Wall clock time and date at job start Tue Mar 31 2020 19:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 112.83988 * 2 1 4 4 C 1.53652 * 113.53818 * 131.00018 * 2 1 3 5 5 H 1.08995 * 113.53599 * 204.86342 * 4 2 1 6 6 N 1.46500 * 113.53229 * 335.44390 * 4 2 1 7 7 C 1.34781 * 119.99666 * 203.71317 * 6 4 2 8 8 O 1.21591 * 120.00051 * 359.97438 * 7 6 4 9 9 N 1.34778 * 119.99729 * 180.02562 * 7 6 4 10 10 C 1.40192 * 119.99640 * 180.02562 * 9 7 6 11 11 C 1.40405 * 125.97615 * 359.97438 * 10 9 7 12 12 C 1.35239 * 107.87130 * 179.73783 * 11 10 9 13 13 N 1.34966 * 107.85641 * 0.02562 * 12 11 10 14 14 C 1.46501 * 125.97770 * 180.02562 * 13 12 11 15 15 C 1.50694 * 109.47324 * 124.99859 * 14 13 12 16 16 H 1.07997 * 120.00312 * 359.97438 * 15 14 13 17 17 C 1.37888 * 120.00164 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99614 * 359.97438 * 17 15 14 19 19 Si 1.86789 * 120.00194 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47045 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47292 * 119.99566 * 19 17 15 22 22 H 1.48503 * 109.47275 * 239.99727 * 19 17 15 23 23 N 1.31210 * 125.97051 * 179.69106 * 10 9 7 24 24 C 1.53747 * 87.64831 * 90.15235 * 4 2 1 25 25 H 1.09008 * 116.36876 * 264.84787 * 24 4 2 26 26 C 1.54489 * 112.86283 * 128.18513 * 24 4 2 27 27 C 1.54450 * 104.13655 * 267.07291 * 26 24 4 28 28 O 1.44403 * 104.80461 * 24.12447 * 27 26 24 29 29 C 1.44245 * 105.40033 * 319.42674 * 28 27 26 30 30 H 1.08999 * 114.90092 * 271.31005 * 29 28 27 31 31 H 1.08998 * 109.46988 * 289.00119 * 1 2 3 32 32 H 1.08998 * 109.46942 * 48.99506 * 1 2 3 33 33 H 1.09001 * 109.46842 * 168.99774 * 1 2 3 34 34 H 1.09003 * 109.46849 * 191.00573 * 3 2 1 35 35 H 1.09002 * 109.46709 * 311.00294 * 3 2 1 36 36 H 1.08990 * 109.47380 * 71.00051 * 3 2 1 37 37 H 0.96999 * 120.00087 * 23.72067 * 6 4 2 38 38 H 0.96999 * 120.00027 * 359.97438 * 9 7 6 39 39 H 1.08001 * 126.06098 * 359.71848 * 11 10 9 40 40 H 1.07997 * 126.07551 * 179.97438 * 12 11 10 41 41 H 1.09004 * 109.47409 * 245.00064 * 14 13 12 42 42 H 1.09007 * 109.46745 * 4.99532 * 14 13 12 43 43 H 0.97000 * 120.00223 * 180.02562 * 18 17 15 44 44 H 1.09006 * 110.49733 * 25.73248 * 26 24 4 45 45 H 1.09002 * 110.50344 * 148.26613 * 26 24 4 46 46 H 1.08996 * 110.37633 * 142.95899 * 27 26 24 47 47 H 1.09007 * 110.37069 * 265.18454 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1239 1.4101 0.0000 4 6 2.1436 -0.9242 1.0631 5 1 3.1487 -0.6313 1.3667 6 7 1.2572 -1.1748 2.2023 7 6 1.7755 -1.5382 3.3922 8 8 2.9786 -1.6585 3.5201 9 7 0.9599 -1.7693 4.4401 10 6 1.4991 -2.1468 5.6779 11 6 2.8623 -2.3210 5.9651 12 6 2.9701 -2.6792 7.2648 13 7 1.7256 -2.7315 7.7843 14 6 1.3834 -3.0794 9.1656 15 6 0.5546 -1.9761 9.7710 16 1 0.3077 -1.1028 9.1856 17 6 0.1123 -2.0809 11.0728 18 7 0.4134 -3.1442 11.7859 19 14 -0.9145 -0.7130 11.8234 20 1 -1.1119 0.3648 10.8210 21 1 -2.2346 -1.2540 12.2355 22 1 -0.2129 -0.1619 13.0106 23 7 0.8182 -2.3940 6.7719 24 6 2.1222 -2.0445 0.0104 25 1 1.2587 -2.7096 0.0287 26 6 3.4909 -2.7426 -0.1512 27 6 4.1738 -1.9719 -1.3023 28 8 3.5437 -0.6726 -1.3013 29 6 2.1439 -0.9259 -1.0625 30 1 1.5499 -1.1021 -1.9593 31 1 -0.3633 0.3346 0.9717 32 1 -0.3633 0.6743 -0.7755 33 1 -0.3633 -1.0088 -0.1961 34 1 3.1946 1.3533 -0.1962 35 1 1.6435 2.0066 -0.7756 36 1 1.9566 1.8748 0.9716 37 1 0.2974 -1.0793 2.1001 38 1 0.0001 -1.6737 4.3379 39 1 3.6798 -2.1922 5.2712 40 1 3.8889 -2.8873 7.7930 41 1 0.8142 -4.0089 9.1759 42 1 2.2978 -3.2069 9.7453 43 1 0.1019 -3.2182 12.7015 44 1 4.0744 -2.6555 0.7654 45 1 3.3557 -3.7907 -0.4181 46 1 5.2428 -1.8753 -1.1126 47 1 4.0020 -2.4781 -2.2523 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173338438.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:29 Heat of formation + Delta-G solvation = 15.673842 kcal Electronic energy + Delta-G solvation = -28754.370594 eV Core-core repulsion = 24746.315191 eV Total energy + Delta-G solvation = -4008.055403 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.54573 -42.07219 -40.56568 -37.43478 -36.17330 -35.29589 -34.41062 -33.00287 -32.47323 -30.92663 -29.81722 -28.57689 -28.36288 -26.09011 -24.81481 -24.02795 -22.95782 -21.93856 -21.70903 -21.30653 -19.81685 -18.98495 -18.68030 -18.25882 -17.76921 -16.99593 -16.87984 -16.55470 -16.23915 -16.18738 -15.83897 -15.58471 -15.25050 -14.88761 -14.50866 -14.38790 -14.32062 -14.20683 -13.80155 -13.67253 -13.41985 -13.10848 -12.99918 -12.94539 -12.79012 -12.72345 -12.32412 -12.30827 -12.12186 -11.98535 -11.88295 -11.63277 -11.58172 -11.38461 -11.13191 -11.07896 -10.72109 -10.51905 -10.06283 -9.71639 -9.05033 -8.32683 -6.46695 1.07184 1.14225 1.37403 1.38695 1.51948 1.69902 2.11974 2.36281 2.39886 2.69386 2.98789 3.13842 3.18957 3.52448 3.61907 3.95002 3.97319 4.08774 4.18774 4.25602 4.28193 4.35922 4.39271 4.51790 4.69495 4.77778 4.78887 4.85241 4.86832 4.92239 4.95574 4.96836 4.99946 5.03357 5.08344 5.11089 5.14805 5.21146 5.38691 5.43848 5.55502 5.57594 5.76934 5.88461 5.94520 5.98070 6.29618 6.64253 6.76769 7.15274 7.23218 7.43796 8.75018 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023494 B = 0.002208 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.504267 B =12680.422735 C =13411.640843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.076 4.076 3 C -0.134 4.134 4 C 0.156 3.844 5 H 0.089 0.911 6 N -0.709 5.709 7 C 0.711 3.289 8 O -0.600 6.600 9 N -0.636 5.636 10 C 0.285 3.715 11 C -0.293 4.293 12 C 0.056 3.944 13 N -0.345 5.345 14 C 0.273 3.727 15 C -0.545 4.545 16 H 0.052 0.948 17 C 0.017 3.983 18 N -0.921 5.921 19 Si 0.972 3.028 20 H -0.275 1.275 21 H -0.272 1.272 22 H -0.270 1.270 23 N -0.346 5.346 24 C -0.149 4.149 25 H 0.128 0.872 26 C -0.150 4.150 27 C 0.047 3.953 28 O -0.379 6.379 29 C 0.064 3.936 30 H 0.119 0.881 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.052 0.948 35 H 0.071 0.929 36 H 0.049 0.951 37 H 0.413 0.587 38 H 0.420 0.580 39 H 0.165 0.835 40 H 0.200 0.800 41 H 0.022 0.978 42 H 0.058 0.942 43 H 0.272 0.728 44 H 0.058 0.942 45 H 0.089 0.911 46 H 0.093 0.907 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.293 3.764 -29.360 29.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.077 4.077 3 C -0.191 4.191 4 C 0.051 3.949 5 H 0.107 0.893 6 N -0.366 5.366 7 C 0.411 3.589 8 O -0.478 6.478 9 N -0.288 5.288 10 C 0.029 3.971 11 C -0.324 4.324 12 C -0.093 4.093 13 N -0.128 5.128 14 C 0.154 3.846 15 C -0.584 4.584 16 H 0.070 0.930 17 C -0.183 4.183 18 N -0.560 5.560 19 Si 0.797 3.203 20 H -0.199 1.199 21 H -0.198 1.198 22 H -0.196 1.196 23 N -0.177 5.177 24 C -0.169 4.169 25 H 0.146 0.854 26 C -0.188 4.188 27 C -0.029 4.029 28 O -0.298 6.298 29 C 0.006 3.994 30 H 0.136 0.864 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.252 0.748 38 H 0.258 0.742 39 H 0.182 0.818 40 H 0.217 0.783 41 H 0.040 0.960 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.107 0.893 46 H 0.111 0.889 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.284 3.694 -28.477 28.744 hybrid contribution -0.373 0.275 0.576 0.740 sum 0.911 3.969 -27.901 28.196 Atomic orbital electron populations 1.21633 0.90139 1.03907 1.03509 1.22291 0.97455 0.94874 0.93111 1.21623 1.01027 0.94721 1.01775 1.22563 0.94068 0.95856 0.82447 0.89290 1.44936 1.11196 1.72810 1.07647 1.15862 0.84653 0.77920 0.80488 1.90832 1.14352 1.59121 1.83511 1.41387 1.10689 1.70839 1.05855 1.19081 0.92176 0.99674 0.86163 1.21666 0.96089 1.18096 0.96541 1.23139 0.90660 1.00688 0.94764 1.48822 1.03466 1.50793 1.09671 1.19336 0.97501 0.95983 0.71796 1.21423 1.34201 1.04729 0.98013 0.93003 1.25749 0.97011 0.98627 0.96898 1.70000 1.46297 1.29224 1.10449 0.85290 0.78415 0.78542 0.78097 1.19925 1.19777 1.19558 1.77241 1.17076 1.27810 0.95616 1.24635 0.99391 0.96490 0.96406 0.85364 1.22898 0.95696 1.00956 0.99277 1.23589 0.98314 0.82918 0.98079 1.89007 1.19407 1.28063 1.93368 1.24136 0.83920 0.95037 0.96331 0.86351 0.91219 0.90091 0.90382 0.92870 0.90985 0.93143 0.74786 0.74238 0.81761 0.78307 0.96029 0.92409 0.91845 0.92364 0.89285 0.88868 0.90321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.00 8.04 71.98 0.58 -0.42 16 2 C -0.08 -0.99 1.31 -51.72 -0.07 -1.05 16 3 C -0.13 -2.04 9.09 71.98 0.65 -1.38 16 4 C 0.16 2.86 2.95 45.46 0.13 2.99 16 5 H 0.09 2.28 7.22 -2.39 -0.02 2.26 16 6 N -0.71 -13.37 5.23 -455.55 -2.38 -15.76 16 7 C 0.71 20.50 8.53 179.05 1.53 22.03 16 8 O -0.60 -21.79 13.09 -4.00 -0.05 -21.85 16 9 N -0.64 -19.41 5.46 -321.23 -1.75 -21.16 16 10 C 0.28 11.57 8.11 133.32 1.08 12.65 16 11 C -0.29 -11.82 9.61 22.11 0.21 -11.61 16 12 C 0.06 2.26 11.44 83.52 0.96 3.22 16 13 N -0.35 -16.48 3.67 -351.84 -1.29 -17.77 16 14 C 0.27 14.28 6.26 85.63 0.54 14.82 16 15 C -0.55 -31.00 9.24 25.60 0.24 -30.76 16 16 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 17 C 0.02 0.97 5.46 84.66 0.46 1.43 16 18 N -0.92 -52.36 13.29 21.45 0.28 -52.08 16 19 Si 0.97 43.77 29.54 68.60 2.03 45.80 16 20 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 21 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 22 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 23 N -0.35 -16.27 12.42 -54.43 -0.68 -16.95 16 24 C -0.15 -2.11 4.46 -9.35 -0.04 -2.15 16 25 H 0.13 1.41 8.07 -2.38 -0.02 1.39 16 26 C -0.15 -2.35 6.64 31.59 0.21 -2.14 16 27 C 0.05 0.65 7.63 72.47 0.55 1.21 16 28 O -0.38 -6.67 9.92 -148.98 -1.48 -8.15 16 29 C 0.06 0.82 4.73 31.53 0.15 0.97 16 30 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.07 0.51 7.09 -2.39 -0.02 0.49 16 32 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.08 0.37 7.68 -2.39 -0.02 0.35 16 34 H 0.05 0.99 7.03 -2.39 -0.02 0.97 16 35 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.41 5.09 6.62 -92.71 -0.61 4.48 16 38 H 0.42 10.06 8.84 -92.71 -0.82 9.24 16 39 H 0.17 6.54 5.91 -2.91 -0.02 6.52 16 40 H 0.20 6.40 8.06 -2.91 -0.02 6.38 16 41 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.06 2.96 8.07 -2.38 -0.02 2.94 16 43 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 44 H 0.06 1.24 7.90 -2.38 -0.02 1.22 16 45 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 Total: -1.00 -72.92 381.14 1.43 -71.49 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: -0.43 Total: 26.63 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: 7.18 Total: 9.80 kcal Atomic # 7 Polarization: -117.90 SS G_CDS: -5.82 Total: -123.72 kcal Atomic # 8 Polarization: -28.46 SS G_CDS: -1.53 Total: -29.99 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -72.92 1.43 -71.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173338438.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.160 kcal (2) G-P(sol) polarization free energy of solvation -72.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds