Wall clock time and date at job start Tue Mar 31 2020 19:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35310 * 126.12955 * 2 1 4 4 C 1.39866 * 107.92418 * 180.26555 * 3 2 1 5 5 N 1.30840 * 108.19676 * 359.73969 * 4 3 2 6 6 N 1.34949 * 126.12296 * 179.81746 * 2 1 3 7 7 C 1.46496 * 126.03690 * 359.97438 * 6 2 1 8 8 C 1.50698 * 109.47248 * 269.71754 * 7 6 2 9 9 O 1.21283 * 119.99984 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00096 * 179.72761 * 8 7 6 11 11 C 1.46983 * 120.71602 * 0.02562 * 10 8 7 12 12 C 1.53153 * 108.44630 * 125.45522 * 11 10 8 13 13 C 1.52503 * 109.79628 * 54.51572 * 12 11 10 14 14 H 1.08999 * 108.93713 * 180.98141 * 13 12 11 15 15 O 1.42688 * 110.62264 * 61.27352 * 13 12 11 16 16 C 1.43076 * 113.87151 * 174.64665 * 15 13 12 17 17 C 1.53219 * 109.45230 * 61.64174 * 16 15 13 18 18 N 1.47174 * 108.70275 * 308.43066 * 17 16 15 19 19 C 1.36934 * 121.22758 * 230.95588 * 18 17 16 20 20 H 1.08005 * 120.00172 * 153.51510 * 19 18 17 21 21 C 1.38816 * 119.99991 * 333.52502 * 19 18 17 22 22 N 1.31616 * 119.99768 * 343.47541 * 21 19 18 23 23 Si 1.86802 * 119.99845 * 163.47520 * 21 19 18 24 24 H 1.48502 * 109.46899 * 94.81689 * 23 21 19 25 25 H 1.48498 * 109.47235 * 214.81389 * 23 21 19 26 26 H 1.48497 * 109.47199 * 334.81893 * 23 21 19 27 27 C 1.47596 * 117.54678 * 50.93791 * 18 17 16 28 28 H 1.09003 * 110.31459 * 187.69291 * 27 18 17 29 29 C 1.46786 * 120.71909 * 179.72340 * 10 8 7 30 30 H 1.09007 * 109.47256 * 270.18970 * 1 2 3 31 31 H 1.09005 * 109.47179 * 30.17961 * 1 2 3 32 32 H 1.09000 * 109.47670 * 150.18283 * 1 2 3 33 33 H 1.08009 * 126.04123 * 0.02562 * 3 2 1 34 34 H 1.07990 * 125.90513 * 179.71636 * 4 3 2 35 35 H 1.09005 * 109.47168 * 149.71997 * 7 6 2 36 36 H 1.08995 * 109.47322 * 29.71954 * 7 6 2 37 37 H 1.09002 * 109.64157 * 245.13935 * 11 10 8 38 38 H 1.09000 * 109.64080 * 5.75921 * 11 10 8 39 39 H 1.08997 * 109.41525 * 174.62250 * 12 11 10 40 40 H 1.09011 * 109.41402 * 294.41891 * 12 11 10 41 41 H 1.09001 * 109.47611 * 181.63945 * 16 15 13 42 42 H 1.08996 * 109.47375 * 301.64989 * 16 15 13 43 43 H 1.09006 * 109.60114 * 68.19369 * 17 16 15 44 44 H 1.08993 * 109.60534 * 188.66442 * 17 16 15 45 45 H 0.96999 * 119.99714 * 180.02562 * 22 21 19 46 46 H 1.09000 * 109.52202 * 354.20407 * 29 10 8 47 47 H 1.08993 * 109.52895 * 114.39340 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6559 -0.0062 5 7 3.6333 -0.6525 -0.0041 6 7 2.3026 -1.0901 0.0035 7 6 1.8538 -2.4846 0.0084 8 6 1.7071 -2.9600 1.4309 9 8 1.9527 -2.2079 2.3501 10 7 1.2971 -4.2192 1.6817 11 6 0.9893 -5.1420 0.5799 12 6 1.8194 -6.4153 0.7680 13 6 1.5712 -6.9931 2.1573 14 1 2.1811 -7.8877 2.2826 15 8 0.1973 -7.3434 2.3178 16 6 -0.0912 -8.0045 3.5534 17 6 0.2448 -7.0719 4.7217 18 7 1.6175 -6.5711 4.5461 19 6 2.5363 -6.6485 5.5584 20 1 3.5907 -6.6925 5.3285 21 6 2.1127 -6.6704 6.8802 22 7 0.8883 -6.2959 7.1850 23 14 3.2803 -7.2316 8.2260 24 1 3.9482 -6.0490 8.8266 25 1 2.5164 -7.9542 9.2746 26 1 4.3045 -8.1375 7.6468 27 6 1.9674 -5.9827 3.2385 28 1 3.0367 -5.7769 3.1901 29 6 1.1545 -4.7006 3.0610 30 1 -0.3634 0.0034 1.0277 31 1 -0.3634 0.8884 -0.5166 32 1 -0.3634 -0.8916 -0.5110 33 1 1.9741 2.1211 0.0004 34 1 4.5083 1.2890 -0.0120 35 1 2.5871 -3.1041 -0.5079 36 1 0.8928 -2.5588 -0.5004 37 1 -0.0718 -5.3908 0.5958 38 1 1.2449 -4.6751 -0.3713 39 1 1.5338 -7.1487 0.0141 40 1 2.8776 -6.1775 0.6582 41 1 -1.1493 -8.2642 3.5883 42 1 0.5083 -8.9117 3.6287 43 1 -0.4518 -6.2335 4.7323 44 1 0.1733 -7.6213 5.6604 45 1 0.5924 -6.3109 8.1087 46 1 1.5204 -3.9409 3.7517 47 1 0.1046 -4.9071 3.2682 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074347921.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:03 Heat of formation + Delta-G solvation = 40.027249 kcal Electronic energy + Delta-G solvation = -30234.609561 eV Core-core repulsion = 26227.610200 eV Total energy + Delta-G solvation = -4006.999360 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.32672 -40.10579 -38.59010 -35.85820 -34.71058 -33.55822 -32.19735 -31.77514 -31.54859 -29.68528 -28.08226 -27.06670 -26.92563 -24.75312 -23.88571 -22.84723 -21.63163 -21.20864 -20.42222 -19.18423 -18.34772 -17.45960 -16.95686 -16.74947 -15.72418 -15.56281 -15.48939 -15.14218 -14.79522 -14.59550 -14.46949 -14.01776 -13.98231 -13.62229 -13.54578 -13.20112 -13.00394 -12.86563 -12.78857 -12.52060 -12.40057 -12.21208 -12.12960 -11.99972 -11.43004 -11.11287 -11.02239 -10.82243 -10.66044 -10.60553 -10.30042 -10.25585 -10.08085 -9.91798 -9.68945 -9.16643 -9.05389 -8.65470 -8.48301 -8.34505 -6.80855 -5.90352 -3.34378 1.80084 2.34519 2.65603 2.87527 3.19837 3.32546 3.39749 3.41606 4.23895 4.36762 4.39231 4.44278 4.55361 4.76344 4.84114 4.94928 5.02440 5.09105 5.24022 5.27005 5.34006 5.34737 5.54274 5.61345 5.65068 5.68996 5.70571 5.72686 5.91563 5.97134 6.00912 6.09084 6.11749 6.22724 6.28580 6.37085 6.55384 6.65146 6.68311 6.83948 6.96159 7.03303 7.42701 7.57664 7.67377 7.72495 7.82109 8.24266 8.29460 9.04542 9.65891 10.22846 11.17335 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014369 B = 0.003388 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.145413 B = 8263.672296 C = 9319.379736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.094 3.906 3 C -0.278 4.278 4 C 0.047 3.953 5 N -0.289 5.289 6 N -0.354 5.354 7 C 0.114 3.886 8 C 0.493 3.507 9 O -0.522 6.522 10 N -0.602 5.602 11 C 0.110 3.890 12 C -0.123 4.123 13 C 0.080 3.920 14 H 0.053 0.947 15 O -0.387 6.387 16 C 0.040 3.960 17 C 0.137 3.863 18 N -0.584 5.584 19 C -0.257 4.257 20 H 0.069 0.931 21 C 0.007 3.993 22 N -0.900 5.900 23 Si 0.906 3.094 24 H -0.286 1.286 25 H -0.288 1.288 26 H -0.278 1.278 27 C 0.133 3.867 28 H 0.074 0.926 29 C 0.107 3.893 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.145 0.855 34 H 0.182 0.818 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.041 0.959 43 H 0.028 0.972 44 H 0.096 0.904 45 H 0.256 0.744 46 H 0.088 0.912 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.017 5.530 -18.479 19.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.033 4.033 3 C -0.307 4.307 4 C -0.139 4.139 5 N -0.109 5.109 6 N -0.136 5.136 7 C -0.011 4.011 8 C 0.277 3.723 9 O -0.397 6.397 10 N -0.337 5.337 11 C -0.013 4.013 12 C -0.162 4.162 13 C 0.021 3.979 14 H 0.071 0.929 15 O -0.307 6.307 16 C -0.038 4.038 17 C 0.012 3.988 18 N -0.306 5.306 19 C -0.386 4.386 20 H 0.087 0.913 21 C -0.193 4.193 22 N -0.543 5.543 23 Si 0.735 3.265 24 H -0.213 1.213 25 H -0.214 1.214 26 H -0.203 1.203 27 C 0.025 3.975 28 H 0.092 0.908 29 C -0.016 4.016 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.163 0.837 34 H 0.199 0.801 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.060 0.940 43 H 0.046 0.954 44 H 0.114 0.886 45 H 0.066 0.934 46 H 0.107 0.893 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.416 4.765 -17.887 18.668 hybrid contribution 0.230 0.323 1.139 1.206 sum -2.186 5.089 -16.748 17.640 Atomic orbital electron populations 1.20474 0.87552 1.03429 1.03740 1.21059 0.94610 0.87300 1.00367 1.21161 0.92362 0.98724 1.18427 1.23792 0.98091 0.92175 0.99836 1.77375 0.96204 1.13184 1.24105 1.47966 1.04105 1.04482 1.57083 1.21523 1.02804 0.80141 0.96680 1.20664 0.78227 0.82461 0.90918 1.90778 1.49132 1.54010 1.45774 1.48312 1.65825 1.10879 1.08703 1.21711 1.00831 0.90108 0.88670 1.21800 1.00485 0.96933 0.96983 1.22211 0.84000 0.97645 0.94078 0.92887 1.87703 1.25381 1.78704 1.38895 1.23333 0.99468 0.95565 0.85458 1.21470 0.85494 0.95371 0.96469 1.44314 1.09902 1.66949 1.09442 1.19175 0.88770 1.45777 0.84900 0.91334 1.25064 0.96887 0.99858 0.97444 1.70015 1.17509 1.48854 1.17965 0.86231 0.80153 0.78536 0.81587 1.21270 1.21427 1.20324 1.21530 0.97907 0.90506 0.87591 0.90764 1.22262 1.01624 0.97766 0.79930 0.89867 0.89606 0.91392 0.83696 0.80124 0.86003 0.86418 0.90102 0.90681 0.90183 0.90333 0.90080 0.94047 0.95355 0.88582 0.93413 0.89325 0.91140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.83 10.12 36.01 0.36 -0.47 16 2 C 0.09 1.18 6.93 -82.26 -0.57 0.61 16 3 C -0.28 -3.36 10.72 -40.02 -0.43 -3.79 16 4 C 0.05 0.62 12.03 -17.36 -0.21 0.41 16 5 N -0.29 -4.51 12.58 30.62 0.39 -4.12 16 6 N -0.35 -5.00 3.10 -58.32 -0.18 -5.18 16 7 C 0.11 1.33 5.08 -5.20 -0.03 1.31 16 8 C 0.49 7.97 7.77 -10.99 -0.09 7.89 16 9 O -0.52 -11.19 15.85 5.55 0.09 -11.10 16 10 N -0.60 -9.33 2.97 -173.08 -0.51 -9.85 16 11 C 0.11 1.24 6.18 -3.70 -0.02 1.22 16 12 C -0.12 -1.50 5.82 -26.91 -0.16 -1.65 16 13 C 0.08 1.35 2.72 -26.89 -0.07 1.27 16 14 H 0.05 0.93 8.12 -51.93 -0.42 0.51 16 15 O -0.39 -6.81 9.59 -35.23 -0.34 -7.15 16 16 C 0.04 0.73 6.97 37.27 0.26 0.99 16 17 C 0.14 3.13 4.93 -3.56 -0.02 3.11 16 18 N -0.58 -14.10 2.71 -164.15 -0.45 -14.55 16 19 C -0.26 -6.92 9.69 -15.06 -0.15 -7.06 16 20 H 0.07 1.83 7.88 -52.48 -0.41 1.42 16 21 C 0.01 0.18 4.96 -17.43 -0.09 0.10 16 22 N -0.90 -25.49 11.14 55.49 0.62 -24.87 16 23 Si 0.91 21.50 29.59 -169.99 -5.03 16.47 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 C 0.13 2.71 3.01 -67.32 -0.20 2.51 16 28 H 0.07 1.58 7.99 -51.93 -0.42 1.17 16 29 C 0.11 2.14 5.61 -3.97 -0.02 2.12 16 30 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.49 7.08 -51.93 -0.37 0.13 16 33 H 0.15 1.36 8.06 -52.48 -0.42 0.94 16 34 H 0.18 1.70 8.06 -52.49 -0.42 1.28 16 35 H 0.12 1.19 7.72 -51.93 -0.40 0.79 16 36 H 0.12 0.93 6.82 -51.93 -0.35 0.57 16 37 H 0.08 0.93 7.94 -51.93 -0.41 0.51 16 38 H 0.07 0.56 5.95 -51.93 -0.31 0.25 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 41 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.03 0.69 7.17 -51.93 -0.37 0.32 16 44 H 0.10 2.43 6.14 -51.93 -0.32 2.11 16 45 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 46 H 0.09 2.11 7.00 -51.93 -0.36 1.75 16 47 H 0.07 1.49 6.54 -51.93 -0.34 1.15 16 LS Contribution 371.00 15.07 5.59 5.59 Total: -1.00 -34.74 371.00 -8.25 -43.00 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -7.01 Total: 3.22 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: -1.42 Total: 8.55 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: -0.14 Total: -58.57 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.25 Total: -18.25 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.74 -8.25 -43.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074347921.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.022 kcal (2) G-P(sol) polarization free energy of solvation -34.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds