Wall clock time and date at job start Tue Mar 31 2020 17:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38671 * 120.79228 * 2 1 4 4 C 1.38181 * 119.16318 * 180.02562 * 3 2 1 5 5 N 1.31886 * 120.76668 * 0.02562 * 4 3 2 6 6 C 1.31865 * 121.72347 * 359.68705 * 5 4 3 7 7 C 1.38218 * 120.75925 * 0.58061 * 6 5 4 8 8 C 1.50701 * 120.41710 * 179.73203 * 7 6 5 9 9 C 1.50703 * 109.47355 * 264.72046 * 8 7 6 10 10 O 1.21283 * 119.99488 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00290 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99828 * 180.27728 * 11 9 8 13 13 C 1.52996 * 109.47059 * 179.72339 * 12 11 9 14 14 H 1.09002 * 109.47682 * 64.99618 * 13 12 11 15 15 C 1.53003 * 109.47530 * 184.99929 * 13 12 11 16 16 N 1.46906 * 109.47076 * 304.99500 * 13 12 11 17 17 C 1.46903 * 110.99854 * 154.99879 * 16 13 12 18 18 C 1.50706 * 109.46788 * 180.02562 * 17 16 13 19 19 O 1.21289 * 119.99769 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99565 * 180.02562 * 18 17 16 21 21 C 1.37093 * 119.99800 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00230 * 0.02562 * 21 20 18 23 23 C 1.38950 * 120.00440 * 180.02562 * 21 20 18 24 24 N 1.31414 * 119.99595 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00614 * 180.02562 * 23 21 20 26 26 H 1.48508 * 109.46803 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47533 * 119.99695 * 25 23 21 28 28 H 1.48500 * 109.47031 * 240.00136 * 25 23 21 29 29 H 1.09004 * 109.47109 * 269.98435 * 1 2 3 30 30 H 1.09001 * 109.46909 * 29.97556 * 1 2 3 31 31 H 1.08995 * 109.47624 * 149.98096 * 1 2 3 32 32 H 1.07996 * 120.42236 * 359.97438 * 3 2 1 33 33 H 1.08002 * 119.61921 * 179.97438 * 4 3 2 34 34 H 1.07999 * 119.61789 * 180.28608 * 6 5 4 35 35 H 1.08998 * 109.47477 * 144.71892 * 8 7 6 36 36 H 1.09002 * 109.47412 * 24.72151 * 8 7 6 37 37 H 0.97001 * 119.99727 * 359.97438 * 11 9 8 38 38 H 1.09004 * 109.46963 * 299.72135 * 12 11 9 39 39 H 1.08994 * 109.47567 * 59.72287 * 12 11 9 40 40 H 1.09002 * 109.46892 * 59.99206 * 15 13 12 41 41 H 1.09001 * 109.47478 * 179.97438 * 15 13 12 42 42 H 1.09000 * 109.46800 * 300.00452 * 15 13 12 43 43 H 1.00899 * 111.00368 * 278.95496 * 16 13 12 44 44 H 1.09001 * 109.47321 * 299.99877 * 17 16 13 45 45 H 1.08999 * 109.46905 * 60.00434 * 17 16 13 46 46 H 0.96997 * 120.00270 * 359.97438 * 20 18 17 47 47 H 0.97007 * 120.00346 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5981 1.1519 -0.0005 5 7 4.2403 0.0000 -0.0016 6 6 3.5982 -1.1518 0.0040 7 6 2.2166 -1.1909 -0.0008 8 6 1.4907 -2.5116 -0.0005 9 6 1.1392 -2.8921 -1.4157 10 8 1.4474 -2.1623 -2.3341 11 7 0.4815 -4.0427 -1.6606 12 6 0.1452 -4.4154 -3.0369 13 6 -0.5874 -5.7585 -3.0370 14 1 -1.5439 -5.6508 -2.5255 15 6 -0.8283 -6.2081 -4.4795 16 7 0.2296 -6.7620 -2.3415 17 6 -0.6089 -7.8394 -1.7991 18 6 0.2621 -8.8470 -1.0939 19 8 1.4631 -8.6839 -1.0481 20 7 -0.2936 -9.9299 -0.5151 21 6 0.4987 -10.8468 0.1260 22 1 1.5681 -10.7012 0.1676 23 6 -0.0739 -11.9636 0.7224 24 7 -1.3751 -12.1406 0.6723 25 14 1.0055 -13.2126 1.5965 26 1 2.4252 -12.7850 1.5121 27 1 0.6001 -13.3057 3.0221 28 1 0.8496 -14.5403 0.9498 29 1 -0.3633 -0.0003 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8897 -0.5141 32 1 1.6968 2.1377 -0.0004 33 1 4.1584 2.0753 -0.0010 34 1 4.1584 -2.0751 0.0077 35 1 0.5784 -2.4246 0.5896 36 1 2.1322 -3.2787 0.4333 37 1 0.2347 -4.6261 -0.9260 38 1 -0.4975 -3.6509 -3.4736 39 1 1.0595 -4.5002 -3.6242 40 1 0.1282 -6.3158 -4.9910 41 1 -1.3498 -7.1652 -4.4796 42 1 -1.4344 -5.4636 -4.9957 43 1 0.9443 -7.1316 -2.9503 44 1 -1.3256 -7.4213 -1.0922 45 1 -1.1442 -8.3280 -2.6133 46 1 -1.2540 -10.0606 -0.5520 47 1 -1.7750 -12.9204 1.0882 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731600708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:35 Heat of formation + Delta-G solvation = -74.906760 kcal Electronic energy + Delta-G solvation = -27759.196093 eV Core-core repulsion = 23747.212820 eV Total energy + Delta-G solvation = -4011.983273 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.53778 -40.42044 -40.05792 -38.12131 -35.95493 -35.33422 -34.95703 -33.43847 -33.24321 -31.89463 -29.63350 -28.52069 -27.94469 -26.75954 -25.59575 -23.78080 -22.77263 -21.97139 -21.12925 -21.03729 -19.89835 -18.15985 -17.76637 -17.69798 -17.40931 -17.14733 -16.69607 -16.53305 -16.29688 -15.87933 -15.80060 -15.45920 -15.33260 -14.94461 -14.50712 -14.38775 -14.18151 -13.84648 -13.72527 -13.66469 -13.61245 -13.53021 -13.42575 -13.33646 -13.05762 -12.82016 -12.76171 -12.51176 -12.37627 -12.25892 -12.11276 -11.88035 -11.49300 -11.00223 -10.40140 -10.32023 -10.30836 -9.98742 -9.95889 -9.89214 -9.33057 -8.45411 -5.93211 0.16909 0.34072 1.37189 1.43109 1.56365 1.69430 2.09135 2.29241 2.32714 2.87903 2.94640 3.22687 3.51055 3.55248 3.70517 3.83174 3.87730 3.94302 4.03190 4.06006 4.17225 4.34311 4.37431 4.48416 4.51551 4.51792 4.61459 4.64022 4.67174 4.72566 4.75721 4.80363 4.89862 4.91248 5.01398 5.06481 5.20207 5.26060 5.42222 5.43245 5.55547 5.82440 5.91063 6.12015 6.36610 6.62583 6.66749 7.04996 7.15543 7.33073 7.60073 8.15515 8.71978 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013972 B = 0.002125 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.508181 B =13174.508827 C =14389.492341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.039 4.039 3 C -0.175 4.175 4 C 0.083 3.917 5 N -0.520 5.520 6 C 0.091 3.909 7 C -0.126 4.126 8 C -0.097 4.097 9 C 0.513 3.487 10 O -0.585 6.585 11 N -0.706 5.706 12 C 0.137 3.863 13 C 0.077 3.923 14 H 0.103 0.897 15 C -0.178 4.178 16 N -0.673 5.673 17 C 0.066 3.934 18 C 0.438 3.562 19 O -0.623 6.623 20 N -0.574 5.574 21 C -0.329 4.329 22 H 0.077 0.923 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.989 3.011 26 H -0.275 1.275 27 H -0.271 1.271 28 H -0.273 1.273 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.063 0.937 32 H 0.162 0.838 33 H 0.177 0.823 34 H 0.155 0.845 35 H 0.131 0.869 36 H 0.118 0.882 37 H 0.415 0.585 38 H 0.077 0.923 39 H 0.047 0.953 40 H 0.055 0.945 41 H 0.061 0.939 42 H 0.081 0.919 43 H 0.344 0.656 44 H 0.111 0.889 45 H 0.066 0.934 46 H 0.397 0.603 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.415 22.509 -2.688 23.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.047 4.047 3 C -0.194 4.194 4 C -0.073 4.073 5 N -0.229 5.229 6 C -0.066 4.066 7 C -0.128 4.128 8 C -0.137 4.137 9 C 0.300 3.700 10 O -0.465 6.465 11 N -0.357 5.357 12 C 0.012 3.988 13 C -0.033 4.033 14 H 0.121 0.879 15 C -0.237 4.237 16 N -0.305 5.305 17 C -0.066 4.066 18 C 0.226 3.774 19 O -0.509 6.509 20 N -0.212 5.212 21 C -0.459 4.459 22 H 0.095 0.905 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.813 3.187 26 H -0.199 1.199 27 H -0.196 1.196 28 H -0.198 1.198 29 H 0.116 0.884 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.180 0.820 33 H 0.194 0.806 34 H 0.172 0.828 35 H 0.149 0.851 36 H 0.136 0.864 37 H 0.252 0.748 38 H 0.095 0.905 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.100 0.900 43 H 0.163 0.837 44 H 0.129 0.871 45 H 0.084 0.916 46 H 0.230 0.770 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.608 23.311 -2.651 23.605 hybrid contribution -0.888 -1.813 -0.243 2.034 sum -3.496 21.497 -2.894 21.971 Atomic orbital electron populations 1.20886 0.88668 1.03716 1.03875 1.20546 0.98067 0.92425 0.93648 1.22327 0.95384 0.99524 1.02208 1.23206 0.92779 0.96426 0.94904 1.67659 1.42231 0.99321 1.13727 1.22813 0.91813 0.96534 0.95412 1.20347 0.94708 0.95351 1.02409 1.20642 1.03647 0.95277 0.94113 1.20801 0.76937 0.80810 0.91422 1.90693 1.55219 1.52964 1.47659 1.45821 1.57839 1.21826 1.10199 1.21309 0.99119 0.95216 0.83166 1.21864 0.96693 0.90383 0.94316 0.87900 1.22395 1.02617 1.02507 0.96175 1.60167 1.14171 1.14702 1.41463 1.21580 0.94509 0.91331 0.99179 1.20954 0.89102 0.83838 0.83527 1.90512 1.17337 1.78050 1.65048 1.41937 1.10023 1.20251 1.48968 1.19654 0.92385 1.02090 1.31794 0.90468 1.25979 0.97408 0.99667 0.98225 1.69669 1.10513 1.30444 1.45455 0.84923 0.77996 0.77686 0.78066 1.19927 1.19642 1.19817 0.88414 0.89886 0.91824 0.82025 0.80583 0.82817 0.85104 0.86363 0.74833 0.90480 0.93457 0.92620 0.91954 0.90023 0.83717 0.87065 0.91595 0.76952 0.91389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.49 9.31 71.24 0.66 -0.83 16 2 C -0.04 -0.73 5.92 -19.67 -0.12 -0.84 16 3 C -0.18 -2.96 9.82 22.36 0.22 -2.74 16 4 C 0.08 1.64 11.18 84.67 0.95 2.59 16 5 N -0.52 -13.34 10.36 -195.84 -2.03 -15.37 16 6 C 0.09 2.23 10.84 84.68 0.92 3.15 16 7 C -0.13 -2.71 4.39 -19.78 -0.09 -2.79 16 8 C -0.10 -1.73 5.18 29.10 0.15 -1.58 16 9 C 0.51 12.06 7.15 87.66 0.63 12.69 16 10 O -0.58 -18.46 16.03 -3.04 -0.05 -18.51 16 11 N -0.71 -14.63 5.39 -463.07 -2.50 -17.12 16 12 C 0.14 2.77 5.37 86.38 0.46 3.23 16 13 C 0.08 1.41 2.75 44.91 0.12 1.53 16 14 H 0.10 1.55 7.80 -2.39 -0.02 1.53 16 15 C -0.18 -2.85 9.16 71.98 0.66 -2.19 16 16 N -0.67 -17.50 5.31 -495.54 -2.63 -20.13 16 17 C 0.07 1.92 5.97 85.56 0.51 2.43 16 18 C 0.44 19.21 7.82 87.66 0.69 19.90 16 19 O -0.62 -32.59 15.78 -3.06 -0.05 -32.64 16 20 N -0.57 -27.83 5.29 -306.99 -1.62 -29.45 16 21 C -0.33 -18.10 9.68 84.04 0.81 -17.28 16 22 H 0.08 4.57 7.16 -2.91 -0.02 4.55 16 23 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 24 N -0.92 -48.16 13.05 21.66 0.28 -47.88 16 25 Si 0.99 42.05 29.55 68.60 2.03 44.08 16 26 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 27 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 28 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 29 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.08 0.89 8.10 -2.39 -0.02 0.87 16 31 H 0.06 0.93 6.36 -2.39 -0.02 0.91 16 32 H 0.16 1.65 8.06 -2.91 -0.02 1.62 16 33 H 0.18 2.36 8.06 -2.91 -0.02 2.34 16 34 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 35 H 0.13 1.59 7.10 -2.39 -0.02 1.57 16 36 H 0.12 1.89 8.06 -2.39 -0.02 1.87 16 37 H 0.41 7.90 8.14 -92.71 -0.75 7.14 16 38 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 39 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.05 0.97 8.13 -2.39 -0.02 0.95 16 41 H 0.06 1.03 7.45 -2.39 -0.02 1.01 16 42 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.34 10.23 8.17 -89.70 -0.73 9.50 16 44 H 0.11 2.72 8.06 -2.39 -0.02 2.70 16 45 H 0.07 1.68 7.43 -2.39 -0.02 1.67 16 46 H 0.40 18.15 7.90 -92.71 -0.73 17.42 16 47 H 0.28 13.58 8.31 -92.70 -0.77 12.81 16 Total: -1.00 -74.89 397.03 -0.72 -75.62 By element: Atomic # 1 Polarization: 45.57 SS G_CDS: -1.20 Total: 44.37 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: 7.05 Total: 17.04 kcal Atomic # 7 Polarization: -121.46 SS G_CDS: -8.50 Total: -129.96 kcal Atomic # 8 Polarization: -51.05 SS G_CDS: -0.10 Total: -51.15 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -74.89 -0.72 -75.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731600708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.710 kcal (2) G-P(sol) polarization free energy of solvation -74.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds