Wall clock time and date at job start Tue Mar 31 2020 17:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38045 * 126.28945 * 2 1 4 4 C 1.47423 * 126.41952 * 0.02562 * 3 2 1 5 5 O 1.21609 * 119.99817 * 359.97438 * 4 3 2 6 6 N 1.34772 * 120.00189 * 180.02562 * 4 3 2 7 7 C 1.46507 * 119.99853 * 179.97438 * 6 4 3 8 8 C 1.50695 * 109.46895 * 180.02562 * 7 6 4 9 9 O 1.21297 * 120.00259 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00124 * 180.02562 * 8 7 6 11 11 C 1.37101 * 120.00427 * 179.97438 * 10 8 7 12 12 H 1.07994 * 119.99909 * 0.02562 * 11 10 8 13 13 C 1.38951 * 120.00025 * 179.97438 * 11 10 8 14 14 N 1.31409 * 119.99938 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99988 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.46853 * 59.99983 * 15 13 11 17 17 H 1.48490 * 109.47083 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46618 * 300.00404 * 15 13 11 19 19 C 1.41295 * 107.16746 * 179.90837 * 3 2 1 20 20 N 1.30450 * 108.02379 * 0.35884 * 19 3 2 21 21 N 1.34263 * 126.28910 * 180.31149 * 2 1 3 22 22 C 1.46496 * 125.75571 * 359.94770 * 21 2 1 23 23 C 1.52997 * 109.46989 * 239.99808 * 22 21 2 24 24 C 1.52998 * 109.47551 * 179.97438 * 23 22 21 25 25 C 1.53004 * 109.46709 * 59.99756 * 24 23 22 26 26 C 1.52996 * 109.47474 * 300.00034 * 25 24 23 27 27 C 1.52995 * 109.47376 * 119.99675 * 22 21 2 28 28 H 1.09002 * 109.47152 * 269.68682 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.68783 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.68764 * 1 2 3 31 31 H 0.96993 * 120.00050 * 359.97438 * 6 4 3 32 32 H 1.09000 * 109.47143 * 299.99873 * 7 6 4 33 33 H 1.08997 * 109.47339 * 59.99773 * 7 6 4 34 34 H 0.97009 * 120.00014 * 359.97438 * 10 8 7 35 35 H 0.97001 * 119.99884 * 179.97438 * 14 13 11 36 36 H 1.07996 * 125.99267 * 180.16110 * 19 3 2 37 37 H 1.08998 * 109.47257 * 359.97438 * 22 21 2 38 38 H 1.09003 * 109.47458 * 299.99970 * 23 22 21 39 39 H 1.09002 * 109.47417 * 59.99437 * 23 22 21 40 40 H 1.08998 * 109.47208 * 299.99880 * 24 23 22 41 41 H 1.08996 * 109.47385 * 179.97438 * 24 23 22 42 42 H 1.09006 * 109.46838 * 179.97438 * 25 24 23 43 43 H 1.09006 * 109.47189 * 60.00437 * 25 24 23 44 44 H 1.08998 * 109.46977 * 300.00202 * 26 25 24 45 45 H 1.08990 * 109.47509 * 180.02562 * 26 25 24 46 46 H 1.09003 * 109.47354 * 299.99844 * 27 22 21 47 47 H 1.09006 * 109.47178 * 59.99975 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8859 2.5203 0.0005 5 8 0.6996 2.7878 0.0006 6 7 2.8000 3.5107 -0.0001 7 6 2.3644 4.9095 -0.0001 8 6 3.5717 5.8114 -0.0014 9 8 4.6863 5.3329 -0.0018 10 7 3.4130 7.1498 -0.0012 11 6 4.5113 7.9704 -0.0019 12 1 5.5036 7.5444 -0.0030 13 6 4.3476 9.3502 -0.0022 14 7 3.1400 9.8686 -0.0012 15 14 5.8440 10.4683 -0.0038 16 1 6.6584 10.2034 -1.2169 17 1 5.4026 11.8861 -0.0032 18 1 6.6606 10.2040 1.2081 19 6 3.6591 0.6498 0.0022 20 7 3.6341 -0.6544 -0.0044 21 7 2.3017 -1.0822 -0.0059 22 6 1.8501 -2.4758 -0.0124 23 6 2.3799 -3.1894 1.2330 24 6 1.9078 -4.6447 1.2266 25 6 2.4353 -5.3464 -0.0265 26 6 1.9054 -4.6329 -1.2719 27 6 2.3779 -3.1772 -1.2654 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5187 30 1 -0.3633 0.8928 -0.5090 31 1 3.7462 3.2973 -0.0005 32 1 1.7654 5.1035 -0.8899 33 1 1.7662 5.1038 0.8901 34 1 2.5216 7.5325 -0.0005 35 1 3.0258 10.8319 -0.0011 36 1 4.5449 1.2675 0.0052 37 1 0.7605 -2.5047 -0.0113 38 1 3.4696 -3.1606 1.2323 39 1 2.0039 -2.6897 2.1257 40 1 0.8182 -4.6732 1.2276 41 1 2.2857 -5.1531 2.1136 42 1 2.0993 -6.3834 -0.0308 43 1 3.5250 -5.3179 -0.0275 44 1 0.8158 -4.6614 -1.2709 45 1 2.2807 -5.1330 -2.1645 46 1 2.0004 -2.6688 -2.1527 47 1 3.4676 -3.1484 -1.2662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344126063.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:04 Heat of formation + Delta-G solvation = -46.726155 kcal Electronic energy + Delta-G solvation = -28023.700304 eV Core-core repulsion = 24012.939034 eV Total energy + Delta-G solvation = -4010.761270 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.61892 -40.71277 -39.73025 -39.11148 -36.22537 -35.30964 -34.28292 -33.35597 -33.01180 -31.80887 -30.47442 -29.13726 -28.04176 -26.35220 -24.25241 -23.62640 -23.52487 -21.55466 -21.34015 -20.65168 -20.36672 -19.98910 -18.78022 -17.55831 -17.18565 -16.81867 -16.61006 -16.36460 -16.28490 -16.23964 -15.70453 -15.32394 -15.29281 -14.99081 -14.86173 -14.79452 -14.12862 -13.93903 -13.88026 -13.76596 -13.54218 -13.52198 -13.32266 -13.23811 -13.21647 -12.88483 -12.45358 -12.36127 -12.14248 -12.12811 -11.87721 -11.55694 -11.54760 -11.34729 -11.31674 -10.91332 -10.53555 -10.33631 -10.19964 -10.06904 -9.58855 -8.49256 -5.99303 0.47822 1.12098 1.29178 1.39266 1.43542 1.54449 1.92676 2.14381 2.36466 2.43939 3.16181 3.17918 3.28722 3.55121 3.63199 3.72357 3.87697 4.00099 4.06133 4.16479 4.17783 4.23515 4.27774 4.43173 4.43684 4.48204 4.49122 4.54422 4.56364 4.65011 4.83616 4.89866 5.01249 5.02620 5.13916 5.15098 5.16504 5.26299 5.32164 5.35192 5.39759 5.41351 5.50122 5.92477 5.94113 6.47133 6.50845 6.64580 7.05213 7.25102 7.46661 7.96912 8.67365 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.032803 B = 0.001876 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.369085 B =14924.248383 C =15426.207781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.160 3.840 3 C -0.321 4.321 4 C 0.596 3.404 5 O -0.580 6.580 6 N -0.707 5.707 7 C 0.125 3.875 8 C 0.433 3.567 9 O -0.624 6.624 10 N -0.559 5.559 11 C -0.338 4.338 12 H 0.086 0.914 13 C -0.011 4.011 14 N -0.915 5.915 15 Si 0.997 3.003 16 H -0.270 1.270 17 H -0.271 1.271 18 H -0.270 1.270 19 C 0.080 3.920 20 N -0.311 5.311 21 N -0.350 5.350 22 C 0.151 3.849 23 C -0.122 4.122 24 C -0.111 4.111 25 C -0.123 4.123 26 C -0.111 4.111 27 C -0.123 4.123 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.411 0.589 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.399 0.601 35 H 0.280 0.720 36 H 0.200 0.800 37 H 0.128 0.872 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.054 0.946 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.063 0.937 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.700 -29.877 -0.015 30.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.026 3.974 3 C -0.335 4.335 4 C 0.385 3.615 5 O -0.462 6.462 6 N -0.360 5.360 7 C -0.002 4.002 8 C 0.220 3.780 9 O -0.512 6.512 10 N -0.195 5.195 11 C -0.467 4.467 12 H 0.104 0.896 13 C -0.211 4.211 14 N -0.555 5.555 15 Si 0.820 3.180 16 H -0.196 1.196 17 H -0.196 1.196 18 H -0.196 1.196 19 C -0.107 4.107 20 N -0.130 5.130 21 N -0.129 5.129 22 C 0.052 3.948 23 C -0.160 4.160 24 C -0.149 4.149 25 C -0.161 4.161 26 C -0.148 4.148 27 C -0.161 4.161 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.108 0.892 31 H 0.248 0.752 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.233 0.767 35 H 0.089 0.911 36 H 0.216 0.784 37 H 0.146 0.854 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.073 0.927 44 H 0.100 0.900 45 H 0.094 0.906 46 H 0.081 0.919 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.177 -30.992 -0.023 31.813 hybrid contribution 0.564 2.045 0.013 2.121 sum -6.613 -28.948 -0.010 29.693 Atomic orbital electron populations 1.20758 0.84312 1.05387 1.04991 1.21870 0.95989 0.85971 0.93581 1.19917 0.93895 0.92690 1.27019 1.17404 0.84819 0.84264 0.74972 1.90682 1.17262 1.84844 1.53385 1.45455 1.11006 1.04510 1.75007 1.20751 0.94290 0.80929 1.04280 1.20450 0.90647 0.83453 0.83473 1.90470 1.27436 1.75333 1.57963 1.41832 1.09701 1.04443 1.63502 1.19703 0.88353 0.88207 1.50456 0.89611 1.26120 1.00957 0.98231 0.95824 1.69674 1.22645 1.13959 1.49263 0.84931 0.77257 0.76757 0.79050 1.19551 1.19590 1.19557 1.24309 0.97589 0.92204 0.96619 1.77084 0.97537 1.12871 1.25476 1.48956 1.03249 1.06659 1.54020 1.21877 1.00745 0.74288 0.97923 1.21828 1.01434 0.97074 0.95694 1.21508 1.01942 0.92547 0.98854 1.21603 1.00587 0.99934 0.93955 1.21514 1.01936 0.92501 0.98899 1.21846 1.01465 0.97151 0.95629 0.88442 0.88105 0.89201 0.75159 0.88703 0.88691 0.76670 0.91090 0.78353 0.85420 0.92256 0.91866 0.89998 0.90642 0.90044 0.92677 0.89994 0.90644 0.91856 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.70 9.40 71.24 0.67 -1.03 16 2 C 0.16 3.79 7.01 42.14 0.30 4.08 16 3 C -0.32 -9.25 6.13 -20.15 -0.12 -9.37 16 4 C 0.60 20.05 7.81 86.66 0.68 20.73 16 5 O -0.58 -21.47 14.83 -4.06 -0.06 -21.53 16 6 N -0.71 -24.70 5.52 -470.11 -2.59 -27.29 16 7 C 0.13 4.69 6.15 85.63 0.53 5.22 16 8 C 0.43 20.32 7.85 87.66 0.69 21.01 16 9 O -0.62 -32.76 15.24 -3.08 -0.05 -32.81 16 10 N -0.56 -28.40 5.29 -306.99 -1.62 -30.03 16 11 C -0.34 -18.80 9.68 84.04 0.81 -17.98 16 12 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 13 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 14 N -0.92 -48.90 13.05 21.66 0.28 -48.62 16 15 Si 1.00 42.14 29.55 68.60 2.03 44.17 16 16 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 17 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 18 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 19 C 0.08 2.17 11.50 85.65 0.99 3.16 16 20 N -0.31 -8.14 12.33 -56.27 -0.69 -8.83 16 21 N -0.35 -7.52 3.25 -312.64 -1.02 -8.54 16 22 C 0.15 2.10 2.89 44.99 0.13 2.23 16 23 C -0.12 -1.59 5.45 30.59 0.17 -1.42 16 24 C -0.11 -0.83 5.92 30.59 0.18 -0.65 16 25 C -0.12 -0.90 5.92 30.59 0.18 -0.72 16 26 C -0.11 -0.83 5.93 30.61 0.18 -0.65 16 27 C -0.12 -1.59 5.46 30.61 0.17 -1.43 16 28 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.10 1.05 7.07 -2.39 -0.02 1.04 16 30 H 0.09 2.01 6.48 -2.38 -0.02 2.00 16 31 H 0.41 14.22 6.39 -92.71 -0.59 13.63 16 32 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 33 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 34 H 0.40 19.42 7.90 -92.70 -0.73 18.69 16 35 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 36 H 0.20 4.73 7.50 -2.91 -0.02 4.70 16 37 H 0.13 1.13 6.63 -2.39 -0.02 1.11 16 38 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.08 0.39 8.14 -2.38 -0.02 0.37 16 43 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 44 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 45 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 Total: -1.00 -69.66 386.30 1.97 -67.69 By element: Atomic # 1 Polarization: 43.02 SS G_CDS: -0.32 Total: 42.70 kcal Atomic # 6 Polarization: 17.08 SS G_CDS: 6.01 Total: 23.08 kcal Atomic # 7 Polarization: -117.66 SS G_CDS: -5.64 Total: -123.31 kcal Atomic # 8 Polarization: -54.23 SS G_CDS: -0.11 Total: -54.34 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -69.66 1.97 -67.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344126063.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.966 kcal (2) G-P(sol) polarization free energy of solvation -69.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds