48 16 28 N -0.47 -3.99 10.25 -9.52 -0.10 -4.09 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.28 8.08 -51.93 -0.42 -0.14 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.15 1.15 7.74 -52.49 -0.41 0.74 16 33 H 0.40 2.22 5.80 -40.82 -0.24 1.98 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.05 0.35 7.18 -51.93 -0.37 -0.02 16 38 H 0.07 0.68 6.68 -51.93 -0.35 0.33 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.35 5.44 6.68 -39.29 -0.26 5.18 16 42 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 43 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 45 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 46 H 0.14 0.48 6.54 -52.48 -0.34 0.14 16 47 H 0.16 0.61 8.06 -52.48 -0.42 0.18 16 LS Contribution 396.18 15.07 5.97 5.97 Total: -1.00 -34.44 396.18 -8.36 -42.79 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -6.87 Total: 11.81 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: -2.15 Total: 4.98 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: -0.46 Total: -58.83 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: 0.18 Total: -22.61 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.44 -8.36 -42.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753633158.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.543 kcal (2) G-P(sol) polarization free energy of solvation -34.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds