Wall clock time and date at job start Tue Mar 31 2020 19:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38780 * 119.89904 * 2 1 4 4 N 1.31773 * 120.11557 * 179.97438 * 3 2 1 5 5 C 1.33031 * 119.93240 * 0.02562 * 4 3 2 6 6 C 1.48147 * 120.09676 * 180.02562 * 5 4 3 7 7 O 1.21513 * 119.99726 * 186.91005 * 6 5 4 8 8 N 1.34776 * 120.00200 * 6.91092 * 6 5 4 9 9 C 1.46512 * 119.99620 * 356.67871 * 8 6 5 10 10 C 1.50702 * 109.46983 * 277.18589 * 9 8 6 11 11 H 1.08003 * 119.99838 * 0.02562 * 10 9 8 12 12 C 1.37871 * 119.99857 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00038 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99756 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.46720 * 90.00448 * 14 12 10 16 16 H 1.48502 * 109.47176 * 209.99945 * 14 12 10 17 17 H 1.48497 * 109.47203 * 330.00280 * 14 12 10 18 18 C 1.46491 * 120.00442 * 176.67671 * 8 6 5 19 19 C 1.52995 * 109.47287 * 89.99830 * 18 8 6 20 20 N 1.46902 * 109.47431 * 180.02562 * 19 18 8 21 21 C 1.47018 * 111.00171 * 293.63880 * 20 19 18 22 22 C 1.53089 * 109.25882 * 177.60438 * 21 20 19 23 23 O 1.43024 * 109.25913 * 56.84947 * 22 21 20 24 24 C 1.43014 * 113.73478 * 301.32749 * 23 22 21 25 25 C 1.47011 * 111.00060 * 169.99812 * 20 19 18 26 26 C 1.39401 * 119.80682 * 0.27511 * 5 4 3 27 27 N 1.32101 * 119.90484 * 179.97438 * 2 1 3 28 28 H 1.08995 * 109.46819 * 90.00068 * 1 2 3 29 29 H 1.09000 * 109.46500 * 209.99634 * 1 2 3 30 30 H 1.09000 * 109.47207 * 330.00007 * 1 2 3 31 31 H 1.07999 * 119.94207 * 359.97438 * 3 2 1 32 32 H 1.08998 * 109.47284 * 37.18782 * 9 8 6 33 33 H 1.09000 * 109.46438 * 157.19242 * 9 8 6 34 34 H 0.97000 * 119.99448 * 180.02562 * 13 12 10 35 35 H 1.09001 * 109.47619 * 210.00289 * 18 8 6 36 36 H 1.09000 * 109.46991 * 330.00091 * 18 8 6 37 37 H 1.08998 * 109.47430 * 300.00303 * 19 18 8 38 38 H 1.09000 * 109.46891 * 60.00200 * 19 18 8 39 39 H 1.08997 * 109.50006 * 297.54269 * 21 20 19 40 40 H 1.08998 * 109.50438 * 57.67105 * 21 20 19 41 41 H 1.09002 * 109.50853 * 296.91535 * 22 21 20 42 42 H 1.08994 * 109.54693 * 176.80094 * 22 21 20 43 43 H 1.08996 * 109.50976 * 298.73198 * 24 23 22 44 44 H 1.09003 * 109.54319 * 178.62586 * 24 23 22 45 45 H 1.08995 * 109.51103 * 302.32814 * 25 20 19 46 46 H 1.09004 * 109.50310 * 62.42168 * 25 20 19 47 47 H 1.08002 * 120.05974 * 179.70441 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1988 1.2031 0.0000 4 7 3.5166 1.2081 0.0005 5 6 4.1847 0.0577 0.0005 6 6 5.6662 0.0591 0.0017 7 8 6.2747 -0.9850 -0.1250 8 7 6.3389 1.2183 0.1431 9 6 5.6070 2.4850 0.2227 10 6 5.2740 2.9609 -1.1679 11 1 5.5769 2.3780 -2.0251 12 6 4.5827 4.1405 -1.3457 13 7 4.2143 4.8505 -0.3018 14 14 4.1707 4.7308 -3.0694 15 1 2.8510 4.1853 -3.4771 16 1 4.1191 6.2148 -3.0853 17 1 5.2142 4.2615 -4.0160 18 6 7.8020 1.2119 0.2174 19 6 8.3847 1.3421 -1.1912 20 7 9.8518 1.3350 -1.1168 21 6 10.3502 2.5339 -0.4271 22 6 11.8754 2.4570 -0.3191 23 8 12.4343 2.3136 -1.6278 24 6 11.9710 1.1558 -2.3279 25 6 10.4467 1.2194 -2.4562 26 6 3.4868 -1.1490 -0.0058 27 7 2.1657 -1.1451 0.0005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3632 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6563 2.1369 -0.0004 32 1 4.6859 2.3376 0.7866 33 1 6.2245 3.2305 0.7237 34 1 3.7277 5.6802 -0.4270 35 1 8.1385 2.0493 0.8287 36 1 8.1389 0.2769 0.6650 37 1 8.0483 0.5047 -1.8025 38 1 8.0478 2.2771 -1.6388 39 1 10.0696 3.4222 -0.9929 40 1 9.9168 2.5857 0.5717 41 1 12.1542 1.5984 0.2918 42 1 12.2549 3.3694 0.1406 43 1 12.2527 0.2594 -1.7755 44 1 12.4190 1.1268 -3.3212 45 1 10.0839 0.3119 -2.9386 46 1 10.1672 2.0865 -3.0547 47 1 4.0251 -2.0853 -0.0107 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161685621.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:05 Heat of formation + Delta-G solvation = -2.721979 kcal Electronic energy + Delta-G solvation = -29680.469094 eV Core-core repulsion = 25671.615988 eV Total energy + Delta-G solvation = -4008.853106 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.85586 -39.54331 -38.74129 -36.10590 -35.03599 -33.94658 -32.54278 -32.44679 -31.18470 -29.85988 -28.11029 -27.25502 -25.86407 -24.13799 -23.97640 -23.51924 -22.61916 -21.79417 -20.25614 -19.28768 -17.44309 -16.84722 -16.53850 -16.20550 -16.05361 -15.78228 -15.30532 -15.10262 -15.01868 -14.96227 -14.62849 -14.47476 -14.16289 -13.83771 -13.53757 -13.18228 -12.64975 -12.61242 -12.43642 -12.36830 -12.25626 -12.14939 -11.96835 -11.87668 -11.35754 -11.28188 -11.06289 -11.00718 -10.68741 -10.66859 -10.43703 -10.30724 -10.01632 -9.76454 -9.62531 -9.55370 -8.83463 -8.58655 -8.25556 -8.13550 -7.73795 -6.10243 -4.09616 0.84073 1.55523 3.20660 3.23088 3.28485 3.33304 3.55005 3.84253 4.09186 4.25634 4.31587 4.37796 4.66686 4.80570 4.91339 5.05729 5.07371 5.14105 5.18522 5.25888 5.31600 5.36044 5.40138 5.51539 5.58274 5.58820 5.63306 5.69671 5.76965 5.84565 5.90005 5.93401 5.99193 6.01296 6.03608 6.26770 6.44343 6.65160 6.71850 7.05383 7.13853 7.16183 7.41313 7.63146 7.65262 7.82139 8.12063 8.19283 8.24720 8.77366 8.92955 9.50555 10.97742 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011938 B = 0.003808 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.902726 B = 7351.826478 C = 8916.815538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.082 3.918 3 C 0.045 3.955 4 N -0.331 5.331 5 C 0.023 3.977 6 C 0.571 3.429 7 O -0.563 6.563 8 N -0.574 5.574 9 C 0.228 3.772 10 C -0.498 4.498 11 H 0.050 0.950 12 C 0.070 3.930 13 N -0.888 5.888 14 Si 0.882 3.118 15 H -0.282 1.282 16 H -0.286 1.286 17 H -0.277 1.277 18 C 0.127 3.873 19 C 0.044 3.956 20 N -0.535 5.535 21 C 0.013 3.987 22 C 0.065 3.935 23 O -0.389 6.389 24 C 0.066 3.934 25 C 0.018 3.982 26 C 0.099 3.901 27 N -0.456 5.456 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.169 0.831 32 H 0.082 0.918 33 H 0.025 0.975 34 H 0.261 0.739 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.054 0.946 39 H 0.046 0.954 40 H 0.089 0.911 41 H 0.058 0.942 42 H 0.096 0.904 43 H 0.058 0.942 44 H 0.094 0.906 45 H 0.084 0.916 46 H 0.042 0.958 47 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.405 -5.661 1.228 6.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.060 4.060 3 C -0.117 4.117 4 N -0.047 5.047 5 C -0.117 4.117 6 C 0.357 3.643 7 O -0.444 6.444 8 N -0.302 5.302 9 C 0.109 3.891 10 C -0.537 4.537 11 H 0.068 0.932 12 C -0.132 4.132 13 N -0.527 5.527 14 Si 0.711 3.289 15 H -0.208 1.208 16 H -0.212 1.212 17 H -0.202 1.202 18 C 0.003 3.997 19 C -0.084 4.084 20 N -0.261 5.261 21 C -0.116 4.116 22 C -0.012 4.012 23 O -0.308 6.308 24 C -0.011 4.011 25 C -0.110 4.110 26 C -0.061 4.061 27 N -0.171 5.171 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.186 0.814 32 H 0.099 0.901 33 H 0.043 0.957 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.107 0.893 41 H 0.076 0.924 42 H 0.114 0.886 43 H 0.076 0.924 44 H 0.112 0.888 45 H 0.103 0.897 46 H 0.061 0.939 47 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 3.949 -6.277 1.431 7.552 hybrid contribution -0.889 1.193 -1.581 2.171 sum 3.060 -5.084 -0.150 5.935 Atomic orbital electron populations 1.20671 0.88134 1.03614 1.03253 1.22573 0.98277 0.90272 0.94831 1.23948 0.91467 0.98715 0.97590 1.69632 1.07244 1.25624 1.02216 1.22222 0.96236 0.90902 1.02338 1.17666 0.85261 0.83854 0.77477 1.90701 1.68703 1.32095 1.52871 1.48247 1.05917 1.08731 1.67351 1.20145 0.92917 0.77672 0.98395 1.21216 1.35002 1.05693 0.91822 0.93174 1.24738 0.95751 0.96518 0.96153 1.69916 1.39166 1.14923 1.28734 0.86756 0.78833 0.77939 0.85412 1.20776 1.21185 1.20236 1.21262 0.79973 1.02459 0.95986 1.22497 0.85004 1.02203 0.98735 1.62188 1.07642 1.38372 1.17866 1.22852 0.95996 0.92054 1.00668 1.22672 0.92042 1.01981 0.84500 1.87955 1.67984 1.45699 1.29144 1.22642 0.92799 0.88538 0.97139 1.22746 0.95602 1.02011 0.90665 1.23625 0.89966 0.99110 0.93388 1.68356 1.08330 1.29048 1.11384 0.90163 0.90486 0.90206 0.81416 0.90119 0.95698 0.92951 0.90923 0.90207 0.90678 0.92764 0.93573 0.89260 0.92384 0.88632 0.92361 0.88763 0.89741 0.93924 0.80959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.06 10.19 36.01 0.37 -0.70 16 2 C 0.08 1.26 6.79 -82.27 -0.56 0.70 16 3 C 0.04 0.78 10.88 -17.38 -0.19 0.59 16 4 N -0.33 -6.83 5.19 -9.61 -0.05 -6.88 16 5 C 0.02 0.47 6.61 -82.85 -0.55 -0.08 16 6 C 0.57 12.03 7.59 -12.19 -0.09 11.94 16 7 O -0.56 -12.26 15.98 5.35 0.09 -12.17 16 8 N -0.57 -11.93 2.48 -176.06 -0.44 -12.37 16 9 C 0.23 5.29 4.81 -5.19 -0.02 5.27 16 10 C -0.50 -12.53 7.96 -34.44 -0.27 -12.81 16 11 H 0.05 1.33 7.81 -52.48 -0.41 0.92 16 12 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 13 N -0.89 -23.50 13.29 55.43 0.74 -22.76 16 14 Si 0.88 20.44 29.54 -169.99 -5.02 15.42 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 C 0.13 2.29 5.35 -4.05 -0.02 2.27 16 19 C 0.04 0.77 5.28 -3.83 -0.02 0.75 16 20 N -0.53 -8.02 4.73 -234.31 -1.11 -9.13 16 21 C 0.01 0.17 5.44 -3.71 -0.02 0.15 16 22 C 0.07 0.77 7.01 37.20 0.26 1.03 16 23 O -0.39 -5.22 10.83 -35.23 -0.38 -5.60 16 24 C 0.07 0.77 7.01 37.21 0.26 1.03 16 25 C 0.02 0.25 5.65 -3.71 -0.02 0.22 16 26 C 0.10 1.75 10.77 -17.00 -0.18 1.57 16 27 N -0.46 -7.61 10.41 -8.94 -0.09 -7.70 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 31 H 0.17 2.67 8.06 -52.49 -0.42 2.25 16 32 H 0.08 1.97 5.24 -52.08 -0.27 1.70 16 33 H 0.03 0.61 7.81 -51.93 -0.41 0.21 16 34 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 35 H 0.07 1.22 6.22 -51.93 -0.32 0.90 16 36 H 0.08 1.44 7.47 -51.93 -0.39 1.05 16 37 H 0.07 1.42 8.04 -51.93 -0.42 1.00 16 38 H 0.05 1.08 8.10 -51.93 -0.42 0.65 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 1.16 6.38 -51.93 -0.33 0.83 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.08 1.07 8.09 -51.93 -0.42 0.65 16 46 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.17 2.76 7.66 -52.49 -0.40 2.36 16 LS Contribution 382.98 15.07 5.77 5.77 Total: -1.00 -29.64 382.98 -8.81 -38.45 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -7.15 Total: 3.34 kcal Atomic # 6 Polarization: 14.80 SS G_CDS: -1.16 Total: 13.64 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: -0.95 Total: -58.84 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.30 Total: -17.77 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.64 -8.81 -38.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161685621.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.727 kcal (2) G-P(sol) polarization free energy of solvation -29.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds