Wall clock time and date at job start Tue Mar 31 2020 19:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32112 * 120.05529 * 2 1 4 4 C 1.32109 * 120.06977 * 180.02562 * 3 2 1 5 5 C 1.38780 * 120.19018 * 0.02562 * 4 3 2 6 6 N 1.31769 * 120.12439 * 359.97438 * 5 4 3 7 7 C 1.33037 * 119.92380 * 359.67221 * 6 5 4 8 8 C 1.48151 * 120.09496 * 180.29535 * 7 6 5 9 9 O 1.21522 * 119.99863 * 255.64855 * 8 7 6 10 10 N 1.34773 * 119.99877 * 75.64985 * 8 7 6 11 11 C 1.46501 * 120.00220 * 5.11583 * 10 8 7 12 12 C 1.50700 * 109.46961 * 85.47541 * 11 10 8 13 13 H 1.07996 * 120.00079 * 0.02562 * 12 11 10 14 14 C 1.37872 * 119.99684 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00260 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 120.00294 * 359.97438 * 14 12 11 17 17 H 1.48496 * 109.47146 * 89.99975 * 16 14 12 18 18 H 1.48505 * 109.47206 * 210.00104 * 16 14 12 19 19 H 1.48504 * 109.46748 * 330.00047 * 16 14 12 20 20 C 1.46503 * 119.99909 * 185.11652 * 10 8 7 21 21 C 1.53000 * 109.47029 * 89.99925 * 20 10 8 22 22 N 1.46906 * 109.46931 * 180.02562 * 21 20 10 23 23 C 1.47021 * 110.99717 * 293.63082 * 22 21 20 24 24 C 1.53093 * 109.25663 * 177.60594 * 23 22 21 25 25 O 1.43021 * 109.25710 * 56.85221 * 24 23 22 26 26 C 1.43012 * 113.74061 * 301.32946 * 25 24 23 27 27 C 1.47008 * 110.99984 * 170.00140 * 22 21 20 28 28 H 1.09006 * 109.47363 * 85.23652 * 1 2 3 29 29 H 1.09006 * 109.46786 * 205.22924 * 1 2 3 30 30 H 1.08999 * 109.47637 * 325.23116 * 1 2 3 31 31 H 1.07998 * 119.90425 * 179.97438 * 4 3 2 32 32 H 1.07998 * 119.93522 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.47026 * 205.47629 * 11 10 8 34 34 H 1.09000 * 109.46812 * 325.47433 * 11 10 8 35 35 H 0.96994 * 120.00643 * 180.02562 * 15 14 12 36 36 H 1.09005 * 109.47396 * 210.00137 * 20 10 8 37 37 H 1.09002 * 109.46926 * 329.99894 * 20 10 8 38 38 H 1.08998 * 109.47001 * 299.99478 * 21 20 10 39 39 H 1.08993 * 109.47460 * 60.00167 * 21 20 10 40 40 H 1.08992 * 109.50726 * 297.54448 * 23 22 21 41 41 H 1.09000 * 109.50235 * 57.67492 * 23 22 21 42 42 H 1.08997 * 109.51495 * 296.92087 * 24 23 22 43 43 H 1.09004 * 109.54173 * 176.80464 * 24 23 22 44 44 H 1.09001 * 109.50052 * 298.73669 * 26 25 24 45 45 H 1.08996 * 109.54209 * 178.62606 * 26 25 24 46 46 H 1.09001 * 109.50821 * 302.32206 * 27 22 21 47 47 H 1.09007 * 109.50959 * 62.41298 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1687 1.1435 0.0000 4 6 3.4898 1.1438 -0.0005 5 6 4.1880 -0.0556 -0.0016 6 7 3.5357 -1.2005 -0.0016 7 6 2.2054 -1.2064 0.0060 8 6 1.4682 -2.4914 0.0127 9 8 0.9337 -2.8906 -1.0031 10 7 1.3903 -3.2178 1.1453 11 6 1.9369 -2.6855 2.3959 12 6 0.9041 -1.8161 3.0657 13 1 -0.0629 -1.6747 2.6060 14 6 1.1937 -1.2014 4.2654 15 7 0.2923 -0.4432 4.8502 16 14 2.8660 -1.4467 5.0608 17 1 3.8008 -0.3970 4.5818 18 1 2.7307 -1.3529 6.5367 19 1 3.3959 -2.7853 4.6964 20 6 0.7590 -4.5396 1.1258 21 6 1.8141 -5.6043 0.8190 22 7 1.1809 -6.9297 0.7989 23 6 0.6961 -7.3023 2.1359 24 6 -0.0076 -8.6597 2.0576 25 8 0.8960 -9.6291 1.5198 26 6 1.3875 -9.2983 0.2181 27 6 2.1052 -7.9472 0.2777 28 1 -0.3634 0.0853 -1.0242 29 1 -0.3633 -0.9297 0.4381 30 1 -0.3634 0.8441 0.5860 31 1 4.0280 2.0801 -0.0009 32 1 5.2679 -0.0505 -0.0024 33 1 2.2014 -3.5107 3.0571 34 1 2.8262 -2.0930 2.1806 35 1 0.4961 -0.0104 5.6940 36 1 0.3102 -4.7424 2.0982 37 1 -0.0138 -4.5619 0.3573 38 1 2.2627 -5.4015 -0.1535 39 1 2.5868 -5.5820 1.5874 40 1 1.5393 -7.3685 2.8234 41 1 -0.0061 -6.5483 2.4915 42 1 -0.8821 -8.5798 1.4120 43 1 -0.3190 -8.9670 3.0560 44 1 0.5534 -9.2368 -0.4809 45 1 2.0852 -10.0668 -0.1143 46 1 2.4316 -7.6641 -0.7230 47 1 2.9713 -8.0232 0.9352 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597020195.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:08 Heat of formation + Delta-G solvation = -15.728369 kcal Electronic energy + Delta-G solvation = -29895.305032 eV Core-core repulsion = 25885.887926 eV Total energy + Delta-G solvation = -4009.417105 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.00617 -39.68724 -38.88651 -36.26108 -35.01802 -34.25574 -32.73379 -32.50423 -31.30389 -30.04663 -28.04149 -27.77548 -26.39199 -24.79538 -24.09757 -22.70147 -22.61127 -22.09662 -20.41938 -19.30592 -17.63591 -17.19082 -16.91079 -16.66590 -16.22599 -16.02864 -15.79417 -15.26192 -15.11439 -14.82053 -14.58243 -14.54195 -14.26308 -13.92162 -13.51594 -13.30476 -12.98836 -12.59645 -12.48195 -12.41804 -12.38220 -12.16570 -11.91741 -11.85618 -11.55954 -11.45666 -11.34021 -11.05433 -10.89918 -10.83348 -10.70464 -10.49755 -10.33600 -9.85954 -9.77102 -9.67052 -8.86507 -8.82099 -8.72383 -8.45225 -7.96661 -6.30377 -4.32405 0.94196 1.38301 2.88100 3.09320 3.16982 3.19110 3.30701 3.72468 3.86663 3.97892 4.18238 4.34548 4.53956 4.74526 4.78525 4.90060 4.93081 4.97376 5.00914 5.05732 5.17550 5.30459 5.38365 5.43154 5.46425 5.47123 5.53975 5.58678 5.68865 5.72544 5.83209 5.87486 5.97586 6.08671 6.11773 6.26085 6.28211 6.37429 6.57615 6.65140 6.89758 6.90072 7.03432 7.14669 7.32667 7.46629 7.86052 7.99551 8.25174 8.55981 8.74304 9.28587 10.81627 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011350 B = 0.003999 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.360799 B = 6999.924647 C = 8287.024536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.140 3.860 3 N -0.438 5.438 4 C 0.061 3.939 5 C 0.034 3.966 6 N -0.414 5.414 7 C 0.069 3.931 8 C 0.589 3.411 9 O -0.546 6.546 10 N -0.575 5.575 11 C 0.208 3.792 12 C -0.543 4.543 13 H 0.082 0.918 14 C 0.082 3.918 15 N -0.884 5.884 16 Si 0.864 3.136 17 H -0.275 1.275 18 H -0.281 1.281 19 H -0.265 1.265 20 C 0.124 3.876 21 C 0.043 3.957 22 N -0.532 5.532 23 C 0.011 3.989 24 C 0.065 3.935 25 O -0.389 6.389 26 C 0.065 3.935 27 C 0.018 3.982 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.169 0.831 32 H 0.170 0.830 33 H 0.036 0.964 34 H 0.029 0.971 35 H 0.267 0.733 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.038 0.962 40 H 0.044 0.956 41 H 0.094 0.906 42 H 0.060 0.940 43 H 0.097 0.903 44 H 0.060 0.940 45 H 0.095 0.905 46 H 0.085 0.915 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.668 -8.069 -7.392 11.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.000 4.000 3 N -0.154 5.154 4 C -0.100 4.100 5 C -0.127 4.127 6 N -0.131 5.131 7 C -0.074 4.074 8 C 0.373 3.627 9 O -0.424 6.424 10 N -0.304 5.304 11 C 0.087 3.913 12 C -0.581 4.581 13 H 0.100 0.900 14 C -0.122 4.122 15 N -0.521 5.521 16 Si 0.691 3.309 17 H -0.200 1.200 18 H -0.206 1.206 19 H -0.189 1.189 20 C 0.001 3.999 21 C -0.086 4.086 22 N -0.258 5.258 23 C -0.117 4.117 24 C -0.012 4.012 25 O -0.308 6.308 26 C -0.012 4.012 27 C -0.110 4.110 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.186 0.814 32 H 0.187 0.813 33 H 0.054 0.946 34 H 0.047 0.953 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.108 0.892 38 H 0.096 0.904 39 H 0.056 0.944 40 H 0.062 0.938 41 H 0.112 0.888 42 H 0.079 0.921 43 H 0.116 0.884 44 H 0.078 0.922 45 H 0.113 0.887 46 H 0.104 0.896 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 3.968 -8.344 -7.941 12.183 hybrid contribution 1.884 0.483 1.256 2.315 sum 5.852 -7.862 -6.685 11.864 Atomic orbital electron populations 1.20737 0.87207 1.05047 1.02727 1.22085 0.98508 0.87712 0.91683 1.68328 1.08755 1.28650 1.09637 1.23865 0.90961 0.99715 0.95480 1.23661 1.01621 0.88696 0.98756 1.68337 1.07327 1.30021 1.07379 1.21750 0.90966 0.95358 0.99337 1.17536 0.79489 0.82118 0.83515 1.90747 1.47864 1.70616 1.33142 1.47755 1.56945 1.16251 1.09458 1.19884 0.95125 0.95193 0.81106 1.21324 1.01361 1.29078 1.06378 0.89969 1.24796 0.96515 0.94378 0.96550 1.69863 1.33952 1.30566 1.17721 0.87027 0.85050 0.79414 0.79429 1.20023 1.20610 1.18920 1.21302 0.94937 0.80305 1.03404 1.22507 0.96437 0.87827 1.01779 1.62129 1.38096 1.01967 1.23585 1.22905 1.00388 0.98378 0.90069 1.22682 0.91884 0.87188 0.99476 1.87961 1.63660 1.46340 1.32800 1.22644 0.98193 0.95272 0.85079 1.22770 0.94449 0.92647 1.01135 0.90212 0.89712 0.89473 0.81381 0.81305 0.94622 0.95325 0.92283 0.89869 0.89238 0.90353 0.94377 0.93803 0.88763 0.92130 0.88445 0.92204 0.88670 0.89617 0.94050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.81 9.90 36.01 0.36 -1.46 16 2 C 0.14 2.75 6.82 -82.04 -0.56 2.19 16 3 N -0.44 -7.97 10.42 -8.95 -0.09 -8.06 16 4 C 0.06 0.90 11.23 -17.23 -0.19 0.71 16 5 C 0.03 0.51 11.22 -17.38 -0.20 0.32 16 6 N -0.41 -7.79 9.79 -9.61 -0.09 -7.88 16 7 C 0.07 1.39 4.95 -82.84 -0.41 0.98 16 8 C 0.59 12.33 5.66 -12.19 -0.07 12.26 16 9 O -0.55 -12.03 16.66 5.35 0.09 -11.94 16 10 N -0.57 -11.63 2.47 -176.05 -0.43 -12.07 16 11 C 0.21 4.64 4.05 -5.19 -0.02 4.61 16 12 C -0.54 -13.91 9.91 -34.44 -0.34 -14.26 16 13 H 0.08 2.30 7.73 -52.49 -0.41 1.89 16 14 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 15 N -0.88 -25.10 13.96 55.43 0.77 -24.32 16 16 Si 0.86 20.00 27.47 -169.99 -4.67 15.33 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.26 -5.85 6.54 56.52 0.37 -5.48 16 20 C 0.12 2.15 5.36 -4.04 -0.02 2.13 16 21 C 0.04 0.66 5.28 -3.82 -0.02 0.64 16 22 N -0.53 -7.14 4.73 -234.31 -1.11 -8.24 16 23 C 0.01 0.13 5.44 -3.71 -0.02 0.11 16 24 C 0.06 0.71 7.01 37.21 0.26 0.97 16 25 O -0.39 -4.77 10.83 -35.23 -0.38 -5.15 16 26 C 0.07 0.67 7.01 37.21 0.26 0.94 16 27 C 0.02 0.21 5.64 -3.71 -0.02 0.19 16 28 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.08 1.68 6.56 -51.93 -0.34 1.34 16 30 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 31 H 0.17 1.73 8.06 -52.49 -0.42 1.31 16 32 H 0.17 1.78 8.06 -52.49 -0.42 1.36 16 33 H 0.04 0.78 7.10 -51.93 -0.37 0.41 16 34 H 0.03 0.67 5.90 -51.93 -0.31 0.36 16 35 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.08 1.41 6.45 -51.93 -0.33 1.07 16 37 H 0.09 1.60 7.36 -51.93 -0.38 1.22 16 38 H 0.08 1.26 8.04 -51.93 -0.42 0.85 16 39 H 0.04 0.60 8.12 -51.93 -0.42 0.18 16 40 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 1.16 6.38 -51.93 -0.33 0.83 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.09 0.92 8.09 -51.93 -0.42 0.50 16 47 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 383.29 15.07 5.78 5.78 Total: -1.00 -31.71 383.29 -8.36 -40.07 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -7.12 Total: 4.07 kcal Atomic # 6 Polarization: 13.51 SS G_CDS: -1.09 Total: 12.42 kcal Atomic # 7 Polarization: -59.62 SS G_CDS: -0.96 Total: -60.58 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.29 Total: -17.09 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -4.67 Total: 15.33 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.71 -8.36 -40.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597020195.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.339 kcal (2) G-P(sol) polarization free energy of solvation -31.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds