Wall clock time and date at job start Tue Mar 31 2020 18:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38601 * 119.54690 * 2 1 4 4 C 1.38592 * 119.34990 * 179.97438 * 3 2 1 5 5 C 1.38633 * 118.48563 * 359.97438 * 4 3 2 6 6 C 1.39269 * 119.06272 * 0.02562 * 5 4 3 7 7 C 1.48170 * 119.72125 * 179.97438 * 6 5 4 8 8 O 1.21514 * 119.99950 * 6.41966 * 7 6 5 9 9 N 1.34773 * 119.99751 * 186.41669 * 7 6 5 10 10 C 1.46497 * 120.00270 * 5.61091 * 9 7 6 11 11 C 1.46502 * 119.99895 * 185.61198 * 9 7 6 12 12 H 1.09001 * 109.46802 * 359.97438 * 11 9 7 13 13 C 1.53000 * 109.46993 * 240.00375 * 11 9 7 14 14 C 1.53002 * 109.47278 * 119.99801 * 11 9 7 15 15 N 1.46892 * 109.47056 * 305.00067 * 14 11 9 16 16 C 1.46907 * 110.99864 * 179.97438 * 15 14 11 17 17 C 1.50699 * 109.47288 * 179.97438 * 16 15 14 18 18 O 1.21296 * 119.99627 * 0.02562 * 17 16 15 19 19 N 1.34769 * 120.00327 * 180.02562 * 17 16 15 20 20 C 1.37093 * 120.00368 * 180.02562 * 19 17 16 21 21 H 1.07994 * 120.00119 * 359.97438 * 20 19 17 22 22 C 1.38957 * 120.00270 * 179.97438 * 20 19 17 23 23 N 1.31412 * 119.99883 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00152 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46813 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47012 * 120.00008 * 24 22 20 27 27 H 1.48498 * 109.47000 * 240.00248 * 24 22 20 28 28 N 1.31493 * 119.55141 * 180.24645 * 2 1 3 29 29 H 1.09003 * 109.46994 * 89.99919 * 1 2 3 30 30 H 1.09002 * 109.47007 * 210.00199 * 1 2 3 31 31 H 1.09001 * 109.47004 * 330.00110 * 1 2 3 32 32 H 1.07997 * 120.32470 * 359.95371 * 3 2 1 33 33 H 1.07996 * 120.75267 * 179.97438 * 4 3 2 34 34 H 1.08000 * 120.46411 * 180.02562 * 5 4 3 35 35 H 1.09000 * 109.47399 * 275.41699 * 10 9 7 36 36 H 1.09004 * 109.47236 * 35.41468 * 10 9 7 37 37 H 1.09004 * 109.47325 * 155.41555 * 10 9 7 38 38 H 1.09001 * 109.46961 * 299.99431 * 13 11 9 39 39 H 1.08994 * 109.47513 * 59.99788 * 13 11 9 40 40 H 1.08997 * 109.46808 * 180.02562 * 13 11 9 41 41 H 1.09004 * 109.47044 * 184.99881 * 14 11 9 42 42 H 1.09000 * 109.46816 * 64.99990 * 14 11 9 43 43 H 1.00898 * 111.00574 * 303.95049 * 15 14 11 44 44 H 1.08999 * 109.47271 * 300.00381 * 16 15 14 45 45 H 1.09002 * 109.46436 * 60.00231 * 16 15 14 46 46 H 0.97003 * 119.99838 * 359.97438 * 19 17 16 47 47 H 0.96999 * 120.00156 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.2058 0.0000 4 6 3.5764 1.2010 0.0005 5 6 4.2334 -0.0198 0.0016 6 6 3.4821 -1.1924 0.0016 7 6 4.1692 -2.5051 0.0021 8 8 5.3775 -2.5584 0.1203 9 7 3.4542 -3.6400 -0.1284 10 6 2.0150 -3.5727 -0.3937 11 6 4.1161 -4.9411 -0.0049 12 1 5.1780 -4.7914 0.1902 13 6 3.9430 -5.7269 -1.3062 14 6 3.4901 -5.7242 1.1510 15 7 3.5496 -4.9180 2.3775 16 6 2.9556 -5.6395 3.5110 17 6 3.0352 -4.7834 4.7486 18 8 3.5369 -3.6805 4.6919 19 7 2.5489 -5.2431 5.9184 20 6 2.6208 -4.4641 7.0442 21 1 3.0675 -3.4822 6.9938 22 6 2.1189 -4.9380 8.2503 23 7 1.5758 -6.1330 8.3118 24 14 2.2175 -3.8768 9.7844 25 1 2.8697 -2.5849 9.4515 26 1 0.8480 -3.6214 10.2985 27 1 3.0128 -4.5803 10.8226 28 7 2.1556 -1.1439 -0.0049 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6484 2.1398 -0.0008 33 1 4.1318 2.1272 0.0001 34 1 5.3127 -0.0608 0.0025 35 1 1.4770 -3.4579 0.5473 36 1 1.8040 -2.7200 -1.0391 37 1 1.6931 -4.4900 -0.8867 38 1 2.8812 -5.8766 -1.5017 39 1 4.3890 -5.1691 -2.1296 40 1 4.4351 -6.6951 -1.2141 41 1 4.0399 -6.6536 1.3000 42 1 2.4504 -5.9508 0.9152 43 1 4.4978 -4.6403 2.5821 44 1 1.9121 -5.8653 3.2913 45 1 3.5013 -6.5684 3.6765 46 1 2.1473 -6.1250 5.9637 47 1 1.2258 -6.4639 9.1537 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753678960.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:33 Heat of formation + Delta-G solvation = -17.734973 kcal Electronic energy + Delta-G solvation = -28974.159728 eV Core-core repulsion = 24964.655610 eV Total energy + Delta-G solvation = -4009.504118 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.82673 -39.27641 -38.19421 -36.74544 -34.65775 -33.76651 -33.11402 -32.83489 -31.24144 -31.03150 -27.88039 -27.53809 -26.75493 -25.14526 -24.66000 -23.14580 -22.45784 -21.27039 -19.54058 -19.03190 -17.83488 -17.61702 -16.80885 -16.32929 -15.95806 -15.81084 -15.55896 -15.13354 -14.62179 -14.52362 -14.34283 -14.12599 -13.84717 -13.72416 -13.47665 -13.37710 -13.19688 -12.79088 -12.57892 -12.50498 -12.35903 -12.29848 -12.16029 -11.89164 -11.78839 -11.64396 -11.44296 -11.37868 -11.02491 -10.83735 -10.31729 -10.18761 -10.14067 -10.00569 -9.47830 -9.24942 -9.08609 -8.50384 -8.32714 -7.96741 -7.90192 -6.38025 -3.78360 0.61537 1.10061 2.78818 3.03632 3.18716 3.28749 3.36647 3.76901 3.96668 4.00081 4.13310 4.34772 4.51332 4.62063 4.84882 4.88308 4.95917 5.07115 5.15299 5.23041 5.26276 5.30938 5.33098 5.39422 5.42449 5.45652 5.51482 5.62312 5.65536 5.83135 5.84186 5.86670 5.90621 5.97086 6.00314 6.03488 6.09113 6.25320 6.32056 6.48642 6.70498 7.29626 7.45709 7.59098 7.70059 7.73760 8.11209 8.27647 8.66384 9.22555 9.59257 10.11588 10.80023 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010253 B = 0.003150 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2730.382949 B = 8886.047208 C =10463.083128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.120 3.880 3 C -0.154 4.154 4 C -0.080 4.080 5 C -0.120 4.120 6 C 0.094 3.906 7 C 0.578 3.422 8 O -0.542 6.542 9 N -0.572 5.572 10 C 0.093 3.907 11 C 0.136 3.864 12 H 0.100 0.900 13 C -0.158 4.158 14 C 0.049 3.951 15 N -0.662 5.662 16 C 0.053 3.947 17 C 0.442 3.558 18 O -0.580 6.580 19 N -0.566 5.566 20 C -0.297 4.297 21 H 0.102 0.898 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.928 3.072 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 N -0.445 5.445 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.146 0.854 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.053 0.947 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.037 0.963 42 H 0.074 0.926 43 H 0.349 0.651 44 H 0.084 0.916 45 H 0.041 0.959 46 H 0.392 0.608 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.751 6.368 -22.156 23.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.020 4.020 3 C -0.174 4.174 4 C -0.106 4.106 5 C -0.141 4.141 6 C -0.044 4.044 7 C 0.365 3.635 8 O -0.419 6.419 9 N -0.302 5.302 10 C -0.050 4.050 11 C 0.032 3.968 12 H 0.118 0.882 13 C -0.216 4.216 14 C -0.081 4.081 15 N -0.295 5.295 16 C -0.080 4.080 17 C 0.227 3.773 18 O -0.464 6.464 19 N -0.203 5.203 20 C -0.426 4.426 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.756 3.244 25 H -0.193 1.193 26 H -0.208 1.208 27 H -0.208 1.208 28 N -0.158 5.158 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.155 0.845 33 H 0.158 0.842 34 H 0.164 0.836 35 H 0.085 0.915 36 H 0.104 0.896 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.055 0.945 42 H 0.092 0.908 43 H 0.169 0.831 44 H 0.102 0.898 45 H 0.059 0.941 46 H 0.225 0.775 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.884 6.514 -22.105 23.121 hybrid contribution 0.751 -0.004 1.260 1.467 sum -1.133 6.509 -20.845 21.867 Atomic orbital electron populations 1.20726 0.88378 1.04016 1.02956 1.21438 0.97299 0.88219 0.95005 1.22160 0.95024 0.99408 1.00784 1.21587 0.94446 0.98230 0.96299 1.22085 1.02221 0.91866 0.97888 1.21094 0.89704 0.94137 0.99498 1.17775 0.86074 0.83158 0.76540 1.90745 1.13452 1.86630 1.51066 1.47364 1.09677 1.04608 1.68556 1.22038 0.79434 1.01264 1.02220 1.21153 0.98797 0.82487 0.94362 0.88239 1.22089 1.02465 1.00187 0.96900 1.22349 1.01110 0.94172 0.90496 1.59993 1.26767 1.41202 1.01522 1.21655 1.00474 0.94880 0.91005 1.19837 0.84655 0.88427 0.84333 1.90542 1.48972 1.21597 1.85244 1.41860 1.53093 1.18109 1.07235 1.19746 1.36612 1.00542 0.85723 0.87981 1.25244 0.96891 0.96523 0.99332 1.69621 1.40213 1.17148 1.27507 0.85814 0.77875 0.79866 0.80883 1.19260 1.20764 1.20777 1.67931 1.08471 1.28715 1.10724 0.90449 0.90002 0.90611 0.84546 0.84227 0.83635 0.91544 0.89622 0.92844 0.91999 0.92075 0.91306 0.94452 0.90765 0.83125 0.89771 0.94062 0.77525 0.92000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.82 10.17 36.01 0.37 -0.46 16 2 C 0.12 1.32 6.78 -82.60 -0.56 0.76 16 3 C -0.15 -1.45 9.75 -39.32 -0.38 -1.84 16 4 C -0.08 -0.79 10.17 -39.31 -0.40 -1.19 16 5 C -0.12 -1.53 9.63 -39.05 -0.38 -1.91 16 6 C 0.09 1.38 6.57 -83.01 -0.55 0.84 16 7 C 0.58 9.35 7.65 -12.18 -0.09 9.26 16 8 O -0.54 -10.01 15.69 5.35 0.08 -9.93 16 9 N -0.57 -7.92 2.48 -174.92 -0.43 -8.35 16 10 C 0.09 1.11 8.24 59.85 0.49 1.60 16 11 C 0.14 1.69 2.87 -67.93 -0.20 1.49 16 12 H 0.10 1.41 6.91 -51.93 -0.36 1.05 16 13 C -0.16 -1.44 9.18 37.16 0.34 -1.10 16 14 C 0.05 0.64 4.98 -3.83 -0.02 0.62 16 15 N -0.66 -11.57 5.85 -115.06 -0.67 -12.25 16 16 C 0.05 0.97 6.17 -4.97 -0.03 0.94 16 17 C 0.44 10.92 7.82 -10.99 -0.09 10.84 16 18 O -0.58 -16.63 15.78 5.54 0.09 -16.54 16 19 N -0.57 -14.81 5.29 -10.97 -0.06 -14.87 16 20 C -0.30 -8.52 9.68 -14.93 -0.14 -8.67 16 21 H 0.10 3.10 7.16 -52.49 -0.38 2.72 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -25.04 13.05 55.50 0.72 -24.31 16 24 Si 0.93 21.53 29.55 -169.99 -5.02 16.51 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 N -0.45 -5.97 6.08 -6.06 -0.04 -6.01 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.48 8.08 -51.93 -0.42 0.06 16 32 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.15 1.79 7.66 -52.49 -0.40 1.39 16 35 H 0.07 0.93 7.99 -51.93 -0.42 0.51 16 36 H 0.09 0.99 5.78 -51.93 -0.30 0.69 16 37 H 0.05 0.51 6.44 -51.93 -0.33 0.17 16 38 H 0.06 0.50 6.67 -51.93 -0.35 0.16 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.89 7.84 -51.93 -0.41 0.49 16 43 H 0.35 6.75 8.43 -39.29 -0.33 6.42 16 44 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 45 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.39 9.77 7.90 -40.82 -0.32 9.45 16 47 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 392.51 15.07 5.91 5.91 Total: -1.00 -35.20 392.51 -8.10 -43.30 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: -6.95 Total: 14.86 kcal Atomic # 6 Polarization: 13.41 SS G_CDS: -1.73 Total: 11.68 kcal Atomic # 7 Polarization: -65.31 SS G_CDS: -0.48 Total: -65.79 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: 0.17 Total: -26.47 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.20 -8.10 -43.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753678960.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.562 kcal (2) G-P(sol) polarization free energy of solvation -35.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds