Wall clock time and date at job start Tue Mar 31 2020 19:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.33609 * 126.83421 * 2 1 4 4 N 1.20656 * 113.13208 * 180.02562 * 3 2 1 5 5 C 1.30041 * 112.29230 * 0.02562 * 4 3 2 6 6 C 1.50706 * 127.32254 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.47294 * 90.02316 * 6 5 4 8 8 O 1.21282 * 120.00025 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00035 * 180.02562 * 7 6 5 10 10 C 1.46497 * 119.99801 * 359.97438 * 9 7 6 11 11 C 1.50706 * 109.47140 * 90.00533 * 10 9 7 12 12 H 1.07999 * 119.99704 * 359.97438 * 11 10 9 13 13 C 1.37872 * 119.99937 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00248 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99728 * 179.97438 * 13 11 10 16 16 H 1.48509 * 109.47031 * 60.00413 * 15 13 11 17 17 H 1.48504 * 109.47324 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.47609 * 300.00587 * 15 13 11 19 19 C 1.46496 * 119.99846 * 179.97438 * 9 7 6 20 20 C 1.52999 * 109.47296 * 89.99734 * 19 9 7 21 21 C 1.53001 * 109.47419 * 179.97438 * 20 19 9 22 22 N 1.46904 * 109.47269 * 179.97438 * 21 20 19 23 23 C 1.46899 * 110.99918 * 170.00198 * 22 21 20 24 24 C 1.46897 * 110.99769 * 293.95868 * 22 21 20 25 25 C 1.37317 * 126.82267 * 180.37075 * 2 1 3 26 26 C 1.43199 * 128.56204 * 359.97438 * 25 2 1 27 27 N 3.58834 * 92.79664 * 180.35952 * 2 1 3 28 28 H 1.09005 * 109.47121 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47159 * 119.97484 * 1 2 3 30 30 H 1.08993 * 109.47650 * 239.98342 * 1 2 3 31 31 H 1.09001 * 109.46953 * 210.01758 * 6 5 4 32 32 H 1.09000 * 109.47318 * 330.01356 * 6 5 4 33 33 H 1.09000 * 109.47065 * 210.00008 * 10 9 7 34 34 H 1.09002 * 109.47641 * 330.00367 * 10 9 7 35 35 H 0.97002 * 119.99745 * 180.02562 * 14 13 11 36 36 H 1.09002 * 109.47248 * 209.99764 * 19 9 7 37 37 H 1.09000 * 109.47481 * 330.00016 * 19 9 7 38 38 H 1.08993 * 109.47224 * 300.00302 * 20 19 9 39 39 H 1.09004 * 109.47330 * 59.99663 * 20 19 9 40 40 H 1.08993 * 109.47591 * 300.00594 * 21 20 19 41 41 H 1.08998 * 109.46590 * 60.00186 * 21 20 19 42 42 H 1.08998 * 109.47005 * 60.00452 * 23 22 21 43 43 H 1.08995 * 109.46843 * 179.97438 * 23 22 21 44 44 H 1.08996 * 109.47139 * 300.00508 * 23 22 21 45 45 H 1.08999 * 109.47294 * 60.00271 * 24 22 21 46 46 H 1.09008 * 109.46827 * 179.97438 * 24 22 21 47 47 H 1.08997 * 109.47510 * 299.99327 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3080 1.0694 0.0000 4 7 3.4802 0.7836 -0.0005 5 6 3.6745 -0.5023 -0.0014 6 6 4.9960 -1.2267 -0.0018 7 6 5.4359 -1.4698 1.4189 8 8 4.7447 -1.0916 2.3410 9 7 6.5980 -2.1066 1.6649 10 6 7.4332 -2.5630 0.5512 11 6 8.4022 -1.4734 0.1706 12 1 8.3962 -0.5347 0.7047 13 6 9.2964 -1.6749 -0.8594 14 7 9.3033 -2.8178 -1.5101 15 14 10.4971 -0.3240 -1.3315 16 1 11.3589 0.0016 -0.1668 17 1 11.3446 -0.7870 -2.4596 18 1 9.7428 0.8872 -1.7430 19 6 7.0259 -2.3424 3.0460 20 6 6.4819 -3.6896 3.5256 21 6 6.9293 -3.9362 4.9677 22 7 6.4064 -5.2294 5.4284 23 6 7.0048 -5.6112 6.7145 24 6 4.9404 -5.2030 5.5169 25 6 2.3300 -1.0992 -0.0071 26 6 1.9687 -2.4848 -0.0156 27 7 1.6821 -3.5840 -0.0225 28 1 -0.3634 1.0277 0.0005 29 1 -0.3634 -0.5135 -0.8902 30 1 -0.3634 -0.5140 0.8897 31 1 4.8869 -2.1813 -0.5166 32 1 5.7426 -0.6205 -0.5148 33 1 7.9866 -3.4523 0.8527 34 1 6.8003 -2.8013 -0.3038 35 1 9.9327 -2.9596 -2.2344 36 1 8.1149 -2.3532 3.0921 37 1 6.6430 -1.5474 3.6858 38 1 5.3930 -3.6789 3.4794 39 1 6.8648 -4.4847 2.8857 40 1 8.0182 -3.9470 5.0136 41 1 6.5467 -3.1412 5.6077 42 1 6.7719 -4.8536 7.4628 43 1 6.5999 -6.5719 7.0326 44 1 8.0860 -5.6911 6.6028 45 1 4.5209 -4.9864 4.5345 46 1 4.5796 -6.1728 5.8598 47 1 4.6327 -4.4307 6.2218 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354373167.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:46 Heat of formation + Delta-G solvation = 52.233411 kcal Electronic energy + Delta-G solvation = -28830.227145 eV Core-core repulsion = 24823.757084 eV Total energy + Delta-G solvation = -4006.470061 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.92440 -39.32091 -37.60791 -36.81182 -35.32914 -34.28928 -33.67891 -32.93551 -31.67162 -29.27053 -28.27978 -27.61408 -27.42771 -25.77676 -24.50519 -23.05377 -22.68414 -20.83031 -20.46041 -18.85420 -18.42758 -17.78060 -16.68927 -16.52774 -16.24562 -15.76732 -15.39511 -15.09175 -14.74668 -14.65182 -14.42364 -14.12879 -13.82804 -13.78569 -13.58434 -13.35565 -13.06921 -12.84854 -12.73755 -12.63244 -12.40033 -12.38601 -12.23621 -11.88798 -11.79107 -11.68003 -11.42708 -11.31241 -11.22462 -10.94122 -10.90166 -10.76806 -10.30771 -10.16014 -10.04000 -9.80934 -9.42493 -9.15163 -8.60089 -8.35231 -7.81978 -6.22677 -4.31251 0.93569 1.83650 2.47362 2.77970 3.22733 3.22944 3.28102 3.30899 3.32427 3.65489 3.83143 4.05612 4.17541 4.30532 4.40522 4.82002 5.04016 5.05360 5.07799 5.10802 5.13817 5.23581 5.26614 5.29520 5.36879 5.49888 5.55678 5.62930 5.64324 5.68292 5.77898 5.78588 5.83371 5.91009 5.99761 6.09066 6.14747 6.44871 6.58437 6.71297 7.03129 7.05544 7.11093 7.42094 7.44306 7.71454 7.98769 8.21249 8.24519 8.71047 8.88232 9.37501 10.83821 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.005849 B = 0.004917 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4785.698552 B = 5693.648546 C = 9445.437496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.036 3.964 3 O 0.105 5.895 4 N -0.337 5.337 5 C 0.103 3.897 6 C -0.068 4.068 7 C 0.524 3.476 8 O -0.568 6.568 9 N -0.589 5.589 10 C 0.235 3.765 11 C -0.543 4.543 12 H 0.062 0.938 13 C 0.068 3.932 14 N -0.889 5.889 15 Si 0.896 3.104 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.124 3.876 20 C -0.129 4.129 21 C 0.059 3.941 22 N -0.548 5.548 23 C 0.025 3.975 24 C 0.022 3.978 25 C -0.149 4.149 26 C 0.295 3.705 27 N -0.405 5.405 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.115 0.885 32 H 0.133 0.867 33 H 0.040 0.960 34 H 0.038 0.962 35 H 0.267 0.733 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.033 0.967 42 H 0.022 0.978 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.899 1.409 6.667 14.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.031 4.031 3 O 0.045 5.955 4 N -0.042 5.042 5 C -0.062 4.062 6 C -0.109 4.109 7 C 0.311 3.689 8 O -0.449 6.449 9 N -0.319 5.319 10 C 0.115 3.885 11 C -0.582 4.582 12 H 0.080 0.920 13 C -0.136 4.136 14 N -0.527 5.527 15 Si 0.724 3.276 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.200 1.200 19 C 0.000 4.000 20 C -0.168 4.168 21 C -0.069 4.069 22 N -0.271 5.271 23 C -0.123 4.123 24 C -0.126 4.126 25 C -0.156 4.156 26 C -0.021 4.021 27 N -0.081 5.081 28 H 0.112 0.888 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.133 0.867 32 H 0.151 0.849 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.051 0.949 42 H 0.041 0.959 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.091 0.909 46 H 0.083 0.917 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -12.636 0.531 6.619 14.274 hybrid contribution 0.605 0.869 0.215 1.080 sum -12.031 1.400 6.834 13.907 Atomic orbital electron populations 1.20509 0.83043 1.05472 1.04726 1.24577 0.95920 0.85393 0.97222 1.84647 1.11275 1.32242 1.67358 1.73671 0.95038 1.16215 1.19254 1.24185 0.94685 0.88611 0.98727 1.20144 0.91058 1.01929 0.97724 1.19923 0.81400 0.77828 0.89774 1.90623 1.54956 1.53148 1.46175 1.48130 1.20331 1.55436 1.07967 1.19508 0.89810 0.95888 0.83287 1.21446 1.18194 1.01066 1.17476 0.91996 1.24932 0.97138 0.95749 0.95785 1.69911 1.37025 1.23441 1.22290 0.86578 0.80931 0.81971 0.78164 1.20094 1.21114 1.19969 1.21215 0.99809 0.95974 0.83039 1.21947 1.01301 0.98445 0.95134 1.22072 1.00096 0.88730 0.95996 1.61965 1.06310 1.30727 1.28143 1.22366 1.00355 1.00006 0.89586 1.22421 0.87768 1.00578 1.01813 1.17349 0.93111 0.87453 1.17711 1.23830 0.93983 0.90859 0.93390 1.81278 1.07192 1.10271 1.09380 0.88845 0.88526 0.88551 0.86730 0.84899 0.94180 0.94443 0.92357 0.90152 0.91127 0.91968 0.90798 0.90549 0.94853 0.95918 0.91621 0.91321 0.90935 0.91744 0.95795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.30 36.01 0.37 -0.11 16 2 C 0.04 0.40 7.55 -34.64 -0.26 0.14 16 3 O 0.11 1.39 11.07 18.36 0.20 1.60 16 4 N -0.34 -5.55 12.01 34.79 0.42 -5.13 16 5 C 0.10 1.72 6.08 -79.75 -0.48 1.23 16 6 C -0.07 -1.24 4.85 -29.03 -0.14 -1.38 16 7 C 0.52 10.68 7.67 -10.99 -0.08 10.60 16 8 O -0.57 -12.52 15.61 5.56 0.09 -12.43 16 9 N -0.59 -12.02 2.46 -175.06 -0.43 -12.45 16 10 C 0.23 5.35 4.97 -5.19 -0.03 5.32 16 11 C -0.54 -13.62 9.28 -34.44 -0.32 -13.94 16 12 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 13 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 14 N -0.89 -23.89 13.29 55.43 0.74 -23.15 16 15 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 16 16 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 C 0.12 2.23 5.41 -4.04 -0.02 2.21 16 20 C -0.13 -2.10 5.46 -26.73 -0.15 -2.24 16 21 C 0.06 0.82 4.96 -3.82 -0.02 0.80 16 22 N -0.55 -7.31 5.02 -251.27 -1.26 -8.57 16 23 C 0.03 0.27 9.57 60.06 0.57 0.84 16 24 C 0.02 0.28 9.32 60.06 0.56 0.84 16 25 C -0.15 -2.10 6.30 -104.71 -0.66 -2.76 16 26 C 0.29 4.38 15.76 -22.48 -0.35 4.02 16 27 N -0.40 -6.53 18.54 41.83 0.78 -5.76 16 28 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.11 1.94 7.40 -51.93 -0.38 1.55 16 32 H 0.13 2.50 8.00 -51.93 -0.42 2.08 16 33 H 0.04 0.97 8.07 -51.93 -0.42 0.55 16 34 H 0.04 0.87 6.44 -51.93 -0.33 0.54 16 35 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 36 H 0.08 1.43 8.07 -51.93 -0.42 1.01 16 37 H 0.07 1.29 7.42 -51.93 -0.39 0.91 16 38 H 0.06 1.08 6.55 -51.93 -0.34 0.74 16 39 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.08 1.00 8.06 -51.93 -0.42 0.59 16 41 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 42 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 44 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 45 H 0.07 0.99 6.47 -51.93 -0.34 0.65 16 46 H 0.06 0.70 8.12 -51.92 -0.42 0.27 16 47 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 LS Contribution 405.72 15.07 6.11 6.11 Total: -1.00 -30.56 405.72 -6.71 -37.26 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -7.22 Total: 0.16 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: -1.11 Total: 7.22 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: 0.24 Total: -55.06 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.29 Total: -10.83 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -30.56 -6.71 -37.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354373167.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.497 kcal (2) G-P(sol) polarization free energy of solvation -30.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds