Wall clock time and date at job start Tue Mar 31 2020 19:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32093 * 119.85018 * 2 1 4 4 C 1.32607 * 119.99865 * 179.76985 * 3 2 1 5 5 O 1.35436 * 120.14265 * 180.25630 * 4 3 2 6 6 C 1.40217 * 119.71343 * 0.50716 * 4 3 2 7 7 C 1.47838 * 120.14564 * 179.76679 * 6 4 3 8 8 O 1.21552 * 120.00531 * 359.97438 * 7 6 4 9 9 N 1.34777 * 119.99740 * 179.97438 * 7 6 4 10 10 C 1.46503 * 120.00168 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47140 * 180.02562 * 10 9 7 12 12 C 1.53048 * 109.46079 * 295.02642 * 11 10 9 13 13 C 1.53191 * 109.31165 * 178.60386 * 12 11 10 14 14 N 1.46922 * 108.76916 * 54.65347 * 13 12 11 15 15 C 1.36936 * 120.62974 * 126.36046 * 14 13 12 16 16 H 1.08004 * 120.00211 * 331.85892 * 15 14 13 17 17 C 1.38814 * 120.00025 * 151.86369 * 15 14 13 18 18 N 1.31614 * 119.99715 * 343.06828 * 17 15 14 19 19 Si 1.86794 * 120.00045 * 163.07139 * 17 15 14 20 20 H 1.48503 * 109.47317 * 59.99801 * 19 17 15 21 21 H 1.48500 * 109.47236 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47441 * 299.99843 * 19 17 15 23 23 C 1.46923 * 118.74092 * 306.38769 * 14 13 12 24 24 C 1.53037 * 109.46051 * 174.97425 * 11 10 9 25 25 N 1.32986 * 119.70144 * 359.75113 * 6 4 3 26 26 C 1.31758 * 119.99490 * 359.97438 * 25 6 4 27 27 C 1.50696 * 119.85808 * 179.97438 * 26 25 6 28 28 H 1.09002 * 109.46885 * 269.71954 * 1 2 3 29 29 H 1.08999 * 109.47486 * 29.71503 * 1 2 3 30 30 H 1.08998 * 109.47483 * 149.72293 * 1 2 3 31 31 H 0.96702 * 113.99906 * 270.25893 * 5 4 3 32 32 H 0.97002 * 120.00268 * 0.02562 * 9 7 6 33 33 H 1.08999 * 109.46952 * 300.00089 * 10 9 7 34 34 H 1.08995 * 109.47056 * 60.00087 * 10 9 7 35 35 H 1.08999 * 109.46401 * 54.99647 * 11 10 9 36 36 H 1.09002 * 109.49592 * 298.56928 * 12 11 10 37 37 H 1.09000 * 109.49364 * 58.66281 * 12 11 10 38 38 H 1.09002 * 109.59628 * 294.86383 * 13 12 11 39 39 H 1.09004 * 109.70080 * 174.50795 * 13 12 11 40 40 H 0.97001 * 120.00181 * 179.97438 * 18 17 15 41 41 H 1.09005 * 109.58488 * 293.81793 * 23 14 13 42 42 H 1.08997 * 109.70833 * 173.46211 * 23 14 13 43 43 H 1.09004 * 109.49684 * 301.33505 * 24 11 10 44 44 H 1.09002 * 109.49711 * 61.40235 * 24 11 10 45 45 H 1.09003 * 109.47229 * 270.02333 * 27 26 25 46 46 H 1.09000 * 109.47381 * 30.01985 * 27 26 25 47 47 H 1.08999 * 109.47184 * 150.02153 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1645 1.1457 0.0000 4 6 3.4905 1.1491 0.0046 5 8 4.1676 2.3221 0.0099 6 6 4.1887 -0.0668 -0.0013 7 6 5.6671 -0.0741 -0.0014 8 8 6.2801 0.9755 0.0031 9 7 6.3352 -1.2447 -0.0066 10 6 7.8002 -1.2520 -0.0062 11 6 8.3029 -2.6970 -0.0133 12 6 7.8935 -3.3858 1.2907 13 6 8.3682 -4.8420 1.2651 14 7 9.8130 -4.8637 0.9993 15 6 10.6663 -5.5322 1.8361 16 1 10.4145 -5.6542 2.8792 17 6 11.8551 -6.0529 1.3436 18 7 12.0189 -6.2066 0.0468 19 14 13.2223 -6.5356 2.5214 20 1 12.7286 -7.5842 3.4498 21 1 14.3772 -7.0617 1.7503 22 1 13.6477 -5.3451 3.3006 23 6 10.3250 -4.1541 -0.1809 24 6 9.8281 -2.7055 -0.1393 25 7 3.5151 -1.2134 -0.0065 26 6 2.1975 -1.2033 -0.0055 27 6 1.4373 -2.5044 -0.0120 28 1 -0.3633 -0.0050 1.0277 29 1 -0.3634 0.8925 -0.5094 30 1 -0.3634 -0.8874 -0.5181 31 1 4.3638 2.6669 -0.8720 32 1 5.8460 -2.0823 -0.0106 33 1 8.1663 -0.7359 -0.8937 34 1 8.1658 -0.7441 0.8862 35 1 7.8658 -3.2295 -0.8580 36 1 8.3507 -2.8686 2.1343 37 1 6.8085 -3.3586 1.3913 38 1 7.8437 -5.3837 0.4779 39 1 8.1667 -5.3112 2.2281 40 1 12.8498 -6.5701 -0.2975 41 1 9.9601 -4.6396 -1.0860 42 1 11.4149 -4.1669 -0.1734 43 1 10.1202 -2.1942 -1.0565 44 1 10.2668 -2.1945 0.7177 45 1 1.2536 -2.8128 -1.0412 46 1 2.0225 -3.2698 0.4977 47 1 0.4857 -2.3718 0.5029 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000328936974.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:52 Heat of formation + Delta-G solvation = -43.285011 kcal Electronic energy + Delta-G solvation = -28614.376962 eV Core-core repulsion = 24603.764911 eV Total energy + Delta-G solvation = -4010.612051 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.67244 -40.67353 -39.37422 -38.73029 -36.42768 -35.85133 -34.52359 -34.23094 -32.53548 -31.42386 -30.08750 -28.88914 -28.09787 -25.91153 -24.70034 -24.15927 -23.74682 -22.63556 -21.81428 -20.74478 -19.95089 -19.44270 -18.87607 -18.51319 -17.33835 -16.91789 -16.78524 -16.30223 -15.86783 -15.76051 -15.47745 -15.30546 -15.01728 -14.88073 -14.74899 -14.22228 -14.05074 -13.90648 -13.88892 -13.83288 -13.50360 -13.27453 -13.00352 -12.98509 -12.86376 -12.81250 -12.59260 -12.55272 -12.28478 -12.03800 -12.02815 -11.84971 -11.65488 -11.52089 -11.17746 -11.11795 -10.52650 -10.27450 -10.22241 -9.90751 -8.66303 -7.86751 -5.31661 -0.87157 -0.22965 1.46448 1.49038 1.51846 1.55602 1.83391 2.24283 2.49241 2.51737 2.75435 3.08760 3.27510 3.45314 3.70802 3.73794 3.81958 3.91483 3.95726 4.01646 4.07610 4.49624 4.53210 4.66278 4.71172 4.72680 4.75779 4.76829 4.78804 4.83046 4.89490 4.93327 5.00983 5.12355 5.14143 5.26118 5.27879 5.31328 5.41586 5.42067 5.54952 5.66182 5.79065 5.90226 6.26772 6.40530 6.45434 6.53062 7.01242 7.16440 7.88516 8.39503 9.19313 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022370 B = 0.002256 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.348582 B =12407.697888 C =13218.430242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.136 3.864 3 N -0.482 5.482 4 C 0.309 3.691 5 O -0.467 6.467 6 C -0.011 4.011 7 C 0.570 3.430 8 O -0.550 6.550 9 N -0.696 5.696 10 C 0.135 3.865 11 C -0.078 4.078 12 C -0.115 4.115 13 C 0.142 3.858 14 N -0.612 5.612 15 C -0.263 4.263 16 H 0.064 0.936 17 C -0.051 4.051 18 N -0.934 5.934 19 Si 0.965 3.035 20 H -0.275 1.275 21 H -0.294 1.294 22 H -0.280 1.280 23 C 0.177 3.823 24 C -0.121 4.121 25 N -0.406 5.406 26 C 0.069 3.931 27 C -0.102 4.102 28 H 0.107 0.893 29 H 0.086 0.914 30 H 0.120 0.880 31 H 0.421 0.579 32 H 0.416 0.584 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.050 0.950 37 H 0.078 0.922 38 H 0.018 0.982 39 H 0.051 0.949 40 H 0.250 0.750 41 H -0.001 1.001 42 H 0.052 0.948 43 H 0.072 0.928 44 H 0.051 0.949 45 H 0.103 0.897 46 H 0.081 0.919 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.866 11.305 -3.388 29.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.008 4.008 3 N -0.207 5.207 4 C 0.129 3.871 5 O -0.276 6.276 6 C -0.152 4.152 7 C 0.354 3.646 8 O -0.427 6.427 9 N -0.347 5.347 10 C 0.011 3.989 11 C -0.097 4.097 12 C -0.154 4.154 13 C 0.016 3.984 14 N -0.335 5.335 15 C -0.393 4.393 16 H 0.081 0.919 17 C -0.246 4.246 18 N -0.580 5.580 19 Si 0.793 3.207 20 H -0.201 1.201 21 H -0.220 1.220 22 H -0.206 1.206 23 C 0.051 3.949 24 C -0.161 4.161 25 N -0.125 5.125 26 C -0.077 4.077 27 C -0.159 4.159 28 H 0.125 0.875 29 H 0.105 0.895 30 H 0.138 0.862 31 H 0.283 0.717 32 H 0.254 0.746 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.096 0.904 38 H 0.036 0.964 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.017 0.983 42 H 0.071 0.929 43 H 0.090 0.910 44 H 0.069 0.931 45 H 0.122 0.878 46 H 0.100 0.900 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -26.126 12.023 -2.879 28.904 hybrid contribution 1.320 -0.482 -0.021 1.406 sum -24.806 11.541 -2.901 27.513 Atomic orbital electron populations 1.21111 0.83671 1.06206 1.05562 1.23098 1.00502 0.86835 0.90339 1.68070 1.07678 1.31642 1.13326 1.20049 0.87405 0.86415 0.93254 1.84701 1.72974 1.34551 1.35405 1.22146 0.95309 0.90423 1.07295 1.17699 0.85488 0.84224 0.77146 1.90804 1.68678 1.32243 1.51010 1.45816 1.07632 1.08627 1.72660 1.21414 0.78332 0.97053 1.02061 1.21145 0.95952 0.93780 0.98778 1.21926 1.00235 0.96427 0.96797 1.21042 0.84118 0.94891 0.98305 1.44320 1.01980 1.58643 1.28605 1.19461 1.00651 1.28418 0.90811 0.91858 1.25774 1.02288 0.99404 0.97149 1.70166 1.25898 1.49174 1.12761 0.85377 0.78880 0.78078 0.78334 1.20084 1.21975 1.20642 1.20573 0.98203 0.88679 0.87400 1.21979 0.94714 0.98164 1.01232 1.68182 1.09902 1.27254 1.07165 1.22904 0.89276 0.98882 0.96632 1.20976 0.99940 0.89650 1.05361 0.87513 0.89543 0.86191 0.71680 0.74632 0.91028 0.92100 0.90492 0.93113 0.90351 0.96362 0.93057 0.94109 0.98260 0.92946 0.90993 0.93051 0.87843 0.89977 0.86705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.49 9.36 71.24 0.67 0.18 16 2 C 0.14 1.95 6.79 42.64 0.29 2.24 16 3 N -0.48 -10.11 10.44 -295.24 -3.08 -13.19 16 4 C 0.31 7.53 7.78 85.06 0.66 8.19 16 5 O -0.47 -11.39 11.64 -66.43 -0.77 -12.16 16 6 C -0.01 -0.28 6.77 41.99 0.28 0.01 16 7 C 0.57 16.23 7.80 86.78 0.68 16.91 16 8 O -0.55 -18.53 15.17 17.02 0.26 -18.27 16 9 N -0.70 -17.90 5.26 -465.98 -2.45 -20.36 16 10 C 0.13 3.73 5.06 86.38 0.44 4.17 16 11 C -0.08 -2.37 2.19 -10.77 -0.02 -2.40 16 12 C -0.11 -3.69 5.25 30.67 0.16 -3.53 16 13 C 0.14 5.74 6.52 86.36 0.56 6.30 16 14 N -0.61 -30.73 2.99 -699.09 -2.09 -32.82 16 15 C -0.26 -14.61 9.58 84.03 0.81 -13.81 16 16 H 0.06 3.44 7.89 -2.91 -0.02 3.42 16 17 C -0.05 -2.86 4.92 84.86 0.42 -2.44 16 18 N -0.93 -55.50 11.19 21.65 0.24 -55.26 16 19 Si 0.97 45.30 29.59 68.60 2.03 47.33 16 20 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 21 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 22 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 23 C 0.18 8.49 5.30 86.36 0.46 8.95 16 24 C -0.12 -4.45 5.36 30.67 0.16 -4.28 16 25 N -0.41 -8.46 9.62 -172.26 -1.66 -10.12 16 26 C 0.07 1.00 6.78 42.69 0.29 1.29 16 27 C -0.10 -0.59 9.36 71.23 0.67 0.08 16 28 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.12 -0.17 6.69 -2.39 -0.02 -0.19 16 31 H 0.42 6.63 9.06 -74.06 -0.67 5.96 16 32 H 0.42 9.58 7.00 -92.71 -0.65 8.93 16 33 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.08 2.07 7.15 -2.39 -0.02 2.05 16 38 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.05 2.06 7.93 -2.38 -0.02 2.04 16 40 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 41 H 0.00 -0.03 8.14 -2.38 -0.02 -0.05 16 42 H 0.05 2.87 6.06 -2.39 -0.01 2.86 16 43 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 44 H 0.05 1.95 8.14 -2.39 -0.02 1.94 16 45 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 46 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.11 -0.02 6.69 -2.39 -0.02 -0.03 16 Total: -1.00 -75.80 380.53 -1.32 -77.12 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -0.31 Total: 15.86 kcal Atomic # 6 Polarization: 15.35 SS G_CDS: 6.52 Total: 21.87 kcal Atomic # 7 Polarization: -122.70 SS G_CDS: -9.04 Total: -131.74 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -0.52 Total: -30.44 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -75.80 -1.32 -77.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328936974.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.834 kcal (2) G-P(sol) polarization free energy of solvation -75.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds