Wall clock time and date at job start Tue Mar 31 2020 17:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38045 * 126.28945 * 2 1 4 4 C 1.47423 * 126.41952 * 0.02562 * 3 2 1 5 5 O 1.21609 * 119.99817 * 359.97438 * 4 3 2 6 6 N 1.34772 * 120.00189 * 180.02562 * 4 3 2 7 7 C 1.46507 * 119.99853 * 179.97438 * 6 4 3 8 8 C 1.50695 * 109.46895 * 180.02562 * 7 6 4 9 9 O 1.21297 * 120.00259 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00124 * 180.02562 * 8 7 6 11 11 C 1.37101 * 120.00427 * 179.97438 * 10 8 7 12 12 H 1.07994 * 119.99909 * 0.02562 * 11 10 8 13 13 C 1.38951 * 120.00025 * 179.97438 * 11 10 8 14 14 N 1.31409 * 119.99938 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99988 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.46853 * 59.99983 * 15 13 11 17 17 H 1.48490 * 109.47083 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46618 * 300.00404 * 15 13 11 19 19 C 1.41295 * 107.16746 * 179.90837 * 3 2 1 20 20 N 1.30450 * 108.02379 * 0.35884 * 19 3 2 21 21 N 1.34263 * 126.28910 * 180.31149 * 2 1 3 22 22 C 1.46496 * 125.75571 * 359.94770 * 21 2 1 23 23 C 1.52997 * 109.46989 * 239.99808 * 22 21 2 24 24 C 1.52998 * 109.47551 * 179.97438 * 23 22 21 25 25 C 1.53004 * 109.46709 * 59.99756 * 24 23 22 26 26 C 1.52996 * 109.47474 * 300.00034 * 25 24 23 27 27 C 1.52995 * 109.47376 * 119.99675 * 22 21 2 28 28 H 1.09002 * 109.47152 * 269.68682 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.68783 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.68764 * 1 2 3 31 31 H 0.96993 * 120.00050 * 359.97438 * 6 4 3 32 32 H 1.09000 * 109.47143 * 299.99873 * 7 6 4 33 33 H 1.08997 * 109.47339 * 59.99773 * 7 6 4 34 34 H 0.97009 * 120.00014 * 359.97438 * 10 8 7 35 35 H 0.97001 * 119.99884 * 179.97438 * 14 13 11 36 36 H 1.07996 * 125.99267 * 180.16110 * 19 3 2 37 37 H 1.08998 * 109.47257 * 359.97438 * 22 21 2 38 38 H 1.09003 * 109.47458 * 299.99970 * 23 22 21 39 39 H 1.09002 * 109.47417 * 59.99437 * 23 22 21 40 40 H 1.08998 * 109.47208 * 299.99880 * 24 23 22 41 41 H 1.08996 * 109.47385 * 179.97438 * 24 23 22 42 42 H 1.09006 * 109.46838 * 179.97438 * 25 24 23 43 43 H 1.09006 * 109.47189 * 60.00437 * 25 24 23 44 44 H 1.08998 * 109.46977 * 300.00202 * 26 25 24 45 45 H 1.08990 * 109.47509 * 180.02562 * 26 25 24 46 46 H 1.09003 * 109.47354 * 299.99844 * 27 22 21 47 47 H 1.09006 * 109.47178 * 59.99975 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8859 2.5203 0.0005 5 8 0.6996 2.7878 0.0006 6 7 2.8000 3.5107 -0.0001 7 6 2.3644 4.9095 -0.0001 8 6 3.5717 5.8114 -0.0014 9 8 4.6863 5.3329 -0.0018 10 7 3.4130 7.1498 -0.0012 11 6 4.5113 7.9704 -0.0019 12 1 5.5036 7.5444 -0.0030 13 6 4.3476 9.3502 -0.0022 14 7 3.1400 9.8686 -0.0012 15 14 5.8440 10.4683 -0.0038 16 1 6.6584 10.2034 -1.2169 17 1 5.4026 11.8861 -0.0032 18 1 6.6606 10.2040 1.2081 19 6 3.6591 0.6498 0.0022 20 7 3.6341 -0.6544 -0.0044 21 7 2.3017 -1.0822 -0.0059 22 6 1.8501 -2.4758 -0.0124 23 6 2.3799 -3.1894 1.2330 24 6 1.9078 -4.6447 1.2266 25 6 2.4353 -5.3464 -0.0265 26 6 1.9054 -4.6329 -1.2719 27 6 2.3779 -3.1772 -1.2654 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5187 30 1 -0.3633 0.8928 -0.5090 31 1 3.7462 3.2973 -0.0005 32 1 1.7654 5.1035 -0.8899 33 1 1.7662 5.1038 0.8901 34 1 2.5216 7.5325 -0.0005 35 1 3.0258 10.8319 -0.0011 36 1 4.5449 1.2675 0.0052 37 1 0.7605 -2.5047 -0.0113 38 1 3.4696 -3.1606 1.2323 39 1 2.0039 -2.6897 2.1257 40 1 0.8182 -4.6732 1.2276 41 1 2.2857 -5.1531 2.1136 42 1 2.0993 -6.3834 -0.0308 43 1 3.5250 -5.3179 -0.0275 44 1 0.8158 -4.6614 -1.2709 45 1 2.2807 -5.1330 -2.1645 46 1 2.0004 -2.6688 -2.1527 47 1 3.4676 -3.1484 -1.2662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344126063.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:05 Heat of formation + Delta-G solvation = -25.430509 kcal Electronic energy + Delta-G solvation = -28022.776855 eV Core-core repulsion = 24012.939034 eV Total energy + Delta-G solvation = -4009.837822 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.65300 -39.27374 -38.60208 -37.86910 -34.43017 -33.79722 -33.33340 -32.13172 -31.34655 -31.32188 -29.48380 -27.97819 -26.81306 -24.53451 -23.51923 -23.14298 -22.37347 -20.73944 -19.85149 -19.56646 -19.29091 -18.06665 -17.58864 -16.32530 -15.77948 -15.68190 -15.55756 -15.10294 -14.97979 -14.78885 -14.55984 -14.43219 -14.08362 -13.99700 -13.62048 -13.46934 -13.25004 -13.15063 -13.05734 -12.77168 -12.61533 -12.38331 -12.12724 -11.85573 -11.77161 -11.66392 -11.60138 -11.13297 -11.07836 -11.03859 -10.78526 -10.73124 -10.48299 -10.28269 -9.60849 -9.59340 -9.44525 -8.83129 -8.58751 -8.47370 -8.06567 -6.48245 -3.90093 1.48988 2.14127 2.21505 3.16311 3.23626 3.27103 3.56298 3.65932 3.80017 3.97724 4.15247 4.16881 4.28268 4.44545 4.47555 4.66664 4.69837 4.80281 4.89184 4.90471 4.93542 4.96301 5.06278 5.20413 5.22668 5.29275 5.37830 5.42538 5.49787 5.53731 5.59595 5.66493 5.68787 5.75581 5.76887 5.92837 5.94148 6.03302 6.05056 6.13326 6.41661 6.76760 6.81149 7.48956 7.50777 7.95345 7.97485 8.48597 8.60871 9.07919 9.43074 9.91233 10.68606 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.032803 B = 0.001876 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.369085 B =14924.248383 C =15426.207781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.153 3.847 3 C -0.291 4.291 4 C 0.593 3.407 5 O -0.559 6.559 6 N -0.704 5.704 7 C 0.112 3.888 8 C 0.429 3.571 9 O -0.597 6.597 10 N -0.550 5.550 11 C -0.305 4.305 12 H 0.105 0.895 13 C 0.025 3.975 14 N -0.895 5.895 15 Si 0.934 3.066 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.273 1.273 19 C 0.085 3.915 20 N -0.296 5.296 21 N -0.358 5.358 22 C 0.161 3.839 23 C -0.127 4.127 24 C -0.116 4.116 25 C -0.124 4.124 26 C -0.116 4.116 27 C -0.127 4.127 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.108 0.892 31 H 0.409 0.591 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.396 0.604 35 H 0.274 0.726 36 H 0.192 0.808 37 H 0.102 0.898 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.593 -28.218 -0.033 28.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.021 3.979 3 C -0.305 4.305 4 C 0.381 3.619 5 O -0.440 6.440 6 N -0.357 5.357 7 C -0.016 4.016 8 C 0.214 3.786 9 O -0.484 6.484 10 N -0.185 5.185 11 C -0.434 4.434 12 H 0.123 0.877 13 C -0.177 4.177 14 N -0.535 5.535 15 Si 0.760 3.240 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.198 1.198 19 C -0.103 4.103 20 N -0.114 5.114 21 N -0.138 5.138 22 C 0.060 3.940 23 C -0.165 4.165 24 C -0.154 4.154 25 C -0.161 4.161 26 C -0.154 4.154 27 C -0.165 4.165 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.127 0.873 31 H 0.247 0.753 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.230 0.770 35 H 0.084 0.916 36 H 0.208 0.792 37 H 0.120 0.880 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.062 -29.297 -0.041 29.917 hybrid contribution 0.247 1.658 0.019 1.677 sum -5.815 -27.639 -0.022 28.244 Atomic orbital electron populations 1.20687 0.86317 1.04684 1.04021 1.21477 0.94799 0.86294 0.95326 1.19984 0.92917 0.93422 1.24222 1.17141 0.85314 0.83615 0.75849 1.90700 1.16573 1.84401 1.52283 1.45450 1.10761 1.05003 1.74482 1.20919 0.96451 0.80995 1.03211 1.19776 0.89749 0.83591 0.85441 1.90493 1.25752 1.74843 1.57279 1.41789 1.10043 1.03884 1.62747 1.19682 0.88351 0.87125 1.48270 0.87735 1.25317 0.98082 0.97480 0.96852 1.69608 1.21186 1.13365 1.49387 0.85874 0.80637 0.78325 0.79133 1.19803 1.20891 1.19806 1.24137 0.97457 0.91953 0.96758 1.77115 0.96127 1.13052 1.25130 1.48635 1.04046 1.05598 1.55500 1.21440 0.99257 0.76035 0.97291 1.21872 1.02763 0.95505 0.96337 1.21515 1.00991 0.94399 0.98500 1.21599 1.01204 0.99121 0.94213 1.21521 1.00977 0.94359 0.98546 1.21889 1.02790 0.95575 0.96274 0.89672 0.91491 0.87301 0.75287 0.89857 0.89847 0.77034 0.91585 0.79174 0.88010 0.90177 0.91327 0.91637 0.91131 0.91569 0.91557 0.91647 0.91132 0.91323 0.90165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.97 9.40 36.01 0.34 -0.64 16 2 C 0.15 1.90 7.01 -81.60 -0.57 1.33 16 3 C -0.29 -4.21 6.13 -105.07 -0.64 -4.86 16 4 C 0.59 9.99 7.81 -12.52 -0.10 9.89 16 5 O -0.56 -10.43 14.83 5.27 0.08 -10.35 16 6 N -0.70 -12.23 5.52 -62.56 -0.35 -12.58 16 7 C 0.11 2.10 6.15 -5.19 -0.03 2.07 16 8 C 0.43 9.92 7.85 -10.99 -0.09 9.83 16 9 O -0.60 -15.36 15.24 5.54 0.08 -15.27 16 10 N -0.55 -13.72 5.29 -10.96 -0.06 -13.78 16 11 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 12 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 13 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 14 N -0.90 -24.00 13.05 55.50 0.72 -23.27 16 15 Si 0.93 20.68 29.55 -169.99 -5.02 15.65 16 16 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 17 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 19 C 0.08 1.13 11.50 -16.98 -0.20 0.94 16 20 N -0.30 -3.87 12.33 30.86 0.38 -3.49 16 21 N -0.36 -4.04 3.25 -50.17 -0.16 -4.20 16 22 C 0.16 1.27 2.89 -67.94 -0.20 1.07 16 23 C -0.13 -0.91 5.45 -26.73 -0.15 -1.06 16 24 C -0.12 -0.58 5.92 -26.73 -0.16 -0.74 16 25 C -0.12 -0.59 5.92 -26.73 -0.16 -0.75 16 26 C -0.12 -0.58 5.93 -26.71 -0.16 -0.74 16 27 C -0.13 -0.92 5.46 -26.71 -0.15 -1.06 16 28 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.47 7.07 -51.93 -0.37 0.10 16 30 H 0.11 1.28 6.48 -51.93 -0.34 0.95 16 31 H 0.41 6.96 6.39 -40.82 -0.26 6.70 16 32 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 33 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 34 H 0.40 9.49 7.90 -40.82 -0.32 9.17 16 35 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 36 H 0.19 2.19 7.50 -52.49 -0.39 1.80 16 37 H 0.10 0.63 6.63 -51.93 -0.34 0.29 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 42 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 46 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 386.30 15.07 5.82 5.82 Total: -1.00 -32.24 386.30 -8.02 -40.27 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: -7.03 Total: 13.82 kcal Atomic # 6 Polarization: 9.88 SS G_CDS: -2.49 Total: 7.39 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: 0.54 Total: -57.32 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: 0.16 Total: -25.63 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.24 -8.02 -40.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344126063.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.835 kcal (2) G-P(sol) polarization free energy of solvation -32.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds