Wall clock time and date at job start Tue Mar 31 2020 19:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 113.57401 * 2 1 4 4 C 1.56540 * 114.57810 * 134.31159 * 2 1 3 5 5 H 1.09000 * 114.54102 * 270.77718 * 4 2 1 6 6 N 1.46501 * 114.50028 * 44.37902 * 4 2 1 7 7 C 1.34774 * 120.00443 * 175.49181 * 6 4 2 8 8 O 1.21599 * 119.99483 * 0.02562 * 7 6 4 9 9 N 1.34770 * 120.00285 * 180.27700 * 7 6 4 10 10 C 1.40200 * 120.00129 * 179.72609 * 9 7 6 11 11 C 1.40399 * 125.96856 * 359.97438 * 10 9 7 12 12 C 1.35246 * 107.86494 * 179.97438 * 11 10 9 13 13 N 1.34963 * 107.86150 * 0.02562 * 12 11 10 14 14 C 1.46497 * 125.97848 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.46975 * 124.99729 * 14 13 12 16 16 H 1.08003 * 120.00485 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00020 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99889 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 119.99871 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.46902 * 90.00531 * 19 17 15 21 21 H 1.48496 * 109.46931 * 210.00094 * 19 17 15 22 22 H 1.48499 * 109.47347 * 330.00280 * 19 17 15 23 23 N 1.31209 * 125.97359 * 179.68956 * 10 9 7 24 24 C 1.50653 * 81.68110 * 157.57796 * 4 2 1 25 25 H 1.09003 * 114.94261 * 73.99341 * 24 4 2 26 26 C 1.52686 * 126.48728 * 228.88298 * 24 4 2 27 27 C 1.56140 * 100.00841 * 126.36788 * 26 24 4 28 28 O 1.45505 * 105.72870 * 336.73695 * 27 26 24 29 29 C 1.38975 * 106.82052 * 347.65423 * 28 27 26 30 30 H 1.08997 * 109.73975 * 283.74444 * 29 28 27 31 31 H 1.09004 * 109.47108 * 285.69181 * 1 2 3 32 32 H 1.08999 * 109.47212 * 45.68344 * 1 2 3 33 33 H 1.08994 * 109.47333 * 165.69003 * 1 2 3 34 34 H 1.09001 * 109.47312 * 204.34277 * 3 2 1 35 35 H 1.09000 * 109.47328 * 324.34423 * 3 2 1 36 36 H 1.09002 * 109.47078 * 84.34465 * 3 2 1 37 37 H 0.97003 * 119.99645 * 355.49293 * 6 4 2 38 38 H 0.97003 * 120.00334 * 359.72465 * 9 7 6 39 39 H 1.08000 * 126.07404 * 359.97438 * 11 10 9 40 40 H 1.08004 * 126.07252 * 180.02562 * 12 11 10 41 41 H 1.08991 * 109.46982 * 244.99476 * 14 13 12 42 42 H 1.08999 * 109.46848 * 4.99884 * 14 13 12 43 43 H 0.97002 * 120.00039 * 180.02562 * 18 17 15 44 44 H 1.08995 * 111.29842 * 244.06207 * 26 24 4 45 45 H 1.09000 * 111.29479 * 8.67362 * 26 24 4 46 46 H 1.09000 * 110.20170 * 95.80119 * 27 26 24 47 47 H 1.09004 * 110.19722 * 217.59473 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1419 1.4023 0.0000 4 6 2.1811 -0.9944 1.0186 5 1 2.3571 -0.5765 2.0098 6 7 1.5673 -2.3244 1.0462 7 6 2.0973 -3.2954 1.8161 8 8 3.0847 -3.0674 2.4881 9 7 1.5359 -4.5205 1.8371 10 6 2.0906 -5.5322 2.6336 11 6 3.2233 -5.4081 3.4538 12 6 3.4334 -6.6016 4.0544 13 7 2.4734 -7.4516 3.6332 14 6 2.3261 -8.8520 4.0373 15 6 0.9399 -9.0736 4.5852 16 1 0.2385 -8.2534 4.6277 17 6 0.5669 -10.3234 5.0322 18 7 -0.6431 -10.5168 5.5099 19 14 1.7797 -11.7422 4.9580 20 1 2.5572 -11.7953 6.2221 21 1 1.0396 -13.0170 4.7783 22 1 2.7062 -11.5423 3.8149 23 7 1.6389 -6.7589 2.7467 24 6 3.3435 -0.8624 0.0695 25 1 3.8825 0.0830 0.1314 26 6 4.1537 -2.0051 -0.5382 27 6 4.0352 -1.6460 -2.0532 28 8 2.8354 -0.8315 -2.1727 29 6 2.1497 -0.9465 -0.9695 30 1 1.6441 -1.9111 -0.9246 31 1 -0.3633 0.2780 0.9894 32 1 -0.3633 0.7179 -0.7353 33 1 -0.3634 -0.9957 -0.2540 34 1 3.1453 1.3609 -0.4236 35 1 1.5219 2.0693 -0.5990 36 1 2.1944 1.7758 1.0227 37 1 0.7794 -2.5061 0.5103 38 1 0.7480 -4.7023 1.3013 39 1 3.8209 -4.5178 3.5824 40 1 4.2282 -6.8333 4.7480 41 1 2.4829 -9.4978 3.1734 42 1 3.0625 -9.0878 4.8056 43 1 -0.9054 -11.3960 5.8247 44 1 5.1909 -1.9762 -0.2044 45 1 3.6978 -2.9715 -0.3235 46 1 4.9086 -1.0789 -2.3750 47 1 3.9361 -2.5537 -2.6484 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173338416.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:23 Heat of formation + Delta-G solvation = 121.402448 kcal Electronic energy + Delta-G solvation = -29109.798644 eV Core-core repulsion = 25106.327978 eV Total energy + Delta-G solvation = -4003.470667 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.85611 -40.69704 -39.35431 -37.27302 -34.76337 -33.85231 -33.16331 -32.06964 -31.13811 -29.43087 -29.22195 -28.05455 -27.08045 -25.10164 -23.49830 -22.95353 -21.96906 -20.67218 -20.24659 -19.90183 -19.09538 -18.18705 -17.14299 -17.09569 -16.73284 -16.14117 -16.07944 -15.31490 -15.17635 -14.87125 -14.71134 -14.34701 -14.32283 -13.94986 -13.69950 -13.59756 -13.08194 -13.00071 -12.63121 -12.54002 -12.32500 -12.20134 -12.18711 -11.96930 -11.75359 -11.67490 -11.17108 -11.14671 -10.80017 -10.77791 -10.65385 -10.16116 -10.01013 -9.98421 -9.77582 -9.56301 -9.52020 -9.10090 -8.77037 -8.18722 -7.49704 -6.23920 -4.26136 2.18496 2.56587 2.70428 3.01337 3.14795 3.21911 3.22544 3.40890 3.63124 3.74219 4.04520 4.15507 4.22577 4.33963 4.46111 4.52324 4.77374 4.88734 4.94214 5.03881 5.08371 5.15129 5.23643 5.33793 5.38619 5.41231 5.46781 5.48175 5.52846 5.63436 5.67463 5.69389 5.82399 5.85754 5.95052 6.11391 6.23086 6.32708 6.44959 6.55330 6.70296 6.72669 6.89024 7.27011 7.40895 7.80086 7.84255 8.33412 8.51069 8.57698 8.86051 9.31120 10.88807 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.024839 B = 0.002287 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.999024 B =12239.294828 C =12588.325401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.052 4.052 3 C -0.130 4.130 4 C 0.175 3.825 5 H 0.104 0.896 6 N -0.727 5.727 7 C 0.716 3.284 8 O -0.558 6.558 9 N -0.643 5.643 10 C 0.278 3.722 11 C -0.281 4.281 12 C 0.050 3.950 13 N -0.320 5.320 14 C 0.232 3.768 15 C -0.534 4.534 16 H 0.086 0.914 17 C 0.076 3.924 18 N -0.888 5.888 19 Si 0.873 3.127 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.264 1.264 23 N -0.299 5.299 24 C -0.194 4.194 25 H 0.131 0.869 26 C -0.133 4.133 27 C 0.053 3.947 28 O -0.363 6.363 29 C 0.030 3.970 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.399 0.601 38 H 0.407 0.593 39 H 0.163 0.837 40 H 0.168 0.832 41 H 0.041 0.959 42 H 0.049 0.951 43 H 0.268 0.732 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.080 0.920 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.272 22.313 -13.024 26.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.053 4.053 3 C -0.187 4.187 4 C 0.068 3.932 5 H 0.122 0.878 6 N -0.385 5.385 7 C 0.415 3.585 8 O -0.433 6.433 9 N -0.293 5.293 10 C 0.024 3.976 11 C -0.313 4.313 12 C -0.099 4.099 13 N -0.102 5.102 14 C 0.113 3.887 15 C -0.572 4.572 16 H 0.104 0.896 17 C -0.128 4.128 18 N -0.525 5.525 19 Si 0.699 3.301 20 H -0.197 1.197 21 H -0.205 1.205 22 H -0.189 1.189 23 N -0.130 5.130 24 C -0.213 4.213 25 H 0.148 0.852 26 C -0.171 4.171 27 C -0.023 4.023 28 O -0.282 6.282 29 C -0.029 4.029 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.236 0.764 38 H 0.242 0.758 39 H 0.180 0.820 40 H 0.186 0.814 41 H 0.059 0.941 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.098 0.902 45 H 0.095 0.905 46 H 0.098 0.902 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.093 21.509 -12.842 26.036 hybrid contribution 0.332 -0.798 -0.104 0.870 sum 7.425 20.712 -12.946 25.528 Atomic orbital electron populations 1.21790 0.92965 1.02382 1.02823 1.22218 0.95765 0.95025 0.92305 1.21771 1.01284 0.92824 1.02793 1.21205 0.92172 0.81732 0.98065 0.87774 1.44844 1.33635 1.10489 1.49533 1.15522 0.82922 0.79599 0.80407 1.90883 1.26306 1.80703 1.45366 1.41361 1.32317 1.08222 1.47421 1.18768 0.94859 0.88382 0.95596 1.21525 1.03075 0.99901 1.06772 1.22556 0.95716 0.90639 1.00983 1.48593 1.18665 1.11060 1.31876 1.20035 0.99912 0.72868 0.95852 1.21112 0.96287 0.97912 1.41902 0.89646 1.24837 0.95325 0.98221 0.94404 1.69874 1.18196 1.23467 1.40986 0.86907 0.81555 0.82476 0.79167 1.19703 1.20547 1.18864 1.77391 1.17171 1.03293 1.15126 1.24977 0.95256 1.00975 1.00121 0.85196 1.22477 1.01611 0.98911 0.94071 1.24171 0.87090 0.94643 0.96383 1.87831 1.35578 1.70188 1.34601 1.24028 0.97189 0.98749 0.82921 0.90016 0.91340 0.91608 0.92326 0.90973 0.91407 0.91348 0.76437 0.75817 0.81983 0.81441 0.94079 0.93341 0.92186 0.90208 0.90541 0.90191 0.91366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 9.07 37.16 0.34 -0.49 16 2 C -0.05 -0.36 1.58 -165.08 -0.26 -0.62 16 3 C -0.13 -0.74 8.80 37.16 0.33 -0.41 16 4 C 0.17 1.52 3.84 -81.54 -0.31 1.21 16 5 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 6 N -0.73 -6.95 3.85 -72.70 -0.28 -7.23 16 7 C 0.72 9.90 7.69 -86.93 -0.67 9.23 16 8 O -0.56 -9.43 13.47 5.28 0.07 -9.35 16 9 N -0.64 -9.64 5.45 -15.51 -0.08 -9.73 16 10 C 0.28 5.46 8.11 -154.36 -1.25 4.21 16 11 C -0.28 -5.41 9.61 -39.83 -0.38 -5.79 16 12 C 0.05 0.96 11.44 -17.24 -0.20 0.77 16 13 N -0.32 -7.21 3.67 -62.57 -0.23 -7.44 16 14 C 0.23 5.48 5.33 -5.20 -0.03 5.46 16 15 C -0.53 -15.03 9.78 -34.44 -0.34 -15.37 16 16 H 0.09 2.73 8.06 -52.48 -0.42 2.30 16 17 C 0.08 2.12 5.47 -17.82 -0.10 2.03 16 18 N -0.89 -26.57 13.96 55.43 0.77 -25.79 16 19 Si 0.87 20.07 27.47 -169.99 -4.67 15.40 16 20 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.26 -5.75 6.54 56.52 0.37 -5.38 16 23 N -0.30 -6.78 12.42 31.44 0.39 -6.39 16 24 C -0.19 -1.70 4.26 -99.43 -0.42 -2.13 16 25 H 0.13 1.00 5.58 -51.93 -0.29 0.71 16 26 C -0.13 -1.28 6.68 -25.21 -0.17 -1.45 16 27 C 0.05 0.46 7.87 38.84 0.31 0.77 16 28 O -0.36 -3.78 11.34 -29.84 -0.34 -4.12 16 29 C 0.03 0.26 4.02 -40.01 -0.16 0.10 16 30 H 0.08 0.73 5.43 -51.93 -0.28 0.45 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.36 8.02 -51.93 -0.42 -0.06 16 33 H 0.06 0.32 6.79 -51.93 -0.35 -0.03 16 34 H 0.07 0.44 5.95 -51.93 -0.31 0.13 16 35 H 0.07 0.35 7.96 -51.93 -0.41 -0.06 16 36 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.40 2.90 6.28 -40.82 -0.26 2.65 16 38 H 0.41 4.98 8.84 -40.82 -0.36 4.62 16 39 H 0.16 3.04 5.91 -52.49 -0.31 2.73 16 40 H 0.17 2.53 8.06 -52.48 -0.42 2.11 16 41 H 0.04 0.97 7.20 -51.93 -0.37 0.59 16 42 H 0.05 1.04 7.50 -51.93 -0.39 0.65 16 43 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.08 0.88 7.00 -51.93 -0.36 0.52 16 46 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 371.63 15.07 5.60 5.60 Total: -1.00 -34.42 371.63 -8.75 -43.17 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -6.67 Total: 8.37 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -3.32 Total: -2.49 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: 0.57 Total: -56.57 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -0.27 Total: -13.47 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -4.67 Total: 15.40 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.42 -8.75 -43.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173338416.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.570 kcal (2) G-P(sol) polarization free energy of solvation -34.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds