Wall clock time and date at job start Tue Mar 31 2020 17:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38671 * 120.79228 * 2 1 4 4 C 1.38181 * 119.16318 * 180.02562 * 3 2 1 5 5 N 1.31886 * 120.76668 * 0.02562 * 4 3 2 6 6 C 1.31865 * 121.72347 * 359.68705 * 5 4 3 7 7 C 1.38218 * 120.75925 * 0.58061 * 6 5 4 8 8 C 1.50701 * 120.41710 * 179.73203 * 7 6 5 9 9 C 1.50703 * 109.47355 * 264.72046 * 8 7 6 10 10 O 1.21283 * 119.99488 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00290 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99828 * 180.27728 * 11 9 8 13 13 C 1.52996 * 109.47059 * 179.72339 * 12 11 9 14 14 H 1.09002 * 109.47682 * 64.99618 * 13 12 11 15 15 C 1.53003 * 109.47530 * 184.99929 * 13 12 11 16 16 N 1.46906 * 109.47076 * 304.99500 * 13 12 11 17 17 C 1.46903 * 110.99854 * 154.99879 * 16 13 12 18 18 C 1.50706 * 109.46788 * 180.02562 * 17 16 13 19 19 O 1.21289 * 119.99769 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99565 * 180.02562 * 18 17 16 21 21 C 1.37093 * 119.99800 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00230 * 0.02562 * 21 20 18 23 23 C 1.38950 * 120.00440 * 180.02562 * 21 20 18 24 24 N 1.31414 * 119.99595 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00614 * 180.02562 * 23 21 20 26 26 H 1.48508 * 109.46803 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47533 * 119.99695 * 25 23 21 28 28 H 1.48500 * 109.47031 * 240.00136 * 25 23 21 29 29 H 1.09004 * 109.47109 * 269.98435 * 1 2 3 30 30 H 1.09001 * 109.46909 * 29.97556 * 1 2 3 31 31 H 1.08995 * 109.47624 * 149.98096 * 1 2 3 32 32 H 1.07996 * 120.42236 * 359.97438 * 3 2 1 33 33 H 1.08002 * 119.61921 * 179.97438 * 4 3 2 34 34 H 1.07999 * 119.61789 * 180.28608 * 6 5 4 35 35 H 1.08998 * 109.47477 * 144.71892 * 8 7 6 36 36 H 1.09002 * 109.47412 * 24.72151 * 8 7 6 37 37 H 0.97001 * 119.99727 * 359.97438 * 11 9 8 38 38 H 1.09004 * 109.46963 * 299.72135 * 12 11 9 39 39 H 1.08994 * 109.47567 * 59.72287 * 12 11 9 40 40 H 1.09002 * 109.46892 * 59.99206 * 15 13 12 41 41 H 1.09001 * 109.47478 * 179.97438 * 15 13 12 42 42 H 1.09000 * 109.46800 * 300.00452 * 15 13 12 43 43 H 1.00899 * 111.00368 * 278.95496 * 16 13 12 44 44 H 1.09001 * 109.47321 * 299.99877 * 17 16 13 45 45 H 1.08999 * 109.46905 * 60.00434 * 17 16 13 46 46 H 0.96997 * 120.00270 * 359.97438 * 20 18 17 47 47 H 0.97007 * 120.00346 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5981 1.1519 -0.0005 5 7 4.2403 0.0000 -0.0016 6 6 3.5982 -1.1518 0.0040 7 6 2.2166 -1.1909 -0.0008 8 6 1.4907 -2.5116 -0.0005 9 6 1.1392 -2.8921 -1.4157 10 8 1.4474 -2.1623 -2.3341 11 7 0.4815 -4.0427 -1.6606 12 6 0.1452 -4.4154 -3.0369 13 6 -0.5874 -5.7585 -3.0370 14 1 -1.5439 -5.6508 -2.5255 15 6 -0.8283 -6.2081 -4.4795 16 7 0.2296 -6.7620 -2.3415 17 6 -0.6089 -7.8394 -1.7991 18 6 0.2621 -8.8470 -1.0939 19 8 1.4631 -8.6839 -1.0481 20 7 -0.2936 -9.9299 -0.5151 21 6 0.4987 -10.8468 0.1260 22 1 1.5681 -10.7012 0.1676 23 6 -0.0739 -11.9636 0.7224 24 7 -1.3751 -12.1406 0.6723 25 14 1.0055 -13.2126 1.5965 26 1 2.4252 -12.7850 1.5121 27 1 0.6001 -13.3057 3.0221 28 1 0.8496 -14.5403 0.9498 29 1 -0.3633 -0.0003 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8897 -0.5141 32 1 1.6968 2.1377 -0.0004 33 1 4.1584 2.0753 -0.0010 34 1 4.1584 -2.0751 0.0077 35 1 0.5784 -2.4246 0.5896 36 1 2.1322 -3.2787 0.4333 37 1 0.2347 -4.6261 -0.9260 38 1 -0.4975 -3.6509 -3.4736 39 1 1.0595 -4.5002 -3.6242 40 1 0.1282 -6.3158 -4.9910 41 1 -1.3498 -7.1652 -4.4796 42 1 -1.4344 -5.4636 -4.9957 43 1 0.9443 -7.1316 -2.9503 44 1 -1.3256 -7.4213 -1.0922 45 1 -1.1442 -8.3280 -2.6133 46 1 -1.2540 -10.0606 -0.5520 47 1 -1.7750 -12.9204 1.0882 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731600708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:36 Heat of formation + Delta-G solvation = -49.150211 kcal Electronic energy + Delta-G solvation = -27758.079205 eV Core-core repulsion = 23747.212820 eV Total energy + Delta-G solvation = -4010.866385 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.73379 -39.44046 -38.46352 -36.97576 -34.57830 -34.16813 -33.76699 -32.66972 -31.35662 -30.77905 -28.88707 -27.80484 -26.47613 -25.81334 -23.97942 -23.00983 -22.00707 -21.06266 -20.20047 -19.35640 -17.97410 -17.14607 -16.97442 -16.69114 -16.42048 -15.98482 -15.59006 -15.25574 -14.96109 -14.66891 -14.64261 -14.40674 -13.95198 -13.76748 -13.52131 -13.31323 -13.11573 -13.06904 -13.03190 -12.86588 -12.69553 -12.57698 -12.24143 -12.05234 -11.74273 -11.63566 -11.55950 -11.45631 -11.10913 -11.03754 -10.38435 -10.27582 -10.01237 -9.60083 -9.57817 -9.57456 -9.10273 -9.01082 -8.56491 -8.17921 -8.02053 -6.47327 -3.88233 0.94197 1.10306 2.62312 3.12450 3.17554 3.23725 3.30702 3.69216 3.83933 4.00614 4.23748 4.24992 4.45078 4.48841 4.66495 4.72388 4.75320 4.82297 4.99156 5.06390 5.11162 5.15650 5.19788 5.21800 5.26798 5.28062 5.40612 5.44041 5.56705 5.61597 5.63996 5.70693 5.73116 5.82731 5.88104 5.94113 5.99587 6.14752 6.19575 6.45902 6.55210 7.07551 7.50271 7.52035 7.56786 7.84065 8.00634 8.23965 8.54883 9.12481 9.48186 9.99131 10.70285 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013972 B = 0.002125 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.508181 B =13174.508827 C =14389.492341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.027 4.027 3 C -0.176 4.176 4 C 0.096 3.904 5 N -0.489 5.489 6 C 0.115 3.885 7 C -0.114 4.114 8 C -0.102 4.102 9 C 0.513 3.487 10 O -0.544 6.544 11 N -0.711 5.711 12 C 0.135 3.865 13 C 0.068 3.932 14 H 0.084 0.916 15 C -0.181 4.181 16 N -0.664 5.664 17 C 0.050 3.950 18 C 0.439 3.561 19 O -0.583 6.583 20 N -0.563 5.563 21 C -0.299 4.299 22 H 0.104 0.896 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.132 0.868 33 H 0.153 0.847 34 H 0.155 0.845 35 H 0.105 0.895 36 H 0.110 0.890 37 H 0.410 0.590 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.354 0.646 44 H 0.085 0.915 45 H 0.045 0.955 46 H 0.392 0.608 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.519 21.699 -2.985 22.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.035 4.035 3 C -0.195 4.195 4 C -0.060 4.060 5 N -0.197 5.197 6 C -0.042 4.042 7 C -0.116 4.116 8 C -0.143 4.143 9 C 0.299 3.701 10 O -0.421 6.421 11 N -0.363 5.363 12 C 0.010 3.990 13 C -0.043 4.043 14 H 0.102 0.898 15 C -0.241 4.241 16 N -0.296 5.296 17 C -0.083 4.083 18 C 0.224 3.776 19 O -0.467 6.467 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.150 0.850 33 H 0.170 0.830 34 H 0.172 0.828 35 H 0.123 0.877 36 H 0.128 0.872 37 H 0.246 0.754 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.174 0.826 44 H 0.104 0.896 45 H 0.063 0.937 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.669 22.511 -2.951 22.713 hybrid contribution -1.491 -1.654 -0.102 2.229 sum -2.160 20.857 -3.053 21.189 Atomic orbital electron populations 1.20845 0.90478 1.03558 1.02578 1.20129 0.96607 0.92482 0.94328 1.21971 0.95638 0.98411 1.03524 1.22708 0.91768 0.96249 0.95308 1.67688 1.41109 0.98445 1.12499 1.22654 0.90932 0.96375 0.94229 1.20178 0.94961 0.94240 1.02250 1.20615 1.02468 0.95666 0.95521 1.20393 0.77716 0.81161 0.90820 1.90714 1.53518 1.51672 1.46237 1.45810 1.58424 1.22142 1.09943 1.21310 0.99690 0.94603 0.83386 1.21855 0.96762 0.92034 0.93639 0.89798 1.22438 1.02585 1.02032 0.97009 1.60187 1.13869 1.14916 1.40668 1.21722 0.95523 0.92415 0.98647 1.19800 0.88896 0.83874 0.85002 1.90536 1.15006 1.77182 1.63953 1.41874 1.10049 1.19749 1.48297 1.19745 0.93021 1.00310 1.29777 0.87858 1.25270 0.96133 0.98532 0.98031 1.69618 1.09659 1.29823 1.45152 0.85804 0.80050 0.79798 0.78728 1.19193 1.20708 1.20765 0.90422 0.90966 0.91078 0.84984 0.82962 0.82823 0.87730 0.87190 0.75374 0.91506 0.91598 0.91974 0.91910 0.91873 0.82622 0.89646 0.93709 0.77492 0.91894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.90 9.31 36.00 0.34 -0.56 16 2 C -0.03 -0.27 5.92 -104.32 -0.62 -0.89 16 3 C -0.18 -1.62 9.82 -39.44 -0.39 -2.01 16 4 C 0.10 0.98 11.18 -17.55 -0.20 0.78 16 5 N -0.49 -6.14 10.36 -13.25 -0.14 -6.27 16 6 C 0.12 1.37 10.84 -17.54 -0.19 1.18 16 7 C -0.11 -1.24 4.39 -104.48 -0.46 -1.70 16 8 C -0.10 -0.96 5.18 -29.03 -0.15 -1.11 16 9 C 0.51 6.18 7.15 -10.98 -0.08 6.11 16 10 O -0.54 -8.56 16.03 5.55 0.09 -8.47 16 11 N -0.71 -7.80 5.39 -60.30 -0.32 -8.13 16 12 C 0.13 1.46 5.37 -4.04 -0.02 1.43 16 13 C 0.07 0.70 2.75 -67.71 -0.19 0.51 16 14 H 0.08 0.79 7.80 -51.93 -0.40 0.39 16 15 C -0.18 -1.66 9.16 37.16 0.34 -1.32 16 16 N -0.66 -9.12 5.31 -107.98 -0.57 -9.69 16 17 C 0.05 0.77 5.97 -4.97 -0.03 0.74 16 18 C 0.44 9.66 7.82 -10.98 -0.09 9.58 16 19 O -0.58 -14.99 15.78 5.55 0.09 -14.90 16 20 N -0.56 -13.59 5.29 -10.96 -0.06 -13.65 16 21 C -0.30 -8.08 9.68 -14.94 -0.14 -8.22 16 22 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -23.86 13.05 55.50 0.72 -23.14 16 25 Si 0.93 20.58 29.55 -169.99 -5.02 15.56 16 26 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 27 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 28 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 31 H 0.07 0.59 6.36 -51.93 -0.33 0.26 16 32 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 35 H 0.10 0.74 7.10 -51.93 -0.37 0.37 16 36 H 0.11 0.91 8.06 -51.93 -0.42 0.49 16 37 H 0.41 4.26 8.14 -40.82 -0.33 3.92 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 41 H 0.06 0.60 7.45 -51.93 -0.39 0.21 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.35 5.35 8.17 -39.29 -0.32 5.03 16 44 H 0.09 1.18 8.06 -51.93 -0.42 0.76 16 45 H 0.04 0.64 7.43 -51.93 -0.39 0.25 16 46 H 0.39 9.03 7.90 -40.82 -0.32 8.71 16 47 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 397.03 15.07 5.98 5.98 Total: -1.00 -33.86 397.03 -8.20 -42.07 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: -7.00 Total: 15.66 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: -1.97 Total: 5.00 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: -0.37 Total: -60.88 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: 0.18 Total: -23.37 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.86 -8.20 -42.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731600708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.085 kcal (2) G-P(sol) polarization free energy of solvation -33.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds