Wall clock time and date at job start Tue Mar 31 2020 19:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32093 * 119.85018 * 2 1 4 4 C 1.32607 * 119.99865 * 179.76985 * 3 2 1 5 5 O 1.35436 * 120.14265 * 180.25630 * 4 3 2 6 6 C 1.40217 * 119.71343 * 0.50716 * 4 3 2 7 7 C 1.47838 * 120.14564 * 179.76679 * 6 4 3 8 8 O 1.21552 * 120.00531 * 359.97438 * 7 6 4 9 9 N 1.34777 * 119.99740 * 179.97438 * 7 6 4 10 10 C 1.46503 * 120.00168 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47140 * 180.02562 * 10 9 7 12 12 C 1.53048 * 109.46079 * 295.02642 * 11 10 9 13 13 C 1.53191 * 109.31165 * 178.60386 * 12 11 10 14 14 N 1.46922 * 108.76916 * 54.65347 * 13 12 11 15 15 C 1.36936 * 120.62974 * 126.36046 * 14 13 12 16 16 H 1.08004 * 120.00211 * 331.85892 * 15 14 13 17 17 C 1.38814 * 120.00025 * 151.86369 * 15 14 13 18 18 N 1.31614 * 119.99715 * 343.06828 * 17 15 14 19 19 Si 1.86794 * 120.00045 * 163.07139 * 17 15 14 20 20 H 1.48503 * 109.47317 * 59.99801 * 19 17 15 21 21 H 1.48500 * 109.47236 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47441 * 299.99843 * 19 17 15 23 23 C 1.46923 * 118.74092 * 306.38769 * 14 13 12 24 24 C 1.53037 * 109.46051 * 174.97425 * 11 10 9 25 25 N 1.32986 * 119.70144 * 359.75113 * 6 4 3 26 26 C 1.31758 * 119.99490 * 359.97438 * 25 6 4 27 27 C 1.50696 * 119.85808 * 179.97438 * 26 25 6 28 28 H 1.09002 * 109.46885 * 269.71954 * 1 2 3 29 29 H 1.08999 * 109.47486 * 29.71503 * 1 2 3 30 30 H 1.08998 * 109.47483 * 149.72293 * 1 2 3 31 31 H 0.96702 * 113.99906 * 270.25893 * 5 4 3 32 32 H 0.97002 * 120.00268 * 0.02562 * 9 7 6 33 33 H 1.08999 * 109.46952 * 300.00089 * 10 9 7 34 34 H 1.08995 * 109.47056 * 60.00087 * 10 9 7 35 35 H 1.08999 * 109.46401 * 54.99647 * 11 10 9 36 36 H 1.09002 * 109.49592 * 298.56928 * 12 11 10 37 37 H 1.09000 * 109.49364 * 58.66281 * 12 11 10 38 38 H 1.09002 * 109.59628 * 294.86383 * 13 12 11 39 39 H 1.09004 * 109.70080 * 174.50795 * 13 12 11 40 40 H 0.97001 * 120.00181 * 179.97438 * 18 17 15 41 41 H 1.09005 * 109.58488 * 293.81793 * 23 14 13 42 42 H 1.08997 * 109.70833 * 173.46211 * 23 14 13 43 43 H 1.09004 * 109.49684 * 301.33505 * 24 11 10 44 44 H 1.09002 * 109.49711 * 61.40235 * 24 11 10 45 45 H 1.09003 * 109.47229 * 270.02333 * 27 26 25 46 46 H 1.09000 * 109.47381 * 30.01985 * 27 26 25 47 47 H 1.08999 * 109.47184 * 150.02153 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1645 1.1457 0.0000 4 6 3.4905 1.1491 0.0046 5 8 4.1676 2.3221 0.0099 6 6 4.1887 -0.0668 -0.0013 7 6 5.6671 -0.0741 -0.0014 8 8 6.2801 0.9755 0.0031 9 7 6.3352 -1.2447 -0.0066 10 6 7.8002 -1.2520 -0.0062 11 6 8.3029 -2.6970 -0.0133 12 6 7.8935 -3.3858 1.2907 13 6 8.3682 -4.8420 1.2651 14 7 9.8130 -4.8637 0.9993 15 6 10.6663 -5.5322 1.8361 16 1 10.4145 -5.6542 2.8792 17 6 11.8551 -6.0529 1.3436 18 7 12.0189 -6.2066 0.0468 19 14 13.2223 -6.5356 2.5214 20 1 12.7286 -7.5842 3.4498 21 1 14.3772 -7.0617 1.7503 22 1 13.6477 -5.3451 3.3006 23 6 10.3250 -4.1541 -0.1809 24 6 9.8281 -2.7055 -0.1393 25 7 3.5151 -1.2134 -0.0065 26 6 2.1975 -1.2033 -0.0055 27 6 1.4373 -2.5044 -0.0120 28 1 -0.3633 -0.0050 1.0277 29 1 -0.3634 0.8925 -0.5094 30 1 -0.3634 -0.8874 -0.5181 31 1 4.3638 2.6669 -0.8720 32 1 5.8460 -2.0823 -0.0106 33 1 8.1663 -0.7359 -0.8937 34 1 8.1658 -0.7441 0.8862 35 1 7.8658 -3.2295 -0.8580 36 1 8.3507 -2.8686 2.1343 37 1 6.8085 -3.3586 1.3913 38 1 7.8437 -5.3837 0.4779 39 1 8.1667 -5.3112 2.2281 40 1 12.8498 -6.5701 -0.2975 41 1 9.9601 -4.6396 -1.0860 42 1 11.4149 -4.1669 -0.1734 43 1 10.1202 -2.1942 -1.0565 44 1 10.2668 -2.1945 0.7177 45 1 1.2536 -2.8128 -1.0412 46 1 2.0225 -3.2698 0.4977 47 1 0.4857 -2.3718 0.5029 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000328936974.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:53 Heat of formation + Delta-G solvation = -17.174750 kcal Electronic energy + Delta-G solvation = -28613.244736 eV Core-core repulsion = 24603.764911 eV Total energy + Delta-G solvation = -4009.479825 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.90105 -39.56928 -38.09539 -37.65487 -35.14733 -34.89778 -33.70144 -32.78576 -30.82135 -29.80064 -29.41523 -28.06737 -26.71826 -24.39551 -23.90357 -23.16756 -22.20990 -21.13089 -20.72709 -19.24984 -19.04616 -18.63588 -17.77268 -16.70314 -16.52767 -15.72237 -15.29533 -15.12152 -14.89991 -14.65620 -14.13663 -13.99174 -13.67321 -13.60479 -13.50965 -13.47028 -13.36047 -13.15033 -12.78523 -12.45432 -12.36003 -12.32107 -12.09807 -12.05754 -11.87495 -11.34613 -11.30811 -10.97912 -10.70765 -10.50917 -10.45754 -10.22866 -10.21270 -9.90784 -9.57049 -9.52010 -9.38358 -9.30239 -8.97197 -8.45299 -6.65426 -5.77718 -3.20003 -0.08692 0.51257 2.43615 2.75812 3.07802 3.33668 3.39341 3.45064 3.46685 3.50073 3.76377 4.14088 4.38892 4.50964 4.64573 4.69171 4.98916 5.05158 5.10350 5.11218 5.13069 5.23048 5.39046 5.39203 5.42536 5.46602 5.61487 5.80421 5.87001 5.92207 6.05597 6.14339 6.33674 6.39455 6.48307 6.60829 6.61962 6.69550 6.77717 6.82778 6.99713 7.08874 7.17985 7.37710 7.48973 7.66891 7.80561 8.07302 8.46799 9.22999 9.86541 10.43395 11.30828 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022370 B = 0.002256 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.348582 B =12407.697888 C =13218.430242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.129 3.871 3 N -0.463 5.463 4 C 0.321 3.679 5 O -0.451 6.451 6 C 0.015 3.985 7 C 0.570 3.430 8 O -0.519 6.519 9 N -0.702 5.702 10 C 0.122 3.878 11 C -0.090 4.090 12 C -0.128 4.128 13 C 0.146 3.854 14 N -0.592 5.592 15 C -0.252 4.252 16 H 0.064 0.936 17 C 0.002 3.998 18 N -0.904 5.904 19 Si 0.902 3.098 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.284 1.284 23 C 0.172 3.828 24 C -0.133 4.133 25 N -0.394 5.394 26 C 0.068 3.932 27 C -0.103 4.103 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.408 0.592 32 H 0.410 0.590 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.048 0.952 38 H 0.016 0.984 39 H 0.052 0.948 40 H 0.254 0.746 41 H 0.017 0.983 42 H 0.088 0.912 43 H 0.051 0.949 44 H 0.058 0.942 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.903 11.333 -3.744 26.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.014 4.014 3 N -0.188 5.188 4 C 0.139 3.861 5 O -0.257 6.257 6 C -0.128 4.128 7 C 0.352 3.648 8 O -0.394 6.394 9 N -0.353 5.353 10 C -0.001 4.001 11 C -0.109 4.109 12 C -0.167 4.167 13 C 0.020 3.980 14 N -0.315 5.315 15 C -0.382 4.382 16 H 0.082 0.918 17 C -0.197 4.197 18 N -0.548 5.548 19 Si 0.732 3.268 20 H -0.209 1.209 21 H -0.217 1.217 22 H -0.210 1.210 23 C 0.046 3.954 24 C -0.172 4.172 25 N -0.113 5.113 26 C -0.076 4.076 27 C -0.160 4.160 28 H 0.108 0.892 29 H 0.103 0.897 30 H 0.107 0.893 31 H 0.268 0.732 32 H 0.246 0.754 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.034 0.966 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.035 0.965 42 H 0.106 0.894 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.104 0.896 46 H 0.105 0.895 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -23.156 12.037 -3.238 26.298 hybrid contribution 0.596 -0.438 0.104 0.747 sum -22.560 11.599 -3.134 25.560 Atomic orbital electron populations 1.20884 0.87012 1.04588 1.04118 1.22291 0.98504 0.87605 0.93044 1.67971 1.08282 1.30261 1.12299 1.19966 0.86800 0.86573 0.92729 1.84760 1.72675 1.34331 1.33953 1.22489 0.96303 0.89593 1.04456 1.17450 0.84596 0.84686 0.78028 1.90833 1.67749 1.31291 1.49538 1.45950 1.08214 1.08392 1.72794 1.21686 0.77595 0.98609 1.02196 1.21315 0.97915 0.92685 0.98957 1.22084 0.98582 0.99303 0.96757 1.20881 0.86358 0.92361 0.98443 1.44040 1.00315 1.58449 1.28705 1.19143 0.99882 1.28842 0.90310 0.91822 1.25040 1.00184 0.98727 0.95724 1.70016 1.25704 1.47909 1.11173 0.86374 0.81817 0.78332 0.80267 1.20916 1.21656 1.21036 1.20758 1.00262 0.85972 0.88407 1.22183 0.92861 1.01739 1.00456 1.68192 1.08537 1.27932 1.06598 1.22184 0.89960 0.97103 0.98377 1.20780 0.99316 0.92008 1.03918 0.89204 0.89651 0.89296 0.73210 0.75387 0.91461 0.91254 0.91215 0.92168 0.93380 0.96581 0.92898 0.93603 0.96453 0.89397 0.93039 0.92346 0.89569 0.89490 0.89737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.46 9.36 36.01 0.34 -0.12 16 2 C 0.13 1.08 6.79 -82.29 -0.56 0.53 16 3 N -0.46 -5.12 10.44 -9.01 -0.09 -5.22 16 4 C 0.32 3.94 7.78 -16.47 -0.13 3.81 16 5 O -0.45 -5.37 11.64 -39.86 -0.46 -5.84 16 6 C 0.01 0.19 6.77 -82.70 -0.56 -0.37 16 7 C 0.57 8.19 7.80 -12.33 -0.10 8.09 16 8 O -0.52 -8.67 15.17 -16.53 -0.25 -8.92 16 9 N -0.70 -9.44 5.26 -61.25 -0.32 -9.76 16 10 C 0.12 1.76 5.06 -4.04 -0.02 1.74 16 11 C -0.09 -1.43 2.19 -90.58 -0.20 -1.63 16 12 C -0.13 -2.15 5.25 -26.61 -0.14 -2.29 16 13 C 0.15 3.00 6.52 -3.71 -0.02 2.98 16 14 N -0.59 -14.70 2.99 -172.32 -0.52 -15.21 16 15 C -0.25 -6.91 9.58 -15.06 -0.14 -7.06 16 16 H 0.06 1.72 7.89 -52.48 -0.41 1.30 16 17 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 18 N -0.90 -26.15 11.19 55.49 0.62 -25.52 16 19 Si 0.90 21.73 29.59 -169.99 -5.03 16.70 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 C 0.17 4.03 5.30 -3.71 -0.02 4.01 16 24 C -0.13 -2.45 5.36 -26.61 -0.14 -2.59 16 25 N -0.39 -4.40 9.62 -5.80 -0.06 -4.45 16 26 C 0.07 0.58 6.78 -82.44 -0.56 0.02 16 27 C -0.10 -0.50 9.36 36.00 0.34 -0.16 16 28 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.17 6.69 -51.93 -0.35 -0.18 16 31 H 0.41 3.04 9.06 45.56 0.41 3.45 16 32 H 0.41 5.08 7.00 -40.82 -0.29 4.79 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.05 0.69 7.15 -51.93 -0.37 0.32 16 38 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.05 1.08 7.93 -51.93 -0.41 0.66 16 40 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.09 2.32 6.06 -51.93 -0.31 2.01 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 46 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.08 0.21 6.69 -51.93 -0.35 -0.14 16 LS Contribution 380.53 15.07 5.73 5.73 Total: -1.00 -33.93 380.53 -8.67 -42.59 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -6.29 Total: 2.97 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: -2.00 Total: 6.92 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: -0.37 Total: -60.17 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.71 Total: -14.75 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.93 -8.67 -42.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328936974.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.420 kcal (2) G-P(sol) polarization free energy of solvation -33.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds