Wall clock time and date at job start Tue Mar 31 2020 19:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 112.79385 * 2 1 4 4 C 1.53647 * 113.53754 * 228.94535 * 2 1 3 5 5 H 1.09006 * 113.53181 * 106.10445 * 4 2 1 6 6 N 1.46491 * 113.53807 * 335.45587 * 4 2 1 7 7 C 1.34776 * 120.00706 * 157.48108 * 6 4 2 8 8 O 1.21599 * 119.99703 * 0.02562 * 7 6 4 9 9 N 1.34770 * 120.00642 * 179.97438 * 7 6 4 10 10 C 1.40199 * 120.00369 * 180.02562 * 9 7 6 11 11 C 1.40396 * 125.96716 * 359.71701 * 10 9 7 12 12 C 1.35252 * 107.86358 * 179.83096 * 11 10 9 13 13 N 1.34959 * 107.85857 * 0.42626 * 12 11 10 14 14 C 1.46496 * 125.97840 * 179.70332 * 13 12 11 15 15 C 1.50700 * 109.47289 * 125.00433 * 14 13 12 16 16 H 1.08003 * 119.99953 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00583 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00296 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 119.99743 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.46696 * 90.00316 * 19 17 15 21 21 H 1.48504 * 109.47315 * 210.00367 * 19 17 15 22 22 H 1.48504 * 109.47116 * 330.00587 * 19 17 15 23 23 N 1.31206 * 125.97535 * 180.02562 * 10 9 7 24 24 C 1.53746 * 87.57753 * 220.77749 * 4 2 1 25 25 H 1.09000 * 116.81663 * 265.40393 * 24 4 2 26 26 C 1.54497 * 112.85967 * 128.21829 * 24 4 2 27 27 C 1.54453 * 104.13604 * 267.07246 * 26 24 4 28 28 O 1.44402 * 104.80172 * 24.13261 * 27 26 24 29 29 C 1.44251 * 105.40317 * 319.41915 * 28 27 26 30 30 H 1.08994 * 114.89639 * 271.32129 * 29 28 27 31 31 H 1.08999 * 109.47224 * 308.55361 * 1 2 3 32 32 H 1.09006 * 109.46543 * 68.54967 * 1 2 3 33 33 H 1.08999 * 109.47090 * 188.54507 * 1 2 3 34 34 H 1.09001 * 109.47543 * 171.45037 * 3 2 1 35 35 H 1.09001 * 109.47049 * 291.44963 * 3 2 1 36 36 H 1.09008 * 109.47409 * 51.45058 * 3 2 1 37 37 H 0.97011 * 120.00250 * 337.48313 * 6 4 2 38 38 H 0.97008 * 119.99960 * 0.02562 * 9 7 6 39 39 H 1.07996 * 126.07202 * 0.02562 * 11 10 9 40 40 H 1.08001 * 126.06817 * 180.14132 * 12 11 10 41 41 H 1.09000 * 109.47584 * 245.00689 * 14 13 12 42 42 H 1.08999 * 109.47015 * 5.00943 * 14 13 12 43 43 H 0.97003 * 119.99761 * 179.97438 * 18 17 15 44 44 H 1.09001 * 110.49214 * 25.73778 * 26 24 4 45 45 H 1.08995 * 110.49410 * 148.40503 * 26 24 4 46 46 H 1.09001 * 110.36890 * 142.96169 * 27 26 24 47 47 H 1.08993 * 110.37263 * 265.18888 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1228 1.4105 0.0000 4 6 2.1436 -0.9252 -1.0622 5 1 2.5716 -0.3904 -1.9103 6 7 1.2572 -2.0185 -1.4682 7 6 1.4329 -2.6213 -2.6608 8 8 2.3276 -2.2578 -3.3997 9 7 0.6178 -3.6275 -3.0340 10 6 0.8010 -4.2548 -4.2744 11 6 1.7846 -3.9340 -5.2234 12 6 1.6310 -4.7668 -6.2780 13 7 0.5854 -5.5787 -6.0152 14 6 0.0693 -6.6296 -6.8958 15 6 0.0414 -7.9398 -6.1517 16 1 0.3744 -7.9850 -5.1253 17 6 -0.4092 -9.0808 -6.7811 18 7 -0.4340 -10.2240 -6.1315 19 14 -0.9858 -9.0024 -8.5561 20 1 0.1636 -9.2560 -9.4615 21 1 -2.0313 -10.0324 -8.7829 22 1 -1.5481 -7.6566 -8.8350 23 7 0.0796 -5.2405 -4.7536 24 6 3.1841 -1.3375 -0.0081 25 1 4.1309 -0.7974 -0.0142 26 6 3.2978 -2.8695 0.1558 27 6 2.3219 -3.1992 1.3067 28 8 1.3677 -2.1153 1.3032 29 6 2.1433 -0.9229 1.0634 30 1 2.5349 -0.4422 1.9598 31 1 -0.3633 0.6405 0.8036 32 1 -0.3632 0.3758 -0.9566 33 1 -0.3633 -1.0163 0.1527 34 1 3.2004 1.3518 0.1528 35 1 1.9171 1.8910 -0.9565 36 1 1.6731 1.9936 0.8038 37 1 0.5436 -2.3088 -0.8786 38 1 -0.0958 -3.9178 -2.4444 39 1 2.5332 -3.1616 -5.1270 40 1 2.2346 -4.7769 -7.1734 41 1 -0.9402 -6.3721 -7.2160 42 1 0.7151 -6.7215 -7.7691 43 1 -0.7513 -11.0266 -6.5742 44 1 2.9924 -3.3750 -0.7603 45 1 4.3157 -3.1498 0.4264 46 1 1.8192 -4.1478 1.1178 47 1 2.8543 -3.2353 2.2570 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173338429.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:25 Heat of formation + Delta-G solvation = 26.534268 kcal Electronic energy + Delta-G solvation = -29261.084801 eV Core-core repulsion = 25253.500341 eV Total energy + Delta-G solvation = -4007.584460 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.75303 -42.09878 -40.46063 -37.20934 -36.17626 -35.24048 -34.55626 -33.09951 -32.66364 -30.95997 -29.85605 -28.98543 -28.13998 -26.06349 -24.52176 -24.04524 -23.08382 -22.00460 -21.45898 -21.27305 -19.87725 -19.08395 -19.06152 -18.12332 -17.53335 -17.13023 -17.04845 -16.54562 -16.34179 -16.06377 -15.90424 -15.66822 -15.32277 -14.80358 -14.63108 -14.40007 -14.33941 -14.10674 -13.84966 -13.80213 -13.70218 -13.19487 -13.01564 -12.97238 -12.78543 -12.53003 -12.33464 -12.11682 -11.94366 -11.89663 -11.83042 -11.62529 -11.47947 -11.44543 -11.13705 -11.03466 -10.86634 -10.50104 -10.09806 -9.73403 -9.03759 -8.37294 -6.47438 1.04208 1.11754 1.36770 1.40209 1.49815 1.68930 2.08627 2.29324 2.38766 2.67954 2.95206 3.10347 3.20202 3.57034 3.65820 3.93103 3.94416 4.11498 4.19880 4.21432 4.23605 4.40086 4.40223 4.56043 4.60933 4.67594 4.77635 4.80480 4.82895 4.85229 4.88628 4.93961 4.97075 5.02756 5.11468 5.13547 5.13902 5.19563 5.25000 5.39945 5.44149 5.56598 5.81501 5.91756 5.94307 6.02438 6.42266 6.57800 6.72488 7.11303 7.15772 7.42174 8.79887 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023352 B = 0.002392 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.749626 B =11702.444889 C =12164.165819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.074 4.074 3 C -0.124 4.124 4 C 0.149 3.851 5 H 0.093 0.907 6 N -0.698 5.698 7 C 0.715 3.285 8 O -0.598 6.598 9 N -0.640 5.640 10 C 0.285 3.715 11 C -0.292 4.292 12 C 0.061 3.939 13 N -0.345 5.345 14 C 0.240 3.760 15 C -0.546 4.546 16 H 0.025 0.975 17 C 0.014 3.986 18 N -0.943 5.943 19 Si 0.956 3.044 20 H -0.253 1.253 21 H -0.281 1.281 22 H -0.239 1.239 23 N -0.350 5.350 24 C -0.152 4.152 25 H 0.135 0.865 26 C -0.146 4.146 27 C 0.050 3.950 28 O -0.373 6.373 29 C 0.059 3.941 30 H 0.112 0.888 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.410 0.590 38 H 0.417 0.583 39 H 0.168 0.832 40 H 0.211 0.789 41 H 0.045 0.955 42 H 0.082 0.918 43 H 0.272 0.728 44 H 0.050 0.950 45 H 0.083 0.917 46 H 0.087 0.913 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.491 24.618 13.811 28.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.075 4.075 3 C -0.181 4.181 4 C 0.042 3.958 5 H 0.111 0.889 6 N -0.354 5.354 7 C 0.415 3.585 8 O -0.476 6.476 9 N -0.291 5.291 10 C 0.029 3.971 11 C -0.323 4.323 12 C -0.087 4.087 13 N -0.127 5.127 14 C 0.120 3.880 15 C -0.584 4.584 16 H 0.044 0.956 17 C -0.185 4.185 18 N -0.582 5.582 19 Si 0.777 3.223 20 H -0.177 1.177 21 H -0.206 1.206 22 H -0.162 1.162 23 N -0.181 5.181 24 C -0.172 4.172 25 H 0.153 0.847 26 C -0.185 4.185 27 C -0.027 4.027 28 O -0.292 6.292 29 C 0.002 3.998 30 H 0.129 0.871 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.249 0.751 38 H 0.253 0.747 39 H 0.185 0.815 40 H 0.228 0.772 41 H 0.063 0.937 42 H 0.100 0.900 43 H 0.081 0.919 44 H 0.069 0.931 45 H 0.102 0.898 46 H 0.105 0.895 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.987 23.883 13.333 28.000 hybrid contribution -0.150 -0.804 -0.040 0.819 sum 5.837 23.079 13.293 27.265 Atomic orbital electron populations 1.21579 0.93364 1.02164 1.02046 1.22229 0.96778 0.95403 0.93069 1.21551 1.01490 0.91730 1.03330 1.21889 0.90418 0.86817 0.96628 0.88912 1.44676 1.36601 1.37324 1.16805 1.15726 0.81213 0.78994 0.82595 1.90822 1.35424 1.67169 1.54143 1.41433 1.35669 1.35470 1.16544 1.19117 0.96239 0.93712 0.88009 1.21715 1.06748 1.09050 0.94815 1.23244 0.91893 0.91721 1.01865 1.48482 1.24244 1.27587 1.12397 1.19879 0.96459 0.83223 0.88449 1.21235 1.45150 0.92666 0.99383 0.95616 1.25932 0.94470 0.94062 1.04045 1.70054 1.47535 1.00638 1.39949 0.85609 0.79251 0.79803 0.77667 1.17680 1.20648 1.16244 1.77306 1.25282 1.17932 0.97605 1.24611 0.99429 0.96036 0.97091 0.84689 1.22791 1.00848 0.95909 0.98906 1.23505 0.90331 0.90841 0.97991 1.88948 1.31107 1.15997 1.93164 1.24340 0.91255 0.87658 0.96561 0.87051 0.91124 0.92741 0.92627 0.90820 0.91534 0.90287 0.75126 0.74672 0.81488 0.77242 0.93715 0.90009 0.91894 0.93074 0.89844 0.89518 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.81 8.48 71.98 0.61 -1.20 16 2 C -0.07 -0.92 1.31 -51.77 -0.07 -0.98 16 3 C -0.12 -1.00 9.08 71.98 0.65 -0.34 16 4 C 0.15 2.65 3.63 45.46 0.17 2.82 16 5 H 0.09 1.94 7.48 -2.38 -0.02 1.93 16 6 N -0.70 -15.01 3.23 -455.57 -1.47 -16.49 16 7 C 0.71 21.40 7.65 179.06 1.37 22.77 16 8 O -0.60 -21.39 13.10 -4.03 -0.05 -21.44 16 9 N -0.64 -20.81 5.45 -321.23 -1.75 -22.57 16 10 C 0.29 11.75 8.11 133.31 1.08 12.83 16 11 C -0.29 -11.46 9.61 22.11 0.21 -11.25 16 12 C 0.06 2.29 11.44 83.52 0.96 3.25 16 13 N -0.35 -15.78 3.67 -351.85 -1.29 -17.07 16 14 C 0.24 11.25 5.33 85.63 0.46 11.70 16 15 C -0.55 -31.90 9.79 25.60 0.25 -31.64 16 16 H 0.03 1.75 8.06 -2.91 -0.02 1.73 16 17 C 0.01 0.77 5.47 84.65 0.46 1.24 16 18 N -0.94 -58.56 13.96 21.45 0.30 -58.26 16 19 Si 0.96 41.02 27.47 68.60 1.88 42.90 16 20 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 21 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 22 H -0.24 -9.27 6.54 99.48 0.65 -8.62 16 23 N -0.35 -16.69 12.42 -54.44 -0.68 -17.37 16 24 C -0.15 -2.20 4.66 -9.34 -0.04 -2.24 16 25 H 0.14 1.46 8.04 -2.39 -0.02 1.44 16 26 C -0.15 -2.57 6.26 31.60 0.20 -2.37 16 27 C 0.05 0.78 7.61 72.48 0.55 1.33 16 28 O -0.37 -6.23 8.58 -148.98 -1.28 -7.51 16 29 C 0.06 0.75 4.73 31.48 0.15 0.90 16 30 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.05 0.86 5.66 -2.39 -0.01 0.85 16 34 H 0.07 0.45 7.65 -2.39 -0.02 0.43 16 35 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.08 0.46 8.14 -2.38 -0.02 0.44 16 37 H 0.41 7.88 5.83 -92.70 -0.54 7.34 16 38 H 0.42 11.55 8.84 -92.70 -0.82 10.73 16 39 H 0.17 6.40 5.91 -2.91 -0.02 6.38 16 40 H 0.21 5.80 8.06 -2.91 -0.02 5.78 16 41 H 0.05 2.06 7.20 -2.39 -0.02 2.04 16 42 H 0.08 3.29 7.50 -2.39 -0.02 3.27 16 43 H 0.27 15.55 8.31 -92.71 -0.77 14.77 16 44 H 0.05 1.23 6.33 -2.39 -0.02 1.21 16 45 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -77.47 371.78 2.26 -75.20 By element: Atomic # 1 Polarization: 36.19 SS G_CDS: -0.40 Total: 35.79 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: 7.00 Total: 6.80 kcal Atomic # 7 Polarization: -126.86 SS G_CDS: -4.89 Total: -131.75 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -1.33 Total: -28.95 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 1.88 Total: 42.90 kcal Total: -77.47 2.26 -75.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173338429.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.738 kcal (2) G-P(sol) polarization free energy of solvation -77.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds