Wall clock time and date at job start Tue Mar 31 2020 18:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38168 * 119.55637 * 2 1 4 4 C 1.39800 * 119.00357 * 180.02562 * 3 2 1 5 5 C 1.48150 * 120.92208 * 180.02562 * 4 3 2 6 6 O 1.21516 * 119.99934 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99803 * 179.97438 * 5 4 3 8 8 C 1.46494 * 119.99899 * 180.02562 * 7 5 4 9 9 C 1.53003 * 109.47100 * 180.02562 * 8 7 5 10 10 H 1.08998 * 109.46759 * 304.99307 * 9 8 7 11 11 C 1.52998 * 109.47246 * 64.99881 * 9 8 7 12 12 C 1.53000 * 109.46920 * 184.99671 * 9 8 7 13 13 N 1.46906 * 109.47071 * 174.99707 * 12 9 8 14 14 C 1.46892 * 111.00038 * 180.02562 * 13 12 9 15 15 C 1.50700 * 109.47281 * 180.02562 * 14 13 12 16 16 O 1.21295 * 119.99509 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00317 * 180.02562 * 15 14 13 18 18 C 1.37102 * 120.00191 * 179.97438 * 17 15 14 19 19 H 1.08008 * 119.99595 * 0.02562 * 18 17 15 20 20 C 1.38945 * 120.00081 * 179.97438 * 18 17 15 21 21 N 1.31410 * 120.00164 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99967 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47208 * 60.00085 * 22 20 18 24 24 H 1.48500 * 109.47181 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46964 * 300.00235 * 22 20 18 26 26 C 1.39830 * 118.15189 * 0.02562 * 4 3 2 27 27 C 1.38123 * 119.00782 * 359.97438 * 26 4 3 28 28 N 1.31800 * 119.54975 * 180.02562 * 2 1 3 29 29 H 1.09005 * 109.46753 * 269.98217 * 1 2 3 30 30 H 1.09004 * 109.46919 * 29.97616 * 1 2 3 31 31 H 1.08996 * 109.47529 * 149.97929 * 1 2 3 32 32 H 1.08002 * 120.50091 * 0.04279 * 3 2 1 33 33 H 0.96999 * 119.99612 * 359.97438 * 7 5 4 34 34 H 1.09002 * 109.47151 * 299.99527 * 8 7 5 35 35 H 1.09006 * 109.47571 * 59.99526 * 8 7 5 36 36 H 1.08993 * 109.47186 * 59.99532 * 11 9 8 37 37 H 1.08994 * 109.47363 * 180.02562 * 11 9 8 38 38 H 1.09005 * 109.46895 * 299.99775 * 11 9 8 39 39 H 1.08999 * 109.47631 * 295.00014 * 12 9 8 40 40 H 1.09007 * 109.47195 * 54.99899 * 12 9 8 41 41 H 1.00898 * 110.99572 * 56.04419 * 13 12 9 42 42 H 1.09001 * 109.47347 * 300.00005 * 14 13 12 43 43 H 1.09001 * 109.47301 * 60.00090 * 14 13 12 44 44 H 0.97004 * 119.99877 * 359.97438 * 17 15 14 45 45 H 0.96998 * 120.00441 * 179.97438 * 21 20 18 46 46 H 1.08004 * 120.49788 * 180.02562 * 26 4 3 47 47 H 1.08005 * 119.55485 * 180.02562 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2019 0.0000 4 6 3.5865 1.1884 -0.0005 5 6 4.3600 2.4519 0.0000 6 8 3.7797 3.5196 0.0005 7 7 5.7073 2.4172 0.0000 8 6 6.4722 3.6666 0.0011 9 6 7.9688 3.3483 0.0002 10 1 8.2019 2.6954 0.8412 11 6 8.3404 2.6474 -1.3081 12 6 8.7665 4.6477 0.1270 13 7 10.1968 4.3345 0.2466 14 6 10.9957 5.5610 0.3711 15 6 12.4541 5.2006 0.4907 16 8 12.7944 4.0365 0.4743 17 7 13.3801 6.1717 0.6169 18 6 14.7068 5.8438 0.7263 19 1 15.0099 4.8072 0.7109 20 6 15.6615 6.8450 0.8559 21 7 15.2927 8.1061 0.8741 22 14 17.4692 6.3982 1.0041 23 1 17.8953 5.6507 -0.2062 24 1 18.2767 7.6380 1.1307 25 1 17.6726 5.5507 2.2065 26 6 4.2343 -0.0508 -0.0016 27 6 3.4741 -1.2040 -0.0016 28 7 2.1570 -1.1466 -0.0005 29 1 -0.3633 -0.0003 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8897 -0.5141 32 1 1.6495 2.1377 0.0007 33 1 6.1705 1.5649 0.0000 34 1 6.2238 4.2455 -0.8884 35 1 6.2237 4.2441 0.8916 36 1 8.1072 3.3004 -2.1490 37 1 9.4064 2.4203 -1.3085 38 1 7.7720 1.7217 -1.3984 39 1 8.6021 5.2630 -0.7576 40 1 8.4382 5.1907 1.0133 41 1 10.5109 3.7755 -0.5325 42 1 10.8467 6.1828 -0.5116 43 1 10.6827 6.1099 1.2593 44 1 13.1078 7.1026 0.6304 45 1 15.9591 8.8051 0.9649 46 1 5.3129 -0.1054 -0.0017 47 1 3.9653 -2.1659 -0.0020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753633159.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:29 Heat of formation + Delta-G solvation = -47.259032 kcal Electronic energy + Delta-G solvation = -26748.252081 eV Core-core repulsion = 22737.467703 eV Total energy + Delta-G solvation = -4010.784377 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.11975 -39.63567 -38.41844 -37.32766 -35.09057 -33.98624 -33.67018 -32.90127 -32.15764 -31.20419 -28.16804 -27.47148 -27.31602 -25.31030 -24.26306 -23.32759 -22.92860 -20.96166 -20.33982 -19.26704 -18.30722 -17.88386 -17.26258 -16.47429 -16.20198 -15.95651 -15.83012 -15.56740 -15.41703 -15.00008 -14.64801 -14.48419 -14.32639 -14.21356 -13.76765 -13.73591 -13.44715 -13.04606 -13.00335 -12.79865 -12.74962 -12.69867 -12.20978 -12.09546 -11.62149 -11.56291 -11.28317 -11.09734 -11.03282 -10.95872 -10.67031 -10.45468 -10.38454 -10.22807 -9.97194 -9.51573 -9.50554 -9.48446 -8.49092 -8.09884 -7.97667 -6.43024 -3.84107 0.21764 0.55414 2.44752 2.60790 3.18986 3.24904 3.29136 3.32826 3.74893 3.88983 4.02270 4.07970 4.17644 4.26289 4.41806 4.51920 4.63224 4.66751 4.78933 4.88055 4.98862 5.10160 5.11615 5.20130 5.23665 5.27851 5.35216 5.37393 5.43687 5.52279 5.53717 5.56718 5.64572 5.75572 5.78988 5.91442 5.96107 6.03440 6.09207 6.12475 6.24903 6.99695 7.16289 7.41549 7.53511 7.61845 7.70059 8.04466 8.59589 9.16162 9.52619 10.03938 10.74577 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.039178 B = 0.001440 C = 0.001402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.511217 B =19436.892775 C =19967.173725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.125 3.875 3 C -0.116 4.116 4 C -0.082 4.082 5 C 0.556 3.444 6 O -0.529 6.529 7 N -0.717 5.717 8 C 0.124 3.876 9 C -0.102 4.102 10 H 0.090 0.910 11 C -0.153 4.153 12 C 0.066 3.934 13 N -0.668 5.668 14 C 0.050 3.950 15 C 0.440 3.560 16 O -0.585 6.585 17 N -0.563 5.563 18 C -0.301 4.301 19 H 0.103 0.897 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.931 3.069 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.273 1.273 26 C -0.150 4.150 27 C 0.103 3.897 28 N -0.471 5.471 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.148 0.852 33 H 0.402 0.598 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.056 0.944 37 H 0.069 0.931 38 H 0.052 0.948 39 H 0.031 0.969 40 H 0.075 0.925 41 H 0.349 0.651 42 H 0.044 0.956 43 H 0.086 0.914 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.140 0.860 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.725 -12.912 -3.373 29.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.013 4.013 3 C -0.137 4.137 4 C -0.093 4.093 5 C 0.342 3.658 6 O -0.405 6.405 7 N -0.369 5.369 8 C 0.000 4.000 9 C -0.121 4.121 10 H 0.108 0.892 11 C -0.211 4.211 12 C -0.064 4.064 13 N -0.302 5.302 14 C -0.082 4.082 15 C 0.225 3.775 16 O -0.469 6.469 17 N -0.199 5.199 18 C -0.431 4.431 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.171 4.171 27 C -0.054 4.054 28 N -0.182 5.182 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.166 0.834 33 H 0.238 0.762 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.049 0.951 40 H 0.093 0.907 41 H 0.169 0.831 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.226 0.774 45 H 0.082 0.918 46 H 0.158 0.842 47 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -27.252 -13.580 -2.694 30.567 hybrid contribution 1.622 1.208 -0.776 2.166 sum -25.630 -12.372 -3.470 28.671 Atomic orbital electron populations 1.20759 0.88151 1.03869 1.03503 1.21357 0.97448 0.87752 0.94697 1.22142 0.93261 1.00207 0.98052 1.20380 0.94562 0.93502 1.00876 1.18166 0.82256 0.88449 0.76913 1.90798 1.69883 1.30763 1.49082 1.45904 1.05755 1.10581 1.74670 1.21471 0.90166 0.85419 1.02906 1.21377 0.92345 0.98564 0.99851 0.89167 1.21912 1.02536 1.00076 0.96546 1.21876 0.88786 0.95109 1.00641 1.60082 1.00767 1.18688 1.50634 1.21670 0.93511 0.91772 1.01283 1.19804 0.86577 0.86482 0.84597 1.90516 1.81521 1.18987 1.55870 1.41858 1.06346 1.08068 1.63653 1.19661 0.81313 0.94939 1.47165 0.87967 1.25258 1.00615 0.94716 0.97264 1.69601 1.35371 0.99143 1.50155 0.85916 0.81615 0.77587 0.79083 1.19918 1.20961 1.19874 1.22347 1.01600 0.92663 1.00457 1.22767 0.89133 0.98527 0.94924 1.67426 1.10329 1.29511 1.10917 0.90026 0.90322 0.90139 0.83416 0.76217 0.90986 0.90794 0.92535 0.91244 0.92848 0.95105 0.90695 0.83053 0.93844 0.89537 0.77438 0.91799 0.84235 0.81870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.52 10.17 36.00 0.37 -0.16 16 2 C 0.13 0.97 6.78 -82.63 -0.56 0.41 16 3 C -0.12 -0.96 9.31 -39.02 -0.36 -1.32 16 4 C -0.08 -0.69 5.91 -104.65 -0.62 -1.31 16 5 C 0.56 5.57 7.80 -12.19 -0.10 5.47 16 6 O -0.53 -7.13 16.45 5.35 0.09 -7.04 16 7 N -0.72 -5.63 5.24 -61.15 -0.32 -5.95 16 8 C 0.12 1.07 5.06 -4.04 -0.02 1.05 16 9 C -0.10 -0.91 2.63 -90.62 -0.24 -1.15 16 10 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 11 C -0.15 -1.28 8.84 37.16 0.33 -0.95 16 12 C 0.07 0.74 5.14 -3.82 -0.02 0.72 16 13 N -0.67 -10.19 6.12 -115.06 -0.70 -10.89 16 14 C 0.05 0.87 6.17 -4.98 -0.03 0.84 16 15 C 0.44 10.27 7.82 -10.99 -0.09 10.19 16 16 O -0.58 -15.68 15.78 5.54 0.09 -15.59 16 17 N -0.56 -14.17 5.29 -10.96 -0.06 -14.23 16 18 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 19 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 20 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 21 N -0.90 -24.40 13.05 55.50 0.72 -23.68 16 22 Si 0.93 20.92 29.55 -169.99 -5.02 15.90 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 26 C -0.15 -0.93 9.62 -39.03 -0.38 -1.31 16 27 C 0.10 0.68 11.17 -17.59 -0.20 0.48 16 28 N -0.47 -3.99 10.25 -9.52 -0.10 -4.09 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.28 8.08 -51.93 -0.42 -0.14 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.15 1.15 7.74 -52.49 -0.41 0.74 16 33 H 0.40 2.22 5.80 -40.82 -0.24 1.98 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.68 6.68 -51.93 -0.35 0.33 16 38 H 0.05 0.35 7.18 -51.93 -0.37 -0.02 16 39 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.35 5.45 6.68 -39.29 -0.26 5.19 16 42 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 44 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 45 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 46 H 0.14 0.48 6.54 -52.48 -0.34 0.14 16 47 H 0.16 0.61 8.06 -52.48 -0.42 0.18 16 LS Contribution 396.18 15.07 5.97 5.97 Total: -1.00 -34.38 396.18 -8.36 -42.74 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -6.87 Total: 11.89 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: -2.15 Total: 4.97 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: -0.46 Total: -58.84 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: 0.18 Total: -22.63 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.38 -8.36 -42.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753633159.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.519 kcal (2) G-P(sol) polarization free energy of solvation -34.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds