Wall clock time and date at job start Tue Mar 31 2020 19:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 112.83989 * 2 1 4 4 C 1.53656 * 113.53745 * 228.99708 * 2 1 3 5 5 H 1.09005 * 113.53402 * 155.20866 * 4 2 1 6 6 N 1.46502 * 113.59662 * 24.56841 * 4 2 1 7 7 C 1.34778 * 119.99865 * 157.45075 * 6 4 2 8 8 O 1.21587 * 119.99912 * 359.97438 * 7 6 4 9 9 N 1.34777 * 119.99925 * 179.97438 * 7 6 4 10 10 C 1.40191 * 119.99894 * 179.97438 * 9 7 6 11 11 C 1.40402 * 125.97360 * 0.02562 * 10 9 7 12 12 C 1.35247 * 107.87050 * 179.97438 * 11 10 9 13 13 N 1.34966 * 107.85343 * 359.97438 * 12 11 10 14 14 C 1.46501 * 125.97364 * 180.02562 * 13 12 11 15 15 C 1.50707 * 109.46915 * 124.99992 * 14 13 12 16 16 H 1.08000 * 120.00053 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99615 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00637 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99484 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47517 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46764 * 120.00110 * 19 17 15 22 22 H 1.48499 * 109.47217 * 239.99595 * 19 17 15 23 23 N 1.31211 * 125.97174 * 179.69261 * 10 9 7 24 24 C 1.53742 * 87.57385 * 269.88138 * 4 2 1 25 25 H 1.09009 * 116.81311 * 94.60262 * 24 4 2 26 26 C 1.54488 * 112.85909 * 231.77829 * 24 4 2 27 27 C 1.54447 * 104.13396 * 92.93518 * 26 24 4 28 28 O 1.44393 * 104.80740 * 335.86599 * 27 26 24 29 29 C 1.44256 * 105.39937 * 40.57975 * 28 27 26 30 30 H 1.08996 * 114.90145 * 88.68667 * 29 28 27 31 31 H 1.09005 * 109.47240 * 308.49839 * 1 2 3 32 32 H 1.09002 * 109.47150 * 68.49689 * 1 2 3 33 33 H 1.09006 * 109.47393 * 188.49568 * 1 2 3 34 34 H 1.09006 * 109.46877 * 171.49983 * 3 2 1 35 35 H 1.08999 * 109.47537 * 291.49693 * 3 2 1 36 36 H 1.08997 * 109.46993 * 51.50177 * 3 2 1 37 37 H 0.96999 * 120.00109 * 337.45862 * 6 4 2 38 38 H 0.96999 * 120.00049 * 0.02562 * 9 7 6 39 39 H 1.08003 * 126.06497 * 359.97438 * 11 10 9 40 40 H 1.07991 * 126.07360 * 179.97438 * 12 11 10 41 41 H 1.08993 * 109.47273 * 245.00160 * 14 13 12 42 42 H 1.09007 * 109.46997 * 5.00554 * 14 13 12 43 43 H 0.96998 * 119.99941 * 179.97438 * 18 17 15 44 44 H 1.08998 * 110.50187 * 334.26696 * 26 24 4 45 45 H 1.09009 * 110.61049 * 211.65080 * 26 24 4 46 46 H 1.08997 * 110.37334 * 217.03447 * 27 26 24 47 47 H 1.09001 * 110.37755 * 94.69809 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1238 1.4101 0.0000 4 6 2.1436 -0.9243 -1.0631 5 1 3.1492 -0.6321 -1.3658 6 7 1.2584 -1.1757 -2.2031 7 6 1.7761 -1.5621 -3.3859 8 8 2.9779 -1.7016 -3.5070 9 7 0.9617 -1.7939 -4.4345 10 6 1.5003 -2.1953 -5.6650 11 6 2.8620 -2.3942 -5.9438 12 6 2.9694 -2.7767 -7.2366 13 7 1.7261 -2.8202 -7.7599 14 6 1.3840 -3.1884 -9.1360 15 6 0.3805 -4.3127 -9.1205 16 1 0.0322 -4.7126 -8.1797 17 6 -0.0927 -4.8306 -10.3074 18 7 0.3311 -4.3433 -11.4530 19 14 -1.3370 -6.2238 -10.2881 20 1 -1.6507 -6.5880 -8.8831 21 1 -2.5792 -5.7874 -10.9751 22 1 -0.7708 -7.4030 -10.9911 23 7 0.8195 -2.4568 -6.7558 24 6 2.1205 -2.0435 -0.0093 25 1 1.2552 -2.7065 -0.0151 26 6 3.4883 -2.7430 0.1532 27 6 4.1718 -1.9721 1.3038 28 8 3.5434 -0.6721 1.3014 29 6 2.1432 -0.9239 1.0625 30 1 1.5488 -1.0985 1.9593 31 1 -0.3634 0.6397 0.8043 32 1 -0.3633 0.3767 -0.9562 33 1 -0.3634 -1.0164 0.1518 34 1 3.2016 1.3504 0.1519 35 1 1.9178 1.8912 -0.9561 36 1 1.6753 1.9932 0.8043 37 1 0.2997 -1.0639 -2.1066 38 1 0.0030 -1.6822 -4.3380 39 1 3.6787 -2.2647 -5.2490 40 1 3.8870 -3.0064 -7.7576 41 1 0.9557 -2.3262 -9.6470 42 1 2.2836 -3.5115 -9.6600 43 1 -0.0016 -4.7081 -12.2880 44 1 4.0721 -2.6576 -0.7633 45 1 3.3538 -3.7907 0.4226 46 1 5.2410 -1.8771 1.1143 47 1 3.9975 -2.4761 2.2545 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000246709153.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:36 Heat of formation + Delta-G solvation = 15.475475 kcal Electronic energy + Delta-G solvation = -28763.892435 eV Core-core repulsion = 24755.828430 eV Total energy + Delta-G solvation = -4008.064005 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.55101 -42.07371 -40.56571 -37.43651 -36.17253 -35.29457 -34.41318 -33.00076 -32.47284 -30.92555 -29.81730 -28.57591 -28.36016 -26.09400 -24.81543 -24.02572 -22.95793 -21.93727 -21.71188 -21.30673 -19.81471 -18.98546 -18.67945 -18.25834 -17.76797 -17.00289 -16.86658 -16.54292 -16.24846 -16.22048 -15.81075 -15.55404 -15.27355 -14.88450 -14.50242 -14.39525 -14.35538 -14.18683 -13.80111 -13.67289 -13.41949 -13.11329 -13.00689 -12.92267 -12.78731 -12.72866 -12.33723 -12.28396 -12.12769 -11.98195 -11.88872 -11.63043 -11.59425 -11.38075 -11.13070 -11.07326 -10.72044 -10.52202 -10.06486 -9.71552 -9.04931 -8.32472 -6.46617 1.07243 1.14405 1.37570 1.38890 1.52132 1.69976 2.12090 2.36403 2.39992 2.68905 2.99033 3.14116 3.18915 3.52346 3.61899 3.94801 3.97439 4.08590 4.18633 4.25536 4.28265 4.35346 4.39284 4.51575 4.69424 4.77740 4.79577 4.85296 4.86554 4.92297 4.95583 4.96644 4.99841 5.03457 5.08709 5.11053 5.14825 5.21050 5.38811 5.43975 5.55457 5.57711 5.76934 5.88467 5.94100 5.98169 6.29696 6.64350 6.76898 7.15397 7.23393 7.43956 8.75247 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022281 B = 0.002176 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.402602 B =12861.722275 C =12977.238493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.075 4.075 3 C -0.133 4.133 4 C 0.158 3.842 5 H 0.090 0.910 6 N -0.709 5.709 7 C 0.711 3.289 8 O -0.600 6.600 9 N -0.636 5.636 10 C 0.285 3.715 11 C -0.293 4.293 12 C 0.056 3.944 13 N -0.345 5.345 14 C 0.272 3.728 15 C -0.545 4.545 16 H 0.052 0.948 17 C 0.017 3.983 18 N -0.921 5.921 19 Si 0.973 3.027 20 H -0.274 1.274 21 H -0.273 1.273 22 H -0.270 1.270 23 N -0.346 5.346 24 C -0.151 4.151 25 H 0.127 0.873 26 C -0.151 4.151 27 C 0.048 3.952 28 O -0.378 6.378 29 C 0.063 3.937 30 H 0.118 0.882 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.071 0.929 37 H 0.413 0.587 38 H 0.420 0.580 39 H 0.165 0.835 40 H 0.200 0.800 41 H 0.021 0.979 42 H 0.058 0.942 43 H 0.272 0.728 44 H 0.058 0.942 45 H 0.087 0.913 46 H 0.094 0.906 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.543 7.372 28.364 29.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.076 4.076 3 C -0.191 4.191 4 C 0.052 3.948 5 H 0.108 0.892 6 N -0.366 5.366 7 C 0.411 3.589 8 O -0.478 6.478 9 N -0.288 5.288 10 C 0.029 3.971 11 C -0.324 4.324 12 C -0.093 4.093 13 N -0.127 5.127 14 C 0.154 3.846 15 C -0.584 4.584 16 H 0.071 0.929 17 C -0.183 4.183 18 N -0.560 5.560 19 Si 0.797 3.203 20 H -0.199 1.199 21 H -0.198 1.198 22 H -0.195 1.195 23 N -0.177 5.177 24 C -0.171 4.171 25 H 0.145 0.855 26 C -0.189 4.189 27 C -0.029 4.029 28 O -0.298 6.298 29 C 0.005 3.995 30 H 0.136 0.864 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.252 0.748 38 H 0.258 0.742 39 H 0.182 0.818 40 H 0.217 0.783 41 H 0.039 0.961 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.106 0.894 46 H 0.112 0.888 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.539 7.374 27.463 28.477 hybrid contribution -0.453 -0.717 -0.297 0.898 sum 1.086 6.658 27.166 27.991 Atomic orbital electron populations 1.21631 0.90131 1.03785 1.03666 1.22253 0.97450 0.94919 0.92979 1.21615 1.00916 0.94616 1.01922 1.22552 0.94105 0.95740 0.82389 0.89227 1.44926 1.11354 1.72152 1.08152 1.15857 0.84638 0.77981 0.80437 1.90831 1.14453 1.59099 1.83415 1.41387 1.10845 1.70225 1.06318 1.19081 0.92145 0.99374 0.86492 1.21668 0.96179 1.17776 0.96761 1.23140 0.90690 1.00516 0.94911 1.48822 1.03459 1.50142 1.10326 1.19339 0.97571 0.95365 0.72362 1.21425 1.25737 1.18115 0.93077 0.92949 1.25752 0.98386 0.99656 0.94501 1.70002 1.44723 1.43222 0.98061 0.85287 0.78446 0.78460 0.78131 1.19857 1.19834 1.19544 1.77242 1.16942 1.27206 0.96353 1.24637 0.99320 0.96545 0.96575 0.85527 1.22896 0.95758 1.00901 0.99305 1.23590 0.98347 0.82897 0.98022 1.89004 1.19399 1.28002 1.93375 1.24118 0.83934 0.95127 0.96341 0.86423 0.90022 0.91068 0.90572 0.92962 0.92918 0.90994 0.74799 0.74240 0.81757 0.78312 0.96068 0.92411 0.91851 0.92351 0.89447 0.88808 0.90379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 7.96 71.98 0.57 -0.40 16 2 C -0.07 -0.95 1.31 -51.77 -0.07 -1.02 16 3 C -0.13 -1.95 9.05 71.98 0.65 -1.30 16 4 C 0.16 2.88 2.93 45.46 0.13 3.01 16 5 H 0.09 2.28 7.25 -2.38 -0.02 2.26 16 6 N -0.71 -13.36 5.25 -455.55 -2.39 -15.75 16 7 C 0.71 20.48 8.53 179.05 1.53 22.01 16 8 O -0.60 -21.76 13.10 -3.99 -0.05 -21.81 16 9 N -0.64 -19.40 5.46 -321.23 -1.75 -21.15 16 10 C 0.28 11.57 8.11 133.31 1.08 12.65 16 11 C -0.29 -11.81 9.61 22.11 0.21 -11.60 16 12 C 0.06 2.26 11.44 83.52 0.96 3.22 16 13 N -0.35 -16.48 3.67 -351.83 -1.29 -17.77 16 14 C 0.27 14.27 6.26 85.63 0.54 14.81 16 15 C -0.55 -30.93 9.23 25.60 0.24 -30.70 16 16 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 17 C 0.02 0.96 5.46 84.65 0.46 1.42 16 18 N -0.92 -52.37 13.29 21.45 0.28 -52.09 16 19 Si 0.97 43.63 29.54 68.60 2.03 45.66 16 20 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 22 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 23 N -0.35 -16.27 12.42 -54.44 -0.68 -16.94 16 24 C -0.15 -2.20 4.45 -9.35 -0.04 -2.24 16 25 H 0.13 1.49 8.04 -2.38 -0.02 1.47 16 26 C -0.15 -2.44 6.64 31.59 0.21 -2.23 16 27 C 0.05 0.67 7.63 72.47 0.55 1.23 16 28 O -0.38 -6.68 9.95 -148.98 -1.48 -8.16 16 29 C 0.06 0.81 4.73 31.48 0.15 0.96 16 30 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.08 0.44 8.14 -2.38 -0.02 0.42 16 32 H 0.07 0.49 7.23 -2.39 -0.02 0.47 16 33 H 0.08 0.38 7.65 -2.38 -0.02 0.37 16 34 H 0.05 0.95 7.10 -2.38 -0.02 0.93 16 35 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.41 5.09 6.66 -92.71 -0.62 4.47 16 38 H 0.42 10.06 8.84 -92.71 -0.82 9.24 16 39 H 0.17 6.53 5.91 -2.91 -0.02 6.52 16 40 H 0.20 6.40 8.06 -2.92 -0.02 6.37 16 41 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.06 2.96 8.07 -2.38 -0.02 2.94 16 43 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 44 H 0.06 1.27 7.90 -2.39 -0.02 1.26 16 45 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 46 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -72.73 381.28 1.40 -71.33 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: -0.43 Total: 26.88 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: 7.17 Total: 9.81 kcal Atomic # 7 Polarization: -117.88 SS G_CDS: -5.83 Total: -123.70 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -1.54 Total: -29.97 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -72.73 1.40 -71.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246709153.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.805 kcal (2) G-P(sol) polarization free energy of solvation -72.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds