Wall clock time and date at job start Tue Mar 31 2020 19:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 113.52750 * 2 1 4 4 C 1.56563 * 114.55593 * 134.20855 * 2 1 3 5 5 H 1.08996 * 114.55987 * 44.79742 * 4 2 1 6 6 N 1.46503 * 114.56060 * 271.04665 * 4 2 1 7 7 C 1.34774 * 120.00169 * 154.99841 * 6 4 2 8 8 O 1.21588 * 119.99689 * 0.02562 * 7 6 4 9 9 N 1.34776 * 120.00072 * 180.02562 * 7 6 4 10 10 C 1.40201 * 119.99849 * 180.02562 * 9 7 6 11 11 C 1.40401 * 125.97161 * 0.02562 * 10 9 7 12 12 C 1.35242 * 107.86248 * 179.73941 * 11 10 9 13 13 N 1.34959 * 107.86261 * 0.36699 * 12 11 10 14 14 C 1.46499 * 125.97918 * 179.89994 * 13 12 11 15 15 C 1.50703 * 109.47230 * 124.71174 * 14 13 12 16 16 H 1.07996 * 119.99837 * 359.97438 * 15 14 13 17 17 C 1.37871 * 119.99939 * 179.72761 * 15 14 13 18 18 N 1.31517 * 120.00257 * 0.27165 * 17 15 14 19 19 Si 1.86805 * 120.00366 * 180.27605 * 17 15 14 20 20 H 1.48499 * 109.47171 * 59.99303 * 19 17 15 21 21 H 1.48497 * 109.47432 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46893 * 300.00005 * 19 17 15 23 23 N 1.31204 * 125.96987 * 179.97438 * 10 9 7 24 24 C 1.50337 * 81.31051 * 157.94476 * 4 2 1 25 25 H 1.08998 * 114.28524 * 71.05906 * 24 4 2 26 26 C 1.52127 * 127.03929 * 226.66250 * 24 4 2 27 27 C 1.55779 * 101.78923 * 119.06442 * 26 24 4 28 28 O 1.46072 * 105.44944 * 353.09922 * 27 26 24 29 29 C 1.40079 * 103.54089 * 329.95710 * 28 27 26 30 30 H 1.09002 * 110.76674 * 293.94527 * 29 28 27 31 31 H 1.08995 * 109.47204 * 285.78683 * 1 2 3 32 32 H 1.08998 * 109.47160 * 45.78992 * 1 2 3 33 33 H 1.09006 * 109.46818 * 165.78844 * 1 2 3 34 34 H 1.08999 * 109.46997 * 207.51546 * 3 2 1 35 35 H 1.08996 * 109.47023 * 327.51566 * 3 2 1 36 36 H 1.09003 * 109.47120 * 87.51422 * 3 2 1 37 37 H 0.96998 * 119.99975 * 335.00282 * 6 4 2 38 38 H 0.96998 * 120.00071 * 0.02562 * 9 7 6 39 39 H 1.07999 * 126.06623 * 359.96521 * 11 10 9 40 40 H 1.08002 * 126.06768 * 180.26170 * 12 11 10 41 41 H 1.09003 * 109.47221 * 4.71144 * 14 13 12 42 42 H 1.08999 * 109.47163 * 244.70825 * 14 13 12 43 43 H 0.96998 * 120.00309 * 180.02562 * 18 17 15 44 44 H 1.08996 * 111.50726 * 0.81229 * 26 24 4 45 45 H 1.08993 * 110.73856 * 236.98096 * 26 24 4 46 46 H 1.08999 * 110.25079 * 234.10328 * 27 26 24 47 47 H 1.09000 * 110.24828 * 112.09224 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1408 1.4029 0.0000 4 6 2.1807 -0.9929 1.0208 5 1 1.7291 -1.9848 1.0386 6 7 2.4116 -0.4312 2.3540 7 6 2.4764 -1.2452 3.4262 8 8 2.3436 -2.4457 3.2870 9 7 2.6883 -0.7283 4.6528 10 6 2.7562 -1.5751 5.7681 11 6 2.6221 -2.9726 5.7519 12 6 2.7545 -3.4168 7.0224 13 7 2.9563 -2.3447 7.8169 14 6 3.1478 -2.3734 9.2690 15 6 4.4394 -1.6804 9.6192 16 1 5.0561 -1.2609 8.8382 17 6 4.8312 -1.5774 10.9371 18 7 4.0804 -2.0886 11.8882 19 14 6.4283 -0.7116 11.3719 20 1 6.3716 0.6964 10.9034 21 1 6.6195 -0.7356 12.8443 22 1 7.5634 -1.4070 10.7135 23 7 2.9571 -1.2002 7.0093 24 6 3.3391 -0.8498 0.0733 25 1 3.8319 0.1217 0.1113 26 6 4.1920 -1.9679 -0.5069 27 6 3.9380 -1.8020 -2.0348 28 8 2.8948 -0.7857 -2.1477 29 6 2.1504 -0.9478 -0.9722 30 1 1.6452 -1.9136 -0.9647 31 1 -0.3633 0.2796 0.9889 32 1 -0.3633 0.7166 -0.7366 33 1 -0.3633 -0.9963 -0.2523 34 1 3.1215 1.3721 -0.4748 35 1 1.4910 2.0820 -0.5519 36 1 2.2450 1.7538 1.0267 37 1 2.5178 0.5265 2.4650 38 1 2.7938 0.2295 4.7639 39 1 2.4480 -3.5846 4.8792 40 1 2.7055 -4.4466 7.3443 41 1 3.1865 -3.4080 9.6100 42 1 2.3174 -1.8614 9.7552 43 1 4.3558 -2.0159 12.8154 44 1 3.8573 -2.9461 -0.1616 45 1 5.2444 -1.8135 -0.2692 46 1 3.5958 -2.7433 -2.4648 47 1 4.8470 -1.4666 -2.5341 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173338400.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:18 Heat of formation + Delta-G solvation = 80.766559 kcal Electronic energy + Delta-G solvation = -28628.728615 eV Core-core repulsion = 24623.495843 eV Total energy + Delta-G solvation = -4005.232771 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.29473 -42.15087 -40.65227 -37.98025 -36.17330 -35.29780 -34.53643 -32.86545 -32.49995 -30.91521 -29.92042 -28.76372 -28.55005 -25.81480 -24.81781 -24.19480 -22.85587 -21.92535 -21.41906 -21.15196 -20.21952 -19.14053 -18.68395 -18.32144 -17.75553 -16.95418 -16.81551 -16.58162 -16.30394 -16.05315 -15.79258 -15.62221 -15.45786 -15.11243 -14.76753 -14.46145 -14.24739 -14.00473 -13.78585 -13.66989 -13.46612 -13.16617 -12.94912 -12.88607 -12.72019 -12.56376 -12.41902 -12.28755 -12.26576 -12.07307 -11.74578 -11.66418 -11.60933 -11.38871 -11.12188 -10.83301 -10.71044 -10.15324 -10.02421 -9.70184 -9.03711 -8.31644 -6.45949 1.07474 1.13794 1.38866 1.40788 1.49597 1.70807 1.97996 2.20269 2.37185 2.40166 2.99739 3.00439 3.15225 3.40190 3.60294 3.86311 3.96896 3.98993 4.08009 4.22946 4.29146 4.31532 4.43633 4.50112 4.51604 4.72714 4.78665 4.82867 4.84601 4.91554 4.95912 4.96896 4.97398 5.01931 5.05454 5.11093 5.13953 5.20537 5.33176 5.36683 5.50675 5.57640 5.77841 5.89248 5.90827 5.99292 6.30798 6.64604 6.76864 7.16270 7.23886 7.43689 8.75528 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021722 B = 0.002129 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.728910 B =13145.792733 C =13330.426302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.042 4.042 3 C -0.135 4.135 4 C 0.166 3.834 5 H 0.117 0.883 6 N -0.706 5.706 7 C 0.714 3.286 8 O -0.599 6.599 9 N -0.636 5.636 10 C 0.285 3.715 11 C -0.292 4.292 12 C 0.055 3.945 13 N -0.346 5.346 14 C 0.273 3.727 15 C -0.547 4.547 16 H 0.052 0.948 17 C 0.018 3.982 18 N -0.921 5.921 19 Si 0.971 3.029 20 H -0.273 1.273 21 H -0.274 1.274 22 H -0.270 1.270 23 N -0.348 5.348 24 C -0.198 4.198 25 H 0.132 0.868 26 C -0.143 4.143 27 C 0.047 3.953 28 O -0.371 6.371 29 C 0.026 3.974 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.412 0.588 38 H 0.420 0.580 39 H 0.167 0.833 40 H 0.200 0.800 41 H 0.058 0.942 42 H 0.021 0.979 43 H 0.272 0.728 44 H 0.072 0.928 45 H 0.079 0.921 46 H 0.074 0.926 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.017 4.454 -27.804 28.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.043 4.043 3 C -0.192 4.192 4 C 0.060 3.940 5 H 0.134 0.866 6 N -0.362 5.362 7 C 0.414 3.586 8 O -0.477 6.477 9 N -0.288 5.288 10 C 0.029 3.971 11 C -0.323 4.323 12 C -0.093 4.093 13 N -0.128 5.128 14 C 0.154 3.846 15 C -0.585 4.585 16 H 0.071 0.929 17 C -0.182 4.182 18 N -0.559 5.559 19 Si 0.795 3.205 20 H -0.198 1.198 21 H -0.198 1.198 22 H -0.195 1.195 23 N -0.179 5.179 24 C -0.217 4.217 25 H 0.149 0.851 26 C -0.181 4.181 27 C -0.028 4.028 28 O -0.289 6.289 29 C -0.034 4.034 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.250 0.750 38 H 0.258 0.742 39 H 0.184 0.816 40 H 0.217 0.783 41 H 0.076 0.924 42 H 0.039 0.961 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.097 0.903 46 H 0.093 0.907 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.982 4.475 -27.040 27.696 hybrid contribution 0.746 0.210 0.349 0.850 sum -3.236 4.685 -26.691 27.291 Atomic orbital electron populations 1.21805 0.92217 1.02827 1.02845 1.22120 0.96186 0.95130 0.90907 1.21821 1.01395 0.92698 1.03239 1.22517 0.95868 0.98114 0.77492 0.86564 1.44802 1.76546 1.10179 1.04686 1.15788 0.77548 0.85316 0.79937 1.90829 1.57698 1.14413 1.84779 1.41391 1.74650 1.10058 1.02685 1.19079 1.00488 0.90692 0.86808 1.21676 1.19631 0.93084 0.97885 1.23151 1.00290 0.95222 0.90654 1.48814 1.52952 1.02748 1.08264 1.19321 0.96857 0.98694 0.69696 1.21374 1.06063 1.38127 0.92981 0.92941 1.25740 1.01035 0.95867 0.95589 1.69988 1.39487 1.45513 1.00955 0.85413 0.78835 0.78902 0.77356 1.19810 1.19827 1.19497 1.77242 1.30259 1.10232 1.00129 1.25204 0.95775 1.01708 0.99059 0.85055 1.22406 1.01321 0.99000 0.95334 1.24304 0.90963 0.91749 0.95796 1.88463 1.42948 1.57077 1.40442 1.23770 0.96686 0.99579 0.83321 0.89469 0.91589 0.90983 0.92149 0.91094 0.90620 0.90613 0.74957 0.74242 0.81562 0.78324 0.92413 0.96087 0.91848 0.90969 0.90253 0.90727 0.87924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.36 71.98 0.67 -0.90 16 2 C -0.04 -0.52 1.52 -60.06 -0.09 -0.61 16 3 C -0.13 -1.26 8.59 71.98 0.62 -0.65 16 4 C 0.17 2.69 3.68 36.66 0.13 2.83 16 5 H 0.12 2.32 6.91 -2.39 -0.02 2.30 16 6 N -0.71 -12.39 5.38 -499.62 -2.69 -15.08 16 7 C 0.71 19.51 8.53 179.06 1.53 21.04 16 8 O -0.60 -20.52 13.06 -3.99 -0.05 -20.57 16 9 N -0.64 -18.80 5.46 -321.24 -1.75 -20.55 16 10 C 0.29 11.33 8.11 133.31 1.08 12.41 16 11 C -0.29 -11.46 9.61 22.11 0.21 -11.25 16 12 C 0.06 2.19 11.43 83.52 0.96 3.15 16 13 N -0.35 -16.31 3.67 -351.84 -1.29 -17.60 16 14 C 0.27 14.21 6.26 85.63 0.54 14.75 16 15 C -0.55 -30.91 9.24 25.60 0.24 -30.67 16 16 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 17 C 0.02 1.00 5.46 84.65 0.46 1.46 16 18 N -0.92 -52.22 13.29 21.45 0.28 -51.94 16 19 Si 0.97 43.51 29.54 68.60 2.03 45.54 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 21 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 23 N -0.35 -16.13 12.42 -54.43 -0.68 -16.80 16 24 C -0.20 -2.95 4.11 -17.87 -0.07 -3.03 16 25 H 0.13 1.78 5.33 -2.39 -0.01 1.77 16 26 C -0.14 -2.10 6.88 31.27 0.22 -1.88 16 27 C 0.05 0.61 7.76 72.94 0.57 1.18 16 28 O -0.37 -6.42 11.46 -141.44 -1.62 -8.04 16 29 C 0.03 0.38 4.01 22.70 0.09 0.47 16 30 H 0.09 1.31 7.40 -2.39 -0.02 1.29 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 0.69 8.00 -2.39 -0.02 0.67 16 33 H 0.06 0.70 7.94 -2.38 -0.02 0.68 16 34 H 0.07 0.74 6.02 -2.39 -0.01 0.73 16 35 H 0.07 0.63 7.91 -2.39 -0.02 0.61 16 36 H 0.08 0.51 6.50 -2.39 -0.02 0.49 16 37 H 0.41 4.79 7.04 -92.71 -0.65 4.14 16 38 H 0.42 9.77 8.84 -92.71 -0.82 8.95 16 39 H 0.17 6.37 5.91 -2.91 -0.02 6.35 16 40 H 0.20 6.26 8.06 -2.91 -0.02 6.23 16 41 H 0.06 2.94 8.07 -2.39 -0.02 2.92 16 42 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 44 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -71.22 379.03 0.92 -70.30 By element: Atomic # 1 Polarization: 26.88 SS G_CDS: -0.46 Total: 26.43 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 7.15 Total: 8.31 kcal Atomic # 7 Polarization: -115.85 SS G_CDS: -6.12 Total: -121.96 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -1.67 Total: -28.61 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -71.22 0.92 -70.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173338400.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.064 kcal (2) G-P(sol) polarization free energy of solvation -71.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds