Wall clock time and date at job start Tue Mar 31 2020 19:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38780 * 119.89904 * 2 1 4 4 N 1.31773 * 120.11557 * 179.97438 * 3 2 1 5 5 C 1.33031 * 119.93240 * 0.02562 * 4 3 2 6 6 C 1.48147 * 120.09676 * 180.02562 * 5 4 3 7 7 O 1.21513 * 119.99726 * 186.91005 * 6 5 4 8 8 N 1.34776 * 120.00200 * 6.91092 * 6 5 4 9 9 C 1.46512 * 119.99620 * 356.67871 * 8 6 5 10 10 C 1.50702 * 109.46983 * 277.18589 * 9 8 6 11 11 H 1.08003 * 119.99838 * 0.02562 * 10 9 8 12 12 C 1.37871 * 119.99857 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00038 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99756 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.46720 * 90.00448 * 14 12 10 16 16 H 1.48502 * 109.47176 * 209.99945 * 14 12 10 17 17 H 1.48497 * 109.47203 * 330.00280 * 14 12 10 18 18 C 1.46491 * 120.00442 * 176.67671 * 8 6 5 19 19 C 1.52995 * 109.47287 * 89.99830 * 18 8 6 20 20 N 1.46902 * 109.47431 * 180.02562 * 19 18 8 21 21 C 1.47018 * 111.00171 * 293.63880 * 20 19 18 22 22 C 1.53089 * 109.25882 * 177.60438 * 21 20 19 23 23 O 1.43024 * 109.25913 * 56.84947 * 22 21 20 24 24 C 1.43014 * 113.73478 * 301.32749 * 23 22 21 25 25 C 1.47011 * 111.00060 * 169.99812 * 20 19 18 26 26 C 1.39401 * 119.80682 * 0.27511 * 5 4 3 27 27 N 1.32101 * 119.90484 * 179.97438 * 2 1 3 28 28 H 1.08995 * 109.46819 * 90.00068 * 1 2 3 29 29 H 1.09000 * 109.46500 * 209.99634 * 1 2 3 30 30 H 1.09000 * 109.47207 * 330.00007 * 1 2 3 31 31 H 1.07999 * 119.94207 * 359.97438 * 3 2 1 32 32 H 1.08998 * 109.47284 * 37.18782 * 9 8 6 33 33 H 1.09000 * 109.46438 * 157.19242 * 9 8 6 34 34 H 0.97000 * 119.99448 * 180.02562 * 13 12 10 35 35 H 1.09001 * 109.47619 * 210.00289 * 18 8 6 36 36 H 1.09000 * 109.46991 * 330.00091 * 18 8 6 37 37 H 1.08998 * 109.47430 * 300.00303 * 19 18 8 38 38 H 1.09000 * 109.46891 * 60.00200 * 19 18 8 39 39 H 1.08997 * 109.50006 * 297.54269 * 21 20 19 40 40 H 1.08998 * 109.50438 * 57.67105 * 21 20 19 41 41 H 1.09002 * 109.50853 * 296.91535 * 22 21 20 42 42 H 1.08994 * 109.54693 * 176.80094 * 22 21 20 43 43 H 1.08996 * 109.50976 * 298.73198 * 24 23 22 44 44 H 1.09003 * 109.54319 * 178.62586 * 24 23 22 45 45 H 1.08995 * 109.51103 * 302.32814 * 25 20 19 46 46 H 1.09004 * 109.50310 * 62.42168 * 25 20 19 47 47 H 1.08002 * 120.05974 * 179.70441 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1988 1.2031 0.0000 4 7 3.5166 1.2081 0.0005 5 6 4.1847 0.0577 0.0005 6 6 5.6662 0.0591 0.0017 7 8 6.2747 -0.9850 -0.1250 8 7 6.3389 1.2183 0.1431 9 6 5.6070 2.4850 0.2227 10 6 5.2740 2.9609 -1.1679 11 1 5.5769 2.3780 -2.0251 12 6 4.5827 4.1405 -1.3457 13 7 4.2143 4.8505 -0.3018 14 14 4.1707 4.7308 -3.0694 15 1 2.8510 4.1853 -3.4771 16 1 4.1191 6.2148 -3.0853 17 1 5.2142 4.2615 -4.0160 18 6 7.8020 1.2119 0.2174 19 6 8.3847 1.3421 -1.1912 20 7 9.8518 1.3350 -1.1168 21 6 10.3502 2.5339 -0.4271 22 6 11.8754 2.4570 -0.3191 23 8 12.4343 2.3136 -1.6278 24 6 11.9710 1.1558 -2.3279 25 6 10.4467 1.2194 -2.4562 26 6 3.4868 -1.1490 -0.0058 27 7 2.1657 -1.1451 0.0005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3632 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6563 2.1369 -0.0004 32 1 4.6859 2.3376 0.7866 33 1 6.2245 3.2305 0.7237 34 1 3.7277 5.6802 -0.4270 35 1 8.1385 2.0493 0.8287 36 1 8.1389 0.2769 0.6650 37 1 8.0483 0.5047 -1.8025 38 1 8.0478 2.2771 -1.6388 39 1 10.0696 3.4222 -0.9929 40 1 9.9168 2.5857 0.5717 41 1 12.1542 1.5984 0.2918 42 1 12.2549 3.3694 0.1406 43 1 12.2527 0.2594 -1.7755 44 1 12.4190 1.1268 -3.3212 45 1 10.0839 0.3119 -2.9386 46 1 10.1672 2.0865 -3.0547 47 1 4.0251 -2.0853 -0.0107 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161685621.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:04 Heat of formation + Delta-G solvation = -22.472740 kcal Electronic energy + Delta-G solvation = -29681.325551 eV Core-core repulsion = 25671.615988 eV Total energy + Delta-G solvation = -4009.709563 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.28178 -40.76343 -40.19066 -37.49416 -36.53617 -35.33872 -34.44724 -33.73496 -32.22488 -31.25546 -29.40927 -28.96700 -27.15568 -25.52130 -25.15672 -25.01179 -24.20727 -23.14516 -21.38289 -20.84539 -18.89303 -18.66763 -18.02983 -17.60754 -17.16643 -17.10875 -16.69752 -16.48912 -16.42478 -16.29250 -15.99424 -15.75844 -15.63148 -15.21555 -14.82328 -14.53633 -14.29299 -14.06232 -13.77145 -13.62178 -13.61544 -13.41510 -13.15426 -13.14448 -12.88537 -12.82827 -12.56692 -12.33614 -12.20438 -12.09539 -11.96795 -11.71743 -11.61307 -11.43916 -11.26527 -10.71109 -10.50267 -10.19142 -9.71747 -9.52608 -9.39940 -8.08155 -6.12502 -0.55219 0.16342 1.34469 1.38871 1.44601 1.70022 2.05170 2.42782 2.76781 2.81836 2.95727 3.08712 3.22218 3.25402 3.47127 3.72093 3.83908 3.91139 3.99854 4.07347 4.10240 4.17759 4.19157 4.31479 4.39297 4.45005 4.54967 4.56799 4.69567 4.76228 4.78814 4.79966 4.84790 4.87928 4.88744 5.01354 5.01807 5.08924 5.37817 5.50815 5.78815 5.84861 5.89359 5.90655 6.15667 6.23139 6.27688 6.44336 6.76162 6.93039 7.17128 7.50471 8.99255 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011938 B = 0.003808 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.902726 B = 7351.826478 C = 8916.815538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.101 3.899 3 C 0.033 3.967 4 N -0.365 5.365 5 C -0.006 4.006 6 C 0.568 3.432 7 O -0.576 6.576 8 N -0.579 5.579 9 C 0.245 3.755 10 C -0.496 4.496 11 H 0.030 0.970 12 C 0.038 3.962 13 N -0.910 5.910 14 Si 0.929 3.071 15 H -0.275 1.275 16 H -0.282 1.282 17 H -0.285 1.285 18 C 0.129 3.871 19 C 0.061 3.939 20 N -0.534 5.534 21 C 0.011 3.989 22 C 0.068 3.932 23 O -0.404 6.404 24 C 0.069 3.931 25 C 0.015 3.985 26 C 0.108 3.892 27 N -0.459 5.459 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.181 0.819 32 H 0.075 0.925 33 H 0.007 0.993 34 H 0.263 0.737 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.058 0.942 38 H 0.025 0.975 39 H 0.028 0.972 40 H 0.095 0.905 41 H 0.070 0.930 42 H 0.116 0.884 43 H 0.068 0.932 44 H 0.117 0.883 45 H 0.090 0.910 46 H 0.028 0.972 47 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.737 -6.236 1.126 6.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.040 4.040 3 C -0.130 4.130 4 N -0.081 5.081 5 C -0.145 4.145 6 C 0.355 3.645 7 O -0.458 6.458 8 N -0.307 5.307 9 C 0.125 3.875 10 C -0.536 4.536 11 H 0.049 0.951 12 C -0.162 4.162 13 N -0.550 5.550 14 Si 0.757 3.243 15 H -0.201 1.201 16 H -0.207 1.207 17 H -0.211 1.211 18 C 0.005 3.995 19 C -0.068 4.068 20 N -0.259 5.259 21 C -0.117 4.117 22 C -0.008 4.008 23 O -0.323 6.323 24 C -0.007 4.007 25 C -0.114 4.114 26 C -0.052 4.052 27 N -0.175 5.175 28 H 0.116 0.884 29 H 0.108 0.892 30 H 0.121 0.879 31 H 0.198 0.802 32 H 0.092 0.908 33 H 0.025 0.975 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.077 0.923 38 H 0.043 0.957 39 H 0.046 0.954 40 H 0.113 0.887 41 H 0.088 0.912 42 H 0.134 0.866 43 H 0.087 0.913 44 H 0.135 0.865 45 H 0.108 0.892 46 H 0.046 0.954 47 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 3.312 -6.865 1.326 7.737 hybrid contribution -0.776 1.321 -1.543 2.174 sum 2.536 -5.544 -0.216 6.100 Atomic orbital electron populations 1.20865 0.84323 1.05446 1.04798 1.23262 1.00467 0.88964 0.91356 1.24267 0.90635 1.00253 0.97852 1.69392 1.09074 1.26530 1.03119 1.22100 0.95619 0.91715 1.05052 1.17929 0.86077 0.83573 0.76923 1.90670 1.69276 1.32241 1.53589 1.48218 1.06897 1.08056 1.67565 1.19781 0.92466 0.78074 0.97162 1.21181 1.34838 1.05595 0.91943 0.95143 1.25191 0.95794 0.96632 0.98558 1.69981 1.39859 1.15252 1.29895 0.86023 0.78449 0.77621 0.82235 1.20116 1.20706 1.21117 1.21347 0.78699 1.02987 0.96422 1.22187 0.86957 0.99809 0.97811 1.62234 1.05723 1.39005 1.18952 1.22942 0.97781 0.90644 1.00361 1.22770 0.90137 1.03611 0.84300 1.87941 1.68090 1.46446 1.29810 1.22751 0.91026 0.88457 0.98489 1.22867 0.97215 1.01655 0.89618 1.23778 0.90495 0.98729 0.92175 1.68518 1.07681 1.29486 1.11818 0.88424 0.89195 0.87878 0.80198 0.90785 0.97475 0.92812 0.89881 0.89865 0.92338 0.95703 0.95409 0.88728 0.91210 0.86562 0.91341 0.86466 0.89163 0.95353 0.79775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.73 10.19 71.24 0.73 -1.01 16 2 C 0.10 2.90 6.79 42.65 0.29 3.19 16 3 C 0.03 1.13 10.88 84.83 0.92 2.05 16 4 N -0.36 -15.19 5.19 -184.33 -0.96 -16.14 16 5 C -0.01 -0.23 6.61 41.88 0.28 0.04 16 6 C 0.57 24.52 7.59 86.88 0.66 25.18 16 7 O -0.58 -25.49 15.98 -3.76 -0.06 -25.55 16 8 N -0.58 -24.91 2.48 -829.23 -2.05 -26.96 16 9 C 0.25 11.78 4.81 85.63 0.41 12.19 16 10 C -0.50 -25.67 7.96 25.60 0.20 -25.46 16 11 H 0.03 1.67 7.81 -2.91 -0.02 1.65 16 12 C 0.04 1.98 5.46 84.65 0.46 2.44 16 13 N -0.91 -48.46 13.29 21.44 0.28 -48.17 16 14 Si 0.93 42.11 29.54 68.60 2.03 44.14 16 15 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 16 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 17 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 18 C 0.13 4.77 5.35 86.38 0.46 5.23 16 19 C 0.06 2.25 5.28 86.30 0.46 2.70 16 20 N -0.53 -16.14 4.73 -895.23 -4.23 -20.37 16 21 C 0.01 0.30 5.44 86.31 0.47 0.76 16 22 C 0.07 1.52 7.01 72.01 0.50 2.02 16 23 O -0.40 -10.21 10.83 -148.98 -1.61 -11.82 16 24 C 0.07 1.52 7.01 72.02 0.50 2.02 16 25 C 0.01 0.39 5.65 86.32 0.49 0.88 16 26 C 0.11 3.74 10.77 84.93 0.91 4.65 16 27 N -0.46 -14.57 10.41 -182.20 -1.90 -16.47 16 28 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.10 1.42 8.08 -2.39 -0.02 1.40 16 31 H 0.18 5.51 8.06 -2.91 -0.02 5.49 16 32 H 0.08 3.73 5.24 -2.69 -0.01 3.72 16 33 H 0.01 0.37 7.81 -2.39 -0.02 0.35 16 34 H 0.26 13.37 8.31 -92.71 -0.77 12.60 16 35 H 0.08 2.87 6.22 -2.39 -0.01 2.85 16 36 H 0.08 3.04 7.47 -2.39 -0.02 3.02 16 37 H 0.06 2.31 8.04 -2.39 -0.02 2.29 16 38 H 0.02 1.04 8.10 -2.39 -0.02 1.02 16 39 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.09 2.44 6.38 -2.39 -0.02 2.43 16 41 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.09 2.28 8.09 -2.39 -0.02 2.26 16 46 H 0.03 0.84 8.14 -2.38 -0.02 0.82 16 47 H 0.19 5.81 7.66 -2.91 -0.02 5.79 16 Total: -1.00 -64.16 382.98 0.22 -63.94 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.97 Total: 20.52 kcal Atomic # 6 Polarization: 29.15 SS G_CDS: 7.75 Total: 36.90 kcal Atomic # 7 Polarization: -119.26 SS G_CDS: -8.86 Total: -128.12 kcal Atomic # 8 Polarization: -35.70 SS G_CDS: -1.67 Total: -37.37 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -64.16 0.22 -63.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161685621.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.467 kcal (2) G-P(sol) polarization free energy of solvation -64.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds