Wall clock time and date at job start Tue Mar 31 2020 19:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 112.83988 * 2 1 4 4 C 1.53652 * 113.53818 * 131.00018 * 2 1 3 5 5 H 1.08995 * 113.53599 * 204.86342 * 4 2 1 6 6 N 1.46500 * 113.53229 * 335.44390 * 4 2 1 7 7 C 1.34781 * 119.99666 * 203.71317 * 6 4 2 8 8 O 1.21591 * 120.00051 * 359.97438 * 7 6 4 9 9 N 1.34778 * 119.99729 * 180.02562 * 7 6 4 10 10 C 1.40192 * 119.99640 * 180.02562 * 9 7 6 11 11 C 1.40405 * 125.97615 * 359.97438 * 10 9 7 12 12 C 1.35239 * 107.87130 * 179.73783 * 11 10 9 13 13 N 1.34966 * 107.85641 * 0.02562 * 12 11 10 14 14 C 1.46501 * 125.97770 * 180.02562 * 13 12 11 15 15 C 1.50694 * 109.47324 * 124.99859 * 14 13 12 16 16 H 1.07997 * 120.00312 * 359.97438 * 15 14 13 17 17 C 1.37888 * 120.00164 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99614 * 359.97438 * 17 15 14 19 19 Si 1.86789 * 120.00194 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47045 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47292 * 119.99566 * 19 17 15 22 22 H 1.48503 * 109.47275 * 239.99727 * 19 17 15 23 23 N 1.31210 * 125.97051 * 179.69106 * 10 9 7 24 24 C 1.53747 * 87.64831 * 90.15235 * 4 2 1 25 25 H 1.09008 * 116.36876 * 264.84787 * 24 4 2 26 26 C 1.54489 * 112.86283 * 128.18513 * 24 4 2 27 27 C 1.54450 * 104.13655 * 267.07291 * 26 24 4 28 28 O 1.44403 * 104.80461 * 24.12447 * 27 26 24 29 29 C 1.44245 * 105.40033 * 319.42674 * 28 27 26 30 30 H 1.08999 * 114.90092 * 271.31005 * 29 28 27 31 31 H 1.08998 * 109.46988 * 289.00119 * 1 2 3 32 32 H 1.08998 * 109.46942 * 48.99506 * 1 2 3 33 33 H 1.09001 * 109.46842 * 168.99774 * 1 2 3 34 34 H 1.09003 * 109.46849 * 191.00573 * 3 2 1 35 35 H 1.09002 * 109.46709 * 311.00294 * 3 2 1 36 36 H 1.08990 * 109.47380 * 71.00051 * 3 2 1 37 37 H 0.96999 * 120.00087 * 23.72067 * 6 4 2 38 38 H 0.96999 * 120.00027 * 359.97438 * 9 7 6 39 39 H 1.08001 * 126.06098 * 359.71848 * 11 10 9 40 40 H 1.07997 * 126.07551 * 179.97438 * 12 11 10 41 41 H 1.09004 * 109.47409 * 245.00064 * 14 13 12 42 42 H 1.09007 * 109.46745 * 4.99532 * 14 13 12 43 43 H 0.97000 * 120.00223 * 180.02562 * 18 17 15 44 44 H 1.09006 * 110.49733 * 25.73248 * 26 24 4 45 45 H 1.09002 * 110.50344 * 148.26613 * 26 24 4 46 46 H 1.08996 * 110.37633 * 142.95899 * 27 26 24 47 47 H 1.09007 * 110.37069 * 265.18454 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1239 1.4101 0.0000 4 6 2.1436 -0.9242 1.0631 5 1 3.1487 -0.6313 1.3667 6 7 1.2572 -1.1748 2.2023 7 6 1.7755 -1.5382 3.3922 8 8 2.9786 -1.6585 3.5201 9 7 0.9599 -1.7693 4.4401 10 6 1.4991 -2.1468 5.6779 11 6 2.8623 -2.3210 5.9651 12 6 2.9701 -2.6792 7.2648 13 7 1.7256 -2.7315 7.7843 14 6 1.3834 -3.0794 9.1656 15 6 0.5546 -1.9761 9.7710 16 1 0.3077 -1.1028 9.1856 17 6 0.1123 -2.0809 11.0728 18 7 0.4134 -3.1442 11.7859 19 14 -0.9145 -0.7130 11.8234 20 1 -1.1119 0.3648 10.8210 21 1 -2.2346 -1.2540 12.2355 22 1 -0.2129 -0.1619 13.0106 23 7 0.8182 -2.3940 6.7719 24 6 2.1222 -2.0445 0.0104 25 1 1.2587 -2.7096 0.0287 26 6 3.4909 -2.7426 -0.1512 27 6 4.1738 -1.9719 -1.3023 28 8 3.5437 -0.6726 -1.3013 29 6 2.1439 -0.9259 -1.0625 30 1 1.5499 -1.1021 -1.9593 31 1 -0.3633 0.3346 0.9717 32 1 -0.3633 0.6743 -0.7755 33 1 -0.3633 -1.0088 -0.1961 34 1 3.1946 1.3533 -0.1962 35 1 1.6435 2.0066 -0.7756 36 1 1.9566 1.8748 0.9716 37 1 0.2974 -1.0793 2.1001 38 1 0.0001 -1.6737 4.3379 39 1 3.6798 -2.1922 5.2712 40 1 3.8889 -2.8873 7.7930 41 1 0.8142 -4.0089 9.1759 42 1 2.2978 -3.2069 9.7453 43 1 0.1019 -3.2182 12.7015 44 1 4.0744 -2.6555 0.7654 45 1 3.3557 -3.7907 -0.4181 46 1 5.2428 -1.8753 -1.1126 47 1 4.0020 -2.4781 -2.2523 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173338438.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:30 Heat of formation + Delta-G solvation = 37.430176 kcal Electronic energy + Delta-G solvation = -28753.427168 eV Core-core repulsion = 24746.315191 eV Total energy + Delta-G solvation = -4007.111978 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.78103 -40.57979 -39.30089 -36.69417 -34.66151 -33.65126 -33.16244 -32.23729 -30.76797 -29.29312 -29.18334 -27.83448 -26.70818 -25.08365 -23.44509 -23.00723 -21.65482 -21.05495 -20.37562 -19.93306 -18.90565 -17.87981 -17.30899 -16.57176 -16.42540 -16.28424 -15.62686 -15.42813 -15.19198 -14.81377 -14.57463 -14.23183 -14.07881 -13.86622 -13.73362 -13.55459 -12.83673 -12.78291 -12.56011 -12.46935 -12.33107 -12.21192 -12.13498 -11.79099 -11.66991 -11.37508 -11.27091 -11.04379 -10.93754 -10.87286 -10.47279 -10.39413 -10.25416 -10.05850 -9.90537 -9.65931 -9.46632 -9.12853 -8.62882 -8.08184 -7.39483 -6.23565 -4.28318 2.40254 2.67725 3.11587 3.22582 3.27818 3.30074 3.36576 3.62737 3.82050 3.84174 4.15133 4.26650 4.31521 4.38374 4.55822 4.66274 4.76433 4.85575 4.94170 4.99410 5.11601 5.15828 5.24256 5.30284 5.41086 5.48843 5.51338 5.57021 5.62956 5.65698 5.73159 5.83198 5.85273 5.93452 6.09808 6.23764 6.34772 6.51675 6.56415 6.62942 6.89038 7.02868 7.12690 7.51801 7.70983 7.84055 7.99549 8.08579 8.61232 8.68371 8.82509 9.37210 10.85178 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023494 B = 0.002208 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.504267 B =12680.422735 C =13411.640843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.085 4.085 3 C -0.135 4.135 4 C 0.169 3.831 5 H 0.122 0.878 6 N -0.734 5.734 7 C 0.713 3.287 8 O -0.566 6.566 9 N -0.644 5.644 10 C 0.275 3.725 11 C -0.286 4.286 12 C 0.051 3.949 13 N -0.321 5.321 14 C 0.258 3.742 15 C -0.526 4.526 16 H 0.069 0.931 17 C 0.061 3.939 18 N -0.895 5.895 19 Si 0.907 3.093 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.282 1.282 23 N -0.308 5.308 24 C -0.154 4.154 25 H 0.111 0.889 26 C -0.149 4.149 27 C 0.047 3.953 28 O -0.356 6.356 29 C 0.060 3.940 30 H 0.095 0.905 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.396 0.604 38 H 0.406 0.594 39 H 0.161 0.839 40 H 0.167 0.833 41 H 0.044 0.956 42 H 0.057 0.943 43 H 0.266 0.734 44 H 0.086 0.914 45 H 0.075 0.925 46 H 0.093 0.907 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.527 3.173 -27.613 27.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.086 4.086 3 C -0.192 4.192 4 C 0.063 3.937 5 H 0.140 0.860 6 N -0.389 5.389 7 C 0.413 3.587 8 O -0.441 6.441 9 N -0.294 5.294 10 C 0.021 3.979 11 C -0.317 4.317 12 C -0.099 4.099 13 N -0.103 5.103 14 C 0.141 3.859 15 C -0.565 4.565 16 H 0.087 0.913 17 C -0.142 4.142 18 N -0.534 5.534 19 Si 0.735 3.265 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.208 1.208 23 N -0.139 5.139 24 C -0.174 4.174 25 H 0.129 0.871 26 C -0.187 4.187 27 C -0.029 4.029 28 O -0.275 6.275 29 C 0.001 3.999 30 H 0.113 0.887 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.232 0.768 38 H 0.240 0.760 39 H 0.178 0.822 40 H 0.184 0.816 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.104 0.896 45 H 0.094 0.906 46 H 0.111 0.889 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.547 3.094 -26.671 26.970 hybrid contribution -0.840 0.447 0.167 0.966 sum 1.707 3.542 -26.503 26.793 Atomic orbital electron populations 1.21584 0.92300 1.02506 1.02841 1.22255 0.95954 0.95888 0.94520 1.21642 1.01873 0.93913 1.01755 1.22472 0.95340 0.93608 0.82328 0.86013 1.45088 1.10156 1.74534 1.09171 1.15681 0.85196 0.78096 0.79773 1.90857 1.12750 1.57657 1.82861 1.41401 1.09733 1.71093 1.07142 1.18786 0.92036 1.01639 0.85396 1.21505 0.95859 1.17895 0.96450 1.22551 0.90549 1.02276 0.94568 1.49050 1.02372 1.48771 1.10098 1.19733 0.98163 0.97573 0.70445 1.21301 1.33110 1.04581 0.97497 0.91266 1.24953 0.96162 0.96367 0.96685 1.69927 1.45675 1.27834 1.09961 0.86277 0.79725 0.81578 0.78949 1.19575 1.20715 1.20771 1.77320 1.16106 1.25677 0.94800 1.24611 0.98995 0.96565 0.97245 0.87053 1.22913 0.95739 0.99895 1.00143 1.23502 0.98361 0.83505 0.97535 1.89022 1.18260 1.26994 1.93242 1.24012 0.84416 0.95763 0.95702 0.88699 0.91403 0.91376 0.91917 0.91113 0.92448 0.92354 0.76799 0.75981 0.82207 0.81563 0.93779 0.92558 0.92402 0.89572 0.90647 0.88861 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.72 8.04 37.16 0.30 -0.42 16 2 C -0.09 -0.63 1.31 -153.79 -0.20 -0.83 16 3 C -0.13 -1.08 9.09 37.16 0.34 -0.74 16 4 C 0.17 1.61 2.95 -67.20 -0.20 1.41 16 5 H 0.12 1.50 7.22 -51.93 -0.38 1.12 16 6 N -0.73 -7.38 5.23 -57.96 -0.30 -7.68 16 7 C 0.71 10.45 8.53 -86.91 -0.74 9.71 16 8 O -0.57 -10.16 13.09 5.29 0.07 -10.09 16 9 N -0.64 -10.02 5.46 -15.50 -0.08 -10.10 16 10 C 0.28 5.59 8.11 -154.36 -1.25 4.34 16 11 C -0.29 -5.77 9.61 -39.83 -0.38 -6.15 16 12 C 0.05 1.02 11.44 -17.24 -0.20 0.83 16 13 N -0.32 -7.54 3.67 -62.56 -0.23 -7.76 16 14 C 0.26 6.61 6.26 -5.20 -0.03 6.57 16 15 C -0.53 -14.71 9.24 -34.44 -0.32 -15.03 16 16 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 18 N -0.90 -25.41 13.29 55.43 0.74 -24.67 16 19 Si 0.91 21.42 29.54 -169.99 -5.02 16.39 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 N -0.31 -7.13 12.42 31.44 0.39 -6.74 16 24 C -0.15 -1.23 4.46 -88.39 -0.39 -1.62 16 25 H 0.11 0.79 8.07 -51.92 -0.42 0.37 16 26 C -0.15 -1.22 6.64 -25.19 -0.17 -1.38 16 27 C 0.05 0.35 7.63 37.92 0.29 0.64 16 28 O -0.36 -3.31 9.92 -35.23 -0.35 -3.66 16 29 C 0.06 0.45 4.73 -25.29 -0.12 0.33 16 30 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.35 7.09 -51.93 -0.37 -0.02 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.28 7.68 -51.93 -0.40 -0.12 16 34 H 0.07 0.65 7.03 -51.93 -0.36 0.29 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.40 2.90 6.62 -40.82 -0.27 2.63 16 38 H 0.41 5.08 8.84 -40.82 -0.36 4.72 16 39 H 0.16 3.17 5.91 -52.49 -0.31 2.86 16 40 H 0.17 2.76 8.06 -52.49 -0.42 2.34 16 41 H 0.04 1.19 8.14 -51.93 -0.42 0.76 16 42 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 43 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 44 H 0.09 0.88 7.90 -51.93 -0.41 0.47 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 LS Contribution 381.14 15.07 5.74 5.74 Total: -1.00 -33.21 381.14 -9.27 -42.48 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -7.05 Total: 6.86 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -3.18 Total: -0.77 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: 0.51 Total: -56.96 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.28 Total: -13.75 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.21 -9.27 -42.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173338438.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.911 kcal (2) G-P(sol) polarization free energy of solvation -33.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds