Wall clock time and date at job start Tue Mar 31 2020 19:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30177 * 126.80140 * 2 1 4 4 O 1.20921 * 111.60471 * 180.02562 * 3 2 1 5 5 C 1.34038 * 111.56431 * 359.76013 * 4 3 2 6 6 C 1.50708 * 126.77690 * 180.29144 * 5 4 3 7 7 C 1.35449 * 106.44736 * 0.38230 * 5 4 3 8 8 C 1.50704 * 128.00401 * 179.90777 * 7 5 4 9 9 N 1.46893 * 109.47295 * 269.67988 * 8 7 5 10 10 C 1.46901 * 111.00360 * 293.95434 * 9 8 7 11 11 C 1.46906 * 110.99932 * 170.00151 * 9 8 7 12 12 C 1.50703 * 109.47109 * 190.00029 * 11 9 8 13 13 O 1.21282 * 120.00082 * 359.97438 * 12 11 9 14 14 N 1.34776 * 119.99978 * 180.02562 * 12 11 9 15 15 C 1.46496 * 119.99846 * 180.02562 * 14 12 11 16 16 C 1.50704 * 109.47056 * 90.00088 * 15 14 12 17 17 H 1.07998 * 120.00154 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99692 * 180.02562 * 16 15 14 19 19 N 1.31509 * 120.00450 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99776 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47239 * 89.99207 * 20 18 16 22 22 H 1.48493 * 109.47018 * 209.99837 * 20 18 16 23 23 H 1.48505 * 109.46823 * 329.99385 * 20 18 16 24 24 C 1.46497 * 119.99801 * 359.97438 * 14 12 11 25 25 C 1.53005 * 109.46961 * 90.00424 * 24 14 12 26 26 C 1.47204 * 109.46788 * 179.97438 * 25 24 14 27 27 N 9.38738 * 77.96861 * 179.64919 * 2 1 3 28 28 H 1.08997 * 109.47349 * 269.97819 * 1 2 3 29 29 H 1.09007 * 109.47539 * 29.97294 * 1 2 3 30 30 H 1.08996 * 109.47386 * 149.97301 * 1 2 3 31 31 H 1.08997 * 109.46869 * 270.11319 * 6 5 4 32 32 H 1.08998 * 109.47008 * 30.10816 * 6 5 4 33 33 H 1.08992 * 109.47321 * 150.11098 * 6 5 4 34 34 H 1.09004 * 109.46439 * 149.67974 * 8 7 5 35 35 H 1.08994 * 109.47235 * 29.68776 * 8 7 5 36 36 H 1.08995 * 109.47046 * 296.04847 * 10 9 8 37 37 H 1.09008 * 109.46903 * 56.04730 * 10 9 8 38 38 H 1.08999 * 109.47457 * 176.04446 * 10 9 8 39 39 H 1.08992 * 109.47459 * 309.99948 * 11 9 8 40 40 H 1.09004 * 109.47040 * 70.00098 * 11 9 8 41 41 H 1.09002 * 109.47248 * 209.99764 * 15 14 12 42 42 H 1.09000 * 109.47481 * 330.00016 * 15 14 12 43 43 H 0.96994 * 120.00664 * 180.02562 * 19 18 16 44 44 H 1.09000 * 109.47065 * 210.00008 * 24 14 12 45 45 H 1.09002 * 109.47641 * 330.00367 * 24 14 12 46 46 H 1.09000 * 109.46892 * 299.99690 * 25 24 14 47 47 H 1.08998 * 109.46794 * 60.00269 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 -0.0005 5 6 3.6024 -0.6067 0.0043 6 6 4.9021 -1.3695 0.0114 7 6 2.3539 -1.1320 -0.0006 8 6 1.9590 -2.5864 -0.0001 9 7 1.8296 -3.0591 -1.3849 10 6 0.7111 -2.3935 -2.0660 11 6 1.6798 -4.5197 -1.4307 12 6 1.7963 -4.9922 -2.8570 13 8 1.9850 -4.1909 -3.7477 14 7 1.6897 -6.3049 -3.1429 15 6 1.8035 -6.7642 -4.5293 16 6 3.2459 -7.0715 -4.8399 17 1 4.0021 -6.9377 -4.0806 18 6 3.6000 -7.5226 -6.0938 19 7 2.6793 -7.6851 -7.0185 20 14 5.3879 -7.9028 -6.4789 21 1 5.6715 -9.3250 -6.1592 22 1 5.6465 -7.6584 -7.9206 23 1 6.2671 -7.0272 -5.6630 24 6 1.4611 -7.2726 -2.0671 25 6 -0.0433 -7.4577 -1.8587 26 6 -0.2729 -8.4306 -0.7781 27 7 -0.4498 -9.1810 0.0562 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3634 0.8903 -0.5134 30 1 -0.3634 -0.8897 -0.5142 31 1 5.2201 -1.5550 -1.0145 32 1 5.6636 -0.7851 0.5278 33 1 4.7627 -2.3201 0.5260 34 1 1.0054 -2.7037 0.5146 35 1 2.7231 -3.1701 0.5132 36 1 -0.2248 -2.6644 -1.5773 37 1 0.8471 -1.3131 -2.0172 38 1 0.6810 -2.7092 -3.1089 39 1 2.4610 -4.9842 -0.8292 40 1 0.7029 -4.7974 -1.0346 41 1 1.2031 -7.6638 -4.6646 42 1 1.4455 -5.9841 -5.2011 43 1 2.9283 -8.0027 -7.9005 44 1 1.9109 -8.2283 -2.3364 45 1 1.9130 -6.9052 -1.1457 46 1 -0.4931 -6.5020 -1.5894 47 1 -0.4951 -7.8252 -2.7801 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054989234.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:53 Heat of formation + Delta-G solvation = 39.614544 kcal Electronic energy + Delta-G solvation = -29028.606001 eV Core-core repulsion = 25021.588745 eV Total energy + Delta-G solvation = -4007.017256 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.84930 -40.84573 -38.48767 -37.83743 -36.57110 -35.45716 -34.79806 -34.35286 -32.09999 -30.41966 -29.94024 -29.13662 -28.21760 -27.65410 -25.28337 -25.07832 -23.60188 -21.94084 -20.93507 -19.84690 -18.77142 -18.65811 -18.28825 -18.09884 -17.63913 -17.05032 -16.58512 -16.35277 -15.95646 -15.65344 -15.40334 -15.34510 -14.92356 -14.55560 -14.40486 -14.27373 -14.23034 -13.95334 -13.81409 -13.60503 -13.51143 -13.48716 -13.43248 -13.18501 -12.98238 -12.94982 -12.74520 -12.69716 -12.50950 -12.43861 -12.31724 -12.11875 -11.78801 -11.75261 -11.60574 -10.82842 -10.54563 -10.41152 -10.08771 -9.40074 -9.10838 -8.13946 -6.25652 0.55343 1.22103 1.41908 1.44802 1.53680 1.74687 1.88539 2.01407 2.25241 2.33424 2.48051 3.07938 3.17923 3.27705 3.28864 3.58776 3.86003 3.94757 4.06231 4.11398 4.18205 4.35083 4.43518 4.44574 4.48045 4.56375 4.63933 4.66693 4.69471 4.72373 4.79450 4.82960 4.89564 4.90099 5.01791 5.11680 5.14877 5.17477 5.26624 5.35292 5.40082 5.67595 5.92801 6.04550 6.14906 6.18657 6.65326 6.83331 6.91533 7.35491 7.40789 7.66805 8.92423 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009645 B = 0.003305 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2902.265683 B = 8469.325342 C =10241.297123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.021 3.979 3 N -0.405 5.405 4 O 0.072 5.928 5 C -0.014 4.014 6 C -0.071 4.071 7 C -0.206 4.206 8 C 0.138 3.862 9 N -0.541 5.541 10 C 0.025 3.975 11 C 0.045 3.955 12 C 0.502 3.498 13 O -0.572 6.572 14 N -0.600 5.600 15 C 0.262 3.738 16 C -0.536 4.536 17 H 0.055 0.945 18 C 0.010 3.990 19 N -0.928 5.928 20 Si 0.955 3.045 21 H -0.267 1.267 22 H -0.288 1.288 23 H -0.273 1.273 24 C 0.114 3.886 25 C -0.038 4.038 26 C 0.246 3.754 27 N -0.490 5.490 28 H 0.097 0.903 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.111 0.889 34 H 0.070 0.930 35 H 0.110 0.890 36 H 0.048 0.952 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.128 0.872 40 H 0.098 0.902 41 H 0.032 0.968 42 H 0.001 0.999 43 H 0.264 0.736 44 H 0.081 0.919 45 H 0.111 0.889 46 H 0.137 0.863 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.615 8.622 18.681 20.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.138 4.138 3 N -0.115 5.115 4 O 0.012 5.988 5 C -0.078 4.078 6 C -0.128 4.128 7 C -0.211 4.211 8 C 0.011 3.989 9 N -0.266 5.266 10 C -0.123 4.123 11 C -0.085 4.085 12 C 0.290 3.710 13 O -0.451 6.451 14 N -0.332 5.332 15 C 0.141 3.859 16 C -0.575 4.575 17 H 0.073 0.927 18 C -0.189 4.189 19 N -0.568 5.568 20 Si 0.781 3.219 21 H -0.193 1.193 22 H -0.214 1.214 23 H -0.197 1.197 24 C -0.011 4.011 25 C -0.079 4.079 26 C -0.071 4.071 27 N -0.169 5.169 28 H 0.115 0.885 29 H 0.093 0.907 30 H 0.112 0.888 31 H 0.104 0.896 32 H 0.115 0.885 33 H 0.129 0.871 34 H 0.088 0.912 35 H 0.128 0.872 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.146 0.854 40 H 0.116 0.884 41 H 0.050 0.950 42 H 0.019 0.981 43 H 0.073 0.927 44 H 0.099 0.901 45 H 0.129 0.871 46 H 0.154 0.846 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.564 9.300 19.022 21.472 hybrid contribution 0.182 -0.748 -1.072 1.320 sum -3.382 8.551 17.950 20.169 Atomic orbital electron populations 1.20438 0.84484 1.04486 1.04518 1.23951 1.00036 0.88588 1.01213 1.73811 0.89842 1.25253 1.22621 1.84743 1.21549 1.23803 1.68667 1.24911 0.99794 0.83009 1.00042 1.20497 0.88740 0.98982 1.04630 1.20987 0.91518 0.97656 1.10909 1.20362 1.02440 0.87791 0.88295 1.61452 1.45224 1.04179 1.15772 1.22525 0.91080 0.98960 0.99755 1.22126 1.04929 0.88737 0.92722 1.21177 0.76123 0.81739 0.91950 1.90659 1.49440 1.54415 1.50569 1.48086 1.70271 1.06168 1.08651 1.18732 0.95305 0.93796 0.78081 1.21781 0.94747 1.43402 0.97521 0.92696 1.25708 1.01370 0.95651 0.96130 1.70019 1.34771 1.47430 1.04576 0.85595 0.80418 0.78783 0.77104 1.19267 1.21359 1.19737 1.21521 0.93723 0.94598 0.91249 1.19845 0.98852 0.96244 0.92956 1.29159 0.91768 0.92998 0.93161 1.81265 1.10258 1.12062 1.13267 0.88493 0.90725 0.88758 0.89624 0.88520 0.87094 0.91232 0.87221 0.93394 0.92289 0.92568 0.85381 0.88412 0.95050 0.98075 0.92732 0.90056 0.87113 0.84552 0.86533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.28 9.93 71.23 0.71 -0.57 16 2 C 0.02 0.48 6.41 43.57 0.28 0.76 16 3 N -0.40 -10.92 12.07 -49.56 -0.60 -11.52 16 4 O 0.07 1.85 11.20 71.66 0.80 2.65 16 5 C -0.01 -0.28 7.49 25.04 0.19 -0.09 16 6 C -0.07 -0.99 10.30 71.24 0.73 -0.25 16 7 C -0.21 -4.19 5.11 -19.74 -0.10 -4.29 16 8 C 0.14 2.13 5.29 85.56 0.45 2.59 16 9 N -0.54 -12.00 4.49 -931.64 -4.18 -16.19 16 10 C 0.02 0.59 7.82 127.69 1.00 1.58 16 11 C 0.04 0.88 4.00 85.56 0.34 1.22 16 12 C 0.50 16.55 7.40 87.66 0.65 17.20 16 13 O -0.57 -25.83 13.89 -3.04 -0.04 -25.88 16 14 N -0.60 -19.80 2.46 -826.15 -2.03 -21.82 16 15 C 0.26 12.21 5.16 85.64 0.44 12.65 16 16 C -0.54 -28.20 9.39 25.60 0.24 -27.96 16 17 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 18 C 0.01 0.56 5.46 84.66 0.46 1.02 16 19 N -0.93 -53.36 13.29 21.45 0.28 -53.07 16 20 Si 0.96 43.09 29.54 68.60 2.03 45.11 16 21 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 22 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 24 C 0.11 2.41 5.17 86.38 0.45 2.86 16 25 C -0.04 -0.58 6.03 28.79 0.17 -0.41 16 26 C 0.25 4.73 15.43 89.44 1.38 6.11 16 27 N -0.49 -12.49 18.54 20.01 0.37 -12.12 16 28 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.07 1.18 8.14 -2.38 -0.02 1.17 16 30 H 0.09 1.26 5.50 -2.39 -0.01 1.25 16 31 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.11 1.07 7.43 -2.39 -0.02 1.05 16 34 H 0.07 0.79 8.12 -2.39 -0.02 0.77 16 35 H 0.11 1.21 7.23 -2.39 -0.02 1.19 16 36 H 0.05 0.83 7.57 -2.39 -0.02 0.81 16 37 H 0.06 1.46 5.32 -2.38 -0.01 1.45 16 38 H 0.06 1.80 5.88 -2.39 -0.01 1.79 16 39 H 0.13 1.83 7.19 -2.39 -0.02 1.81 16 40 H 0.10 1.17 7.16 -2.38 -0.02 1.16 16 41 H 0.03 1.46 8.07 -2.39 -0.02 1.44 16 42 H 0.00 0.06 7.42 -2.39 -0.02 0.04 16 43 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 44 H 0.08 1.98 8.07 -2.39 -0.02 1.97 16 45 H 0.11 1.58 6.44 -2.39 -0.02 1.56 16 46 H 0.14 1.31 7.22 -2.39 -0.02 1.29 16 47 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -79.25 392.62 5.02 -74.23 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: 0.99 Total: 6.20 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: 7.39 Total: 12.41 kcal Atomic # 7 Polarization: -108.57 SS G_CDS: -6.16 Total: -114.72 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: 0.76 Total: -23.22 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Total: -79.25 5.02 -74.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054989234.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.841 kcal (2) G-P(sol) polarization free energy of solvation -79.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds