Wall clock time and date at job start Tue Mar 31 2020 18:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34770 * 120.00213 * 2 1 4 4 O 1.21281 * 119.99962 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99915 * 180.02562 * 3 2 1 6 6 H 1.08994 * 110.54096 * 57.38291 * 5 3 2 7 7 C 1.54886 * 110.48555 * 294.76764 * 5 3 2 8 8 C 1.54889 * 102.74961 * 203.38075 * 7 5 3 9 9 C 1.54371 * 104.19800 * 37.96989 * 8 7 5 10 10 C 1.53870 * 106.54602 * 336.35463 * 9 8 7 11 11 H 1.08997 * 110.03507 * 119.34394 * 10 9 8 12 12 N 1.46502 * 110.03298 * 240.72959 * 10 9 8 13 13 C 1.34774 * 119.99689 * 272.90549 * 12 10 9 14 14 O 1.21610 * 120.00287 * 359.97438 * 13 12 10 15 15 C 1.47428 * 120.00160 * 179.97438 * 13 12 10 16 16 C 1.41295 * 126.41360 * 0.02803 * 15 13 12 17 17 N 1.30439 * 108.02242 * 179.73480 * 16 15 13 18 18 N 1.39929 * 108.90076 * 0.02562 * 17 16 15 19 19 C 1.46501 * 125.75427 * 180.02562 * 18 17 16 20 20 C 1.50704 * 109.47107 * 89.97924 * 19 18 17 21 21 H 1.08009 * 119.99535 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00312 * 179.97438 * 20 19 18 23 23 N 1.31517 * 120.00041 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 119.99814 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47164 * 90.00454 * 24 22 20 26 26 H 1.48503 * 109.46775 * 209.99811 * 24 22 20 27 27 H 1.48500 * 109.47361 * 329.99887 * 24 22 20 28 28 C 1.34257 * 108.49157 * 359.97438 * 18 17 16 29 29 C 1.50709 * 126.29188 * 179.97438 * 28 18 17 30 30 H 1.08999 * 109.46433 * 60.00420 * 1 2 3 31 31 H 1.08999 * 109.47084 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46699 * 300.00397 * 1 2 3 33 33 H 0.97006 * 119.99783 * 179.97438 * 2 1 3 34 34 H 1.08994 * 110.75706 * 321.69881 * 7 5 3 35 35 H 1.09009 * 110.75395 * 84.88420 * 7 5 3 36 36 H 1.09004 * 110.48764 * 156.62329 * 8 7 5 37 37 H 1.08997 * 110.48581 * 279.13283 * 8 7 5 38 38 H 1.08995 * 110.04777 * 217.08703 * 9 8 7 39 39 H 1.09004 * 110.06977 * 95.62497 * 9 8 7 40 40 H 0.97000 * 120.00127 * 92.90364 * 12 10 9 41 41 H 1.08001 * 125.98267 * 359.76702 * 16 15 13 42 42 H 1.09005 * 109.47551 * 209.97541 * 19 18 17 43 43 H 1.08997 * 109.47830 * 329.98047 * 19 18 17 44 44 H 0.96999 * 120.00293 * 180.02562 * 23 22 20 45 45 H 1.09002 * 109.46812 * 270.05073 * 29 28 18 46 46 H 1.08998 * 109.47037 * 30.04521 * 29 28 18 47 47 H 1.09003 * 109.46807 * 150.04999 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5326 2.2175 -0.0005 5 6 3.6460 1.1670 -0.0006 6 1 4.0280 0.6171 -0.8605 7 6 4.1885 0.5589 1.3165 8 6 5.6072 1.1723 1.4174 9 6 5.4327 2.6167 0.9013 10 6 4.1860 2.6122 -0.0005 11 1 3.4335 3.2919 0.3992 12 7 4.5500 3.0118 -1.3622 13 6 4.5721 4.3168 -1.6982 14 8 4.2894 5.1625 -0.8713 15 6 4.9391 4.7191 -3.0683 16 6 5.2891 3.8558 -4.1306 17 7 5.5405 4.5885 -5.1800 18 7 5.3665 5.9358 -4.8444 19 6 5.5524 7.0740 -5.7478 20 6 4.2504 7.3829 -6.4410 21 1 3.3724 6.7904 -6.2299 22 6 4.1800 8.4220 -7.3446 23 7 3.0438 8.6912 -7.9498 24 14 5.6983 9.4472 -7.7090 25 1 6.4444 8.8416 -8.8413 26 1 5.2882 10.8284 -8.0688 27 1 6.5693 9.4867 -6.5069 28 6 4.9995 6.0094 -3.5550 29 6 4.7079 7.2694 -2.7811 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.9501 -0.8401 0.0004 34 1 3.5748 0.8634 2.1642 35 1 4.2385 -0.5279 1.2484 36 1 5.9485 1.1761 2.4526 37 1 6.3064 0.6217 0.7882 38 1 6.3086 2.9162 0.3260 39 1 5.2849 3.2980 1.7392 40 1 4.7752 2.3372 -2.0218 41 1 5.3392 2.7780 -4.0822 42 1 5.8744 7.9438 -5.1752 43 1 6.3103 6.8277 -6.4915 44 1 2.9943 9.4220 -8.5858 45 1 5.6255 7.6314 -2.3174 46 1 4.3185 8.0297 -3.4581 47 1 3.9689 7.0581 -2.0082 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889788607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:42 Heat of formation + Delta-G solvation = -12.509021 kcal Electronic energy + Delta-G solvation = -28813.247533 eV Core-core repulsion = 24803.970029 eV Total energy + Delta-G solvation = -4009.277504 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.89085 -40.45521 -38.78858 -37.21619 -34.88574 -33.96240 -33.42110 -32.08759 -31.22337 -30.08266 -28.56355 -27.31909 -26.73982 -26.36838 -23.15601 -22.34451 -21.95502 -20.84335 -20.15203 -19.68968 -18.93604 -17.86827 -17.18889 -17.05477 -16.47584 -15.87072 -15.42334 -15.11038 -15.02032 -14.79445 -14.45440 -14.30186 -13.96718 -13.80941 -13.49787 -13.27788 -13.04632 -12.70280 -12.62724 -12.51659 -12.42546 -12.19244 -12.10637 -11.96158 -11.73389 -11.54604 -11.43628 -11.18845 -11.18047 -10.82191 -10.78664 -10.36397 -10.19420 -9.99838 -9.76641 -9.42754 -9.32573 -8.87655 -8.82699 -8.60090 -7.90767 -6.30413 -4.35134 2.20399 2.41039 2.77984 2.87699 3.10454 3.14916 3.19005 3.25116 3.57571 3.92783 4.10035 4.17698 4.23566 4.47313 4.75788 4.93875 4.94751 5.00338 5.08394 5.10919 5.18549 5.22149 5.25051 5.31176 5.35940 5.46692 5.51925 5.58610 5.71018 5.73826 5.85864 5.92263 6.03797 6.06167 6.08287 6.19080 6.32539 6.46205 6.58445 6.65272 6.74799 7.07106 7.15314 7.20972 7.61332 7.81711 7.98093 8.22852 8.32603 8.70506 8.73690 9.23406 10.81881 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018216 B = 0.002563 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.721818 B =10921.183019 C =11642.048787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.737 5.737 3 C 0.516 3.484 4 O -0.522 6.522 5 C -0.123 4.123 6 H 0.107 0.893 7 C -0.110 4.110 8 C -0.122 4.122 9 C -0.136 4.136 10 C 0.159 3.841 11 H 0.110 0.890 12 N -0.728 5.728 13 C 0.606 3.394 14 O -0.550 6.550 15 C -0.327 4.327 16 C 0.060 3.940 17 N -0.294 5.294 18 N -0.315 5.315 19 C 0.225 3.775 20 C -0.546 4.546 21 H 0.082 0.918 22 C 0.081 3.919 23 N -0.883 5.883 24 Si 0.874 3.126 25 H -0.270 1.270 26 H -0.279 1.279 27 H -0.264 1.264 28 C 0.169 3.831 29 C -0.100 4.100 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.400 0.600 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.394 0.606 41 H 0.176 0.824 42 H 0.053 0.947 43 H 0.050 0.950 44 H 0.270 0.730 45 H 0.076 0.924 46 H 0.082 0.918 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.520 -20.275 18.965 27.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.390 5.390 3 C 0.302 3.698 4 O -0.397 6.397 5 C -0.145 4.145 6 H 0.125 0.875 7 C -0.149 4.149 8 C -0.159 4.159 9 C -0.174 4.174 10 C 0.053 3.947 11 H 0.128 0.872 12 N -0.379 5.379 13 C 0.396 3.604 14 O -0.428 6.428 15 C -0.343 4.343 16 C -0.127 4.127 17 N -0.114 5.114 18 N -0.091 5.091 19 C 0.106 3.894 20 C -0.584 4.584 21 H 0.100 0.900 22 C -0.124 4.124 23 N -0.520 5.520 24 Si 0.700 3.300 25 H -0.196 1.196 26 H -0.204 1.204 27 H -0.188 1.188 28 C 0.032 3.968 29 C -0.158 4.158 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.234 0.766 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.228 0.772 41 H 0.193 0.807 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.080 0.920 45 H 0.095 0.905 46 H 0.101 0.899 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.124 -18.619 18.029 26.105 hybrid contribution 0.630 -0.392 -0.091 0.748 sum 3.754 -19.011 17.938 26.406 Atomic orbital electron populations 1.21544 0.79579 1.02099 1.02557 1.45782 1.07765 1.08615 1.76792 1.20506 0.89900 0.83663 0.75759 1.90783 1.70013 1.31099 1.47791 1.22445 0.91904 0.98949 1.01158 0.87541 1.22447 0.97028 0.99961 0.95426 1.22369 0.96027 0.95953 1.01592 1.22639 0.98377 0.96674 0.99753 1.21392 0.96744 0.93578 0.82955 0.87210 1.45778 1.72181 1.07641 1.12305 1.17241 0.75328 0.81670 0.86179 1.90696 1.49963 1.50513 1.51641 1.19705 1.26013 0.92617 0.95935 1.23709 0.99499 0.99286 0.90254 1.77113 1.23979 0.87343 1.22927 1.48882 1.46719 1.05969 1.07564 1.20146 0.99733 0.80493 0.89025 1.21118 0.94963 1.17264 1.25039 0.90010 1.24798 0.96259 0.96508 0.94820 1.69868 1.25119 1.29912 1.27052 0.86887 0.83157 0.80309 0.79667 1.19550 1.20410 1.18818 1.21462 0.93315 0.96475 0.85500 1.20650 1.03147 0.92284 0.99720 0.92075 0.90737 0.92232 0.76621 0.90673 0.90544 0.91145 0.91157 0.90698 0.90863 0.77199 0.80716 0.92976 0.93182 0.91984 0.90534 0.89878 0.88287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.59 10.70 59.85 0.64 1.23 16 2 N -0.74 -5.16 5.70 -67.08 -0.38 -5.54 16 3 C 0.52 5.46 7.13 -10.99 -0.08 5.38 16 4 O -0.52 -8.34 15.42 5.56 0.09 -8.25 16 5 C -0.12 -0.98 2.95 -90.11 -0.27 -1.25 16 6 H 0.11 0.62 7.73 -51.93 -0.40 0.22 16 7 C -0.11 -0.61 6.31 -24.74 -0.16 -0.77 16 8 C -0.12 -0.75 6.83 -25.02 -0.17 -0.92 16 9 C -0.14 -1.29 6.60 -25.56 -0.17 -1.46 16 10 C 0.16 1.83 2.62 -66.81 -0.17 1.66 16 11 H 0.11 1.71 6.29 -51.93 -0.33 1.38 16 12 N -0.73 -9.35 4.98 -53.79 -0.27 -9.62 16 13 C 0.61 10.55 7.81 -12.52 -0.10 10.45 16 14 O -0.55 -11.08 14.50 5.27 0.08 -11.00 16 15 C -0.33 -6.15 6.13 -105.07 -0.64 -6.79 16 16 C 0.06 1.05 11.50 -16.98 -0.20 0.85 16 17 N -0.29 -6.32 12.50 30.86 0.39 -5.93 16 18 N -0.31 -7.12 3.56 -57.77 -0.21 -7.32 16 19 C 0.22 5.34 4.85 -5.19 -0.03 5.32 16 20 C -0.55 -15.24 9.94 -34.44 -0.34 -15.58 16 21 H 0.08 2.59 8.06 -52.48 -0.42 2.17 16 22 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 23 N -0.88 -26.25 13.96 55.43 0.77 -25.47 16 24 Si 0.87 20.06 27.47 -169.99 -4.67 15.39 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.26 -5.65 6.54 56.52 0.37 -5.28 16 28 C 0.17 3.51 7.01 -81.60 -0.57 2.94 16 29 C -0.10 -1.86 9.34 36.01 0.34 -1.52 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.40 1.42 8.83 -40.82 -0.36 1.06 16 34 H 0.07 0.47 8.05 -51.93 -0.42 0.05 16 35 H 0.08 0.24 8.14 -51.92 -0.42 -0.18 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.77 7.92 -51.93 -0.41 0.36 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.39 3.96 7.30 -40.82 -0.30 3.67 16 41 H 0.18 2.16 7.50 -52.49 -0.39 1.77 16 42 H 0.05 1.16 6.68 -51.93 -0.35 0.81 16 43 H 0.05 1.17 7.57 -51.93 -0.39 0.78 16 44 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 45 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 46 H 0.08 1.59 7.70 -51.93 -0.40 1.19 16 47 H 0.10 1.87 6.49 -51.93 -0.34 1.54 16 LS Contribution 387.59 15.07 5.84 5.84 Total: -1.00 -36.81 387.59 -7.43 -44.25 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -7.06 Total: 5.98 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -2.01 Total: 1.69 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: 0.30 Total: -53.89 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: 0.16 Total: -19.26 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.67 Total: 15.39 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.81 -7.43 -44.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889788607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.738 kcal (2) G-P(sol) polarization free energy of solvation -36.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds