Wall clock time and date at job start Tue Mar 31 2020 19:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 112.83989 * 2 1 4 4 C 1.53656 * 113.53745 * 228.99708 * 2 1 3 5 5 H 1.09005 * 113.53402 * 155.20866 * 4 2 1 6 6 N 1.46502 * 113.59662 * 24.56841 * 4 2 1 7 7 C 1.34778 * 119.99865 * 157.45075 * 6 4 2 8 8 O 1.21587 * 119.99912 * 359.97438 * 7 6 4 9 9 N 1.34777 * 119.99925 * 179.97438 * 7 6 4 10 10 C 1.40191 * 119.99894 * 179.97438 * 9 7 6 11 11 C 1.40402 * 125.97360 * 0.02562 * 10 9 7 12 12 C 1.35247 * 107.87050 * 179.97438 * 11 10 9 13 13 N 1.34966 * 107.85343 * 359.97438 * 12 11 10 14 14 C 1.46501 * 125.97364 * 180.02562 * 13 12 11 15 15 C 1.50707 * 109.46915 * 124.99992 * 14 13 12 16 16 H 1.08000 * 120.00053 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99615 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00637 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99484 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47517 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46764 * 120.00110 * 19 17 15 22 22 H 1.48499 * 109.47217 * 239.99595 * 19 17 15 23 23 N 1.31211 * 125.97174 * 179.69261 * 10 9 7 24 24 C 1.53742 * 87.57385 * 269.88138 * 4 2 1 25 25 H 1.09009 * 116.81311 * 94.60262 * 24 4 2 26 26 C 1.54488 * 112.85909 * 231.77829 * 24 4 2 27 27 C 1.54447 * 104.13396 * 92.93518 * 26 24 4 28 28 O 1.44393 * 104.80740 * 335.86599 * 27 26 24 29 29 C 1.44256 * 105.39937 * 40.57975 * 28 27 26 30 30 H 1.08996 * 114.90145 * 88.68667 * 29 28 27 31 31 H 1.09005 * 109.47240 * 308.49839 * 1 2 3 32 32 H 1.09002 * 109.47150 * 68.49689 * 1 2 3 33 33 H 1.09006 * 109.47393 * 188.49568 * 1 2 3 34 34 H 1.09006 * 109.46877 * 171.49983 * 3 2 1 35 35 H 1.08999 * 109.47537 * 291.49693 * 3 2 1 36 36 H 1.08997 * 109.46993 * 51.50177 * 3 2 1 37 37 H 0.96999 * 120.00109 * 337.45862 * 6 4 2 38 38 H 0.96999 * 120.00049 * 0.02562 * 9 7 6 39 39 H 1.08003 * 126.06497 * 359.97438 * 11 10 9 40 40 H 1.07991 * 126.07360 * 179.97438 * 12 11 10 41 41 H 1.08993 * 109.47273 * 245.00160 * 14 13 12 42 42 H 1.09007 * 109.46997 * 5.00554 * 14 13 12 43 43 H 0.96998 * 119.99941 * 179.97438 * 18 17 15 44 44 H 1.08998 * 110.50187 * 334.26696 * 26 24 4 45 45 H 1.09009 * 110.61049 * 211.65080 * 26 24 4 46 46 H 1.08997 * 110.37334 * 217.03447 * 27 26 24 47 47 H 1.09001 * 110.37755 * 94.69809 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1238 1.4101 0.0000 4 6 2.1436 -0.9243 -1.0631 5 1 3.1492 -0.6321 -1.3658 6 7 1.2584 -1.1757 -2.2031 7 6 1.7761 -1.5621 -3.3859 8 8 2.9779 -1.7016 -3.5070 9 7 0.9617 -1.7939 -4.4345 10 6 1.5003 -2.1953 -5.6650 11 6 2.8620 -2.3942 -5.9438 12 6 2.9694 -2.7767 -7.2366 13 7 1.7261 -2.8202 -7.7599 14 6 1.3840 -3.1884 -9.1360 15 6 0.3805 -4.3127 -9.1205 16 1 0.0322 -4.7126 -8.1797 17 6 -0.0927 -4.8306 -10.3074 18 7 0.3311 -4.3433 -11.4530 19 14 -1.3370 -6.2238 -10.2881 20 1 -1.6507 -6.5880 -8.8831 21 1 -2.5792 -5.7874 -10.9751 22 1 -0.7708 -7.4030 -10.9911 23 7 0.8195 -2.4568 -6.7558 24 6 2.1205 -2.0435 -0.0093 25 1 1.2552 -2.7065 -0.0151 26 6 3.4883 -2.7430 0.1532 27 6 4.1718 -1.9721 1.3038 28 8 3.5434 -0.6721 1.3014 29 6 2.1432 -0.9239 1.0625 30 1 1.5488 -1.0985 1.9593 31 1 -0.3634 0.6397 0.8043 32 1 -0.3633 0.3767 -0.9562 33 1 -0.3634 -1.0164 0.1518 34 1 3.2016 1.3504 0.1519 35 1 1.9178 1.8912 -0.9561 36 1 1.6753 1.9932 0.8043 37 1 0.2997 -1.0639 -2.1066 38 1 0.0030 -1.6822 -4.3380 39 1 3.6787 -2.2647 -5.2490 40 1 3.8870 -3.0064 -7.7576 41 1 0.9557 -2.3262 -9.6470 42 1 2.2836 -3.5115 -9.6600 43 1 -0.0016 -4.7081 -12.2880 44 1 4.0721 -2.6576 -0.7633 45 1 3.3538 -3.7907 0.4226 46 1 5.2410 -1.8771 1.1143 47 1 3.9975 -2.4761 2.2545 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246709153.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:37 Heat of formation + Delta-G solvation = 37.187759 kcal Electronic energy + Delta-G solvation = -28762.950919 eV Core-core repulsion = 24755.828430 eV Total energy + Delta-G solvation = -4007.122490 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.78474 -40.57931 -39.29952 -36.69389 -34.66113 -33.65348 -33.16428 -32.22710 -30.76801 -29.29145 -29.18051 -27.84330 -26.70869 -25.08545 -23.43443 -23.00888 -21.65435 -21.04896 -20.37488 -19.93181 -18.90515 -17.87994 -17.30562 -16.56989 -16.42308 -16.27958 -15.62575 -15.36519 -15.25707 -14.82279 -14.54954 -14.22891 -14.01441 -13.91368 -13.79376 -13.53135 -12.83281 -12.78504 -12.56491 -12.47351 -12.32058 -12.21171 -12.13441 -11.80573 -11.65000 -11.39067 -11.26043 -11.04250 -10.94294 -10.87724 -10.46668 -10.38496 -10.25802 -10.06541 -9.90009 -9.65993 -9.46518 -9.12788 -8.63116 -8.08107 -7.39430 -6.23683 -4.28520 2.40327 2.67901 3.11683 3.22233 3.28053 3.29748 3.36156 3.62869 3.82117 3.84389 4.15790 4.26727 4.31344 4.38533 4.56189 4.66243 4.77043 4.86970 4.94680 4.99762 5.11475 5.15983 5.23697 5.30387 5.41546 5.49116 5.51111 5.56611 5.62854 5.65541 5.72983 5.83312 5.86960 5.93051 6.08328 6.23828 6.34837 6.52105 6.56459 6.63024 6.89040 7.02967 7.12833 7.51875 7.70790 7.83939 7.99600 8.08543 8.61379 8.68362 8.82360 9.37060 10.85052 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022281 B = 0.002176 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.402602 B =12861.722275 C =12977.238493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.085 4.085 3 C -0.134 4.134 4 C 0.170 3.830 5 H 0.122 0.878 6 N -0.734 5.734 7 C 0.713 3.287 8 O -0.566 6.566 9 N -0.644 5.644 10 C 0.275 3.725 11 C -0.286 4.286 12 C 0.050 3.950 13 N -0.321 5.321 14 C 0.258 3.742 15 C -0.526 4.526 16 H 0.069 0.931 17 C 0.061 3.939 18 N -0.895 5.895 19 Si 0.907 3.093 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.282 1.282 23 N -0.308 5.308 24 C -0.154 4.154 25 H 0.111 0.889 26 C -0.149 4.149 27 C 0.047 3.953 28 O -0.357 6.357 29 C 0.059 3.941 30 H 0.095 0.905 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.396 0.604 38 H 0.406 0.594 39 H 0.161 0.839 40 H 0.167 0.833 41 H 0.045 0.955 42 H 0.057 0.943 43 H 0.266 0.734 44 H 0.086 0.914 45 H 0.075 0.925 46 H 0.093 0.907 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.865 7.883 26.301 27.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.086 4.086 3 C -0.191 4.191 4 C 0.064 3.936 5 H 0.139 0.861 6 N -0.389 5.389 7 C 0.413 3.587 8 O -0.441 6.441 9 N -0.294 5.294 10 C 0.021 3.979 11 C -0.317 4.317 12 C -0.099 4.099 13 N -0.103 5.103 14 C 0.141 3.859 15 C -0.565 4.565 16 H 0.087 0.913 17 C -0.142 4.142 18 N -0.534 5.534 19 Si 0.735 3.265 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.208 1.208 23 N -0.139 5.139 24 C -0.174 4.174 25 H 0.129 0.871 26 C -0.187 4.187 27 C -0.029 4.029 28 O -0.276 6.276 29 C 0.000 4.000 30 H 0.113 0.887 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.232 0.768 38 H 0.240 0.760 39 H 0.178 0.822 40 H 0.184 0.816 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.105 0.895 45 H 0.094 0.906 46 H 0.111 0.889 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.890 7.859 25.345 26.692 hybrid contribution -0.952 -0.958 0.231 1.370 sum 1.938 6.901 25.576 26.561 Atomic orbital electron populations 1.21580 0.92288 1.02511 1.02862 1.22224 0.95962 0.95872 0.94530 1.21633 1.01865 0.93938 1.01680 1.22463 0.95312 0.93582 0.82289 0.86052 1.45079 1.10321 1.73880 1.09666 1.15676 0.85180 0.78145 0.79739 1.90856 1.12858 1.57642 1.82767 1.41401 1.09892 1.70490 1.07591 1.18787 0.92011 1.01292 0.85769 1.21507 0.95950 1.17581 0.96669 1.22553 0.90588 1.02072 0.94736 1.49050 1.02368 1.48150 1.10719 1.19736 0.98189 0.96969 0.71033 1.21302 1.24630 1.17083 0.93480 0.91267 1.24949 0.96776 0.97415 0.95011 1.69927 1.43833 1.42147 0.97483 0.86281 0.80683 0.81278 0.78305 1.19586 1.20715 1.20770 1.77321 1.15958 1.25120 0.95499 1.24609 0.99020 0.96554 0.97212 0.87060 1.22912 0.95737 0.99909 1.00134 1.23510 0.98374 0.83466 0.97553 1.89019 1.18271 1.27008 1.93255 1.23992 0.84421 0.95843 0.95728 0.88711 0.91379 0.91396 0.91900 0.91159 0.92401 0.92431 0.76809 0.75983 0.82207 0.81564 0.93764 0.92555 0.92399 0.89546 0.90638 0.88851 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.71 7.96 37.15 0.30 -0.41 16 2 C -0.08 -0.62 1.31 -153.87 -0.20 -0.82 16 3 C -0.13 -1.05 9.05 37.16 0.34 -0.71 16 4 C 0.17 1.61 2.93 -67.20 -0.20 1.42 16 5 H 0.12 1.48 7.25 -51.93 -0.38 1.10 16 6 N -0.73 -7.38 5.25 -57.96 -0.30 -7.68 16 7 C 0.71 10.45 8.53 -86.92 -0.74 9.70 16 8 O -0.57 -10.15 13.10 5.29 0.07 -10.08 16 9 N -0.64 -10.02 5.46 -15.51 -0.08 -10.10 16 10 C 0.28 5.59 8.11 -154.36 -1.25 4.34 16 11 C -0.29 -5.76 9.61 -39.83 -0.38 -6.15 16 12 C 0.05 1.02 11.44 -17.24 -0.20 0.83 16 13 N -0.32 -7.53 3.67 -62.56 -0.23 -7.76 16 14 C 0.26 6.60 6.26 -5.19 -0.03 6.57 16 15 C -0.53 -14.70 9.23 -34.44 -0.32 -15.01 16 16 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.90 -25.40 13.29 55.43 0.74 -24.66 16 19 Si 0.91 21.37 29.54 -169.99 -5.02 16.35 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 23 N -0.31 -7.13 12.42 31.44 0.39 -6.74 16 24 C -0.15 -1.25 4.45 -88.39 -0.39 -1.65 16 25 H 0.11 0.82 8.04 -51.92 -0.42 0.40 16 26 C -0.15 -1.26 6.64 -25.19 -0.17 -1.42 16 27 C 0.05 0.36 7.63 37.92 0.29 0.65 16 28 O -0.36 -3.33 9.95 -35.23 -0.35 -3.68 16 29 C 0.06 0.44 4.73 -25.37 -0.12 0.32 16 30 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.34 7.23 -51.93 -0.38 -0.04 16 33 H 0.06 0.28 7.65 -51.93 -0.40 -0.11 16 34 H 0.07 0.64 7.10 -51.93 -0.37 0.27 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.40 2.90 6.66 -40.82 -0.27 2.63 16 38 H 0.41 5.08 8.84 -40.82 -0.36 4.72 16 39 H 0.16 3.17 5.91 -52.48 -0.31 2.86 16 40 H 0.17 2.76 8.06 -52.49 -0.42 2.33 16 41 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 43 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 44 H 0.09 0.90 7.90 -51.93 -0.41 0.49 16 45 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 46 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 381.28 15.07 5.75 5.75 Total: -1.00 -33.17 381.28 -9.28 -42.45 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -7.06 Total: 6.91 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -3.18 Total: -0.76 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: 0.51 Total: -56.94 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -0.28 Total: -13.76 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.17 -9.28 -42.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246709153.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.641 kcal (2) G-P(sol) polarization free energy of solvation -33.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds