Wall clock time and date at job start Tue Mar 31 2020 19:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32112 * 120.05529 * 2 1 4 4 C 1.32109 * 120.06977 * 180.02562 * 3 2 1 5 5 C 1.38780 * 120.19018 * 0.02562 * 4 3 2 6 6 N 1.31769 * 120.12439 * 359.97438 * 5 4 3 7 7 C 1.33037 * 119.92380 * 359.67221 * 6 5 4 8 8 C 1.48151 * 120.09496 * 180.29535 * 7 6 5 9 9 O 1.21522 * 119.99863 * 255.64855 * 8 7 6 10 10 N 1.34773 * 119.99877 * 75.64985 * 8 7 6 11 11 C 1.46501 * 120.00220 * 5.11583 * 10 8 7 12 12 C 1.50700 * 109.46961 * 85.47541 * 11 10 8 13 13 H 1.07996 * 120.00079 * 0.02562 * 12 11 10 14 14 C 1.37872 * 119.99684 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00260 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 120.00294 * 359.97438 * 14 12 11 17 17 H 1.48496 * 109.47146 * 89.99975 * 16 14 12 18 18 H 1.48505 * 109.47206 * 210.00104 * 16 14 12 19 19 H 1.48504 * 109.46748 * 330.00047 * 16 14 12 20 20 C 1.46503 * 119.99909 * 185.11652 * 10 8 7 21 21 C 1.53000 * 109.47029 * 89.99925 * 20 10 8 22 22 N 1.46906 * 109.46931 * 180.02562 * 21 20 10 23 23 C 1.47021 * 110.99717 * 293.63082 * 22 21 20 24 24 C 1.53093 * 109.25663 * 177.60594 * 23 22 21 25 25 O 1.43021 * 109.25710 * 56.85221 * 24 23 22 26 26 C 1.43012 * 113.74061 * 301.32946 * 25 24 23 27 27 C 1.47008 * 110.99984 * 170.00140 * 22 21 20 28 28 H 1.09006 * 109.47363 * 85.23652 * 1 2 3 29 29 H 1.09006 * 109.46786 * 205.22924 * 1 2 3 30 30 H 1.08999 * 109.47637 * 325.23116 * 1 2 3 31 31 H 1.07998 * 119.90425 * 179.97438 * 4 3 2 32 32 H 1.07998 * 119.93522 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.47026 * 205.47629 * 11 10 8 34 34 H 1.09000 * 109.46812 * 325.47433 * 11 10 8 35 35 H 0.96994 * 120.00643 * 180.02562 * 15 14 12 36 36 H 1.09005 * 109.47396 * 210.00137 * 20 10 8 37 37 H 1.09002 * 109.46926 * 329.99894 * 20 10 8 38 38 H 1.08998 * 109.47001 * 299.99478 * 21 20 10 39 39 H 1.08993 * 109.47460 * 60.00167 * 21 20 10 40 40 H 1.08992 * 109.50726 * 297.54448 * 23 22 21 41 41 H 1.09000 * 109.50235 * 57.67492 * 23 22 21 42 42 H 1.08997 * 109.51495 * 296.92087 * 24 23 22 43 43 H 1.09004 * 109.54173 * 176.80464 * 24 23 22 44 44 H 1.09001 * 109.50052 * 298.73669 * 26 25 24 45 45 H 1.08996 * 109.54209 * 178.62606 * 26 25 24 46 46 H 1.09001 * 109.50821 * 302.32206 * 27 22 21 47 47 H 1.09007 * 109.50959 * 62.41298 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1687 1.1435 0.0000 4 6 3.4898 1.1438 -0.0005 5 6 4.1880 -0.0556 -0.0016 6 7 3.5357 -1.2005 -0.0016 7 6 2.2054 -1.2064 0.0060 8 6 1.4682 -2.4914 0.0127 9 8 0.9337 -2.8906 -1.0031 10 7 1.3903 -3.2178 1.1453 11 6 1.9369 -2.6855 2.3959 12 6 0.9041 -1.8161 3.0657 13 1 -0.0629 -1.6747 2.6060 14 6 1.1937 -1.2014 4.2654 15 7 0.2923 -0.4432 4.8502 16 14 2.8660 -1.4467 5.0608 17 1 3.8008 -0.3970 4.5818 18 1 2.7307 -1.3529 6.5367 19 1 3.3959 -2.7853 4.6964 20 6 0.7590 -4.5396 1.1258 21 6 1.8141 -5.6043 0.8190 22 7 1.1809 -6.9297 0.7989 23 6 0.6961 -7.3023 2.1359 24 6 -0.0076 -8.6597 2.0576 25 8 0.8960 -9.6291 1.5198 26 6 1.3875 -9.2983 0.2181 27 6 2.1052 -7.9472 0.2777 28 1 -0.3634 0.0853 -1.0242 29 1 -0.3633 -0.9297 0.4381 30 1 -0.3634 0.8441 0.5860 31 1 4.0280 2.0801 -0.0009 32 1 5.2679 -0.0505 -0.0024 33 1 2.2014 -3.5107 3.0571 34 1 2.8262 -2.0930 2.1806 35 1 0.4961 -0.0104 5.6940 36 1 0.3102 -4.7424 2.0982 37 1 -0.0138 -4.5619 0.3573 38 1 2.2627 -5.4015 -0.1535 39 1 2.5868 -5.5820 1.5874 40 1 1.5393 -7.3685 2.8234 41 1 -0.0061 -6.5483 2.4915 42 1 -0.8821 -8.5798 1.4120 43 1 -0.3190 -8.9670 3.0560 44 1 0.5534 -9.2368 -0.4809 45 1 2.0852 -10.0668 -0.1143 46 1 2.4316 -7.6641 -0.7230 47 1 2.9713 -8.0232 0.9352 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597020195.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:07 Heat of formation + Delta-G solvation = -39.556075 kcal Electronic energy + Delta-G solvation = -29896.338279 eV Core-core repulsion = 25885.887926 eV Total energy + Delta-G solvation = -4010.450352 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.38788 -40.81857 -40.25647 -37.55127 -36.48450 -35.61262 -34.62097 -33.92821 -32.22086 -31.43503 -29.74050 -29.16845 -27.61162 -26.11795 -25.03638 -24.55030 -23.98567 -23.34227 -21.39794 -20.80873 -19.26970 -18.83960 -18.53398 -17.95638 -17.36020 -17.16268 -17.01337 -16.39693 -16.32375 -16.02029 -15.98773 -15.89902 -15.63988 -15.26423 -14.84283 -14.72221 -14.52163 -14.22168 -13.92808 -13.82304 -13.76300 -13.55272 -13.34200 -13.19160 -12.98438 -12.70621 -12.64371 -12.51376 -12.33677 -12.20932 -12.16398 -11.89834 -11.74045 -11.47733 -11.38967 -10.85796 -10.71979 -10.19601 -10.10508 -9.69320 -9.45556 -8.35460 -6.41729 -0.38615 0.05561 1.27202 1.30329 1.32095 1.38478 1.83728 2.25116 2.61045 2.72188 2.94174 2.97831 3.04323 3.17096 3.44997 3.59706 3.78405 3.88478 3.96371 4.03684 4.09010 4.18817 4.23952 4.30667 4.34168 4.37442 4.40870 4.50493 4.56032 4.59488 4.63494 4.68768 4.70097 4.74318 4.80919 4.88496 4.92945 4.97335 5.00673 5.32112 5.35478 5.46443 5.82686 5.89398 6.06295 6.16209 6.16629 6.34816 6.63008 6.67889 6.94964 7.22989 8.79670 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011350 B = 0.003999 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.360799 B = 6999.924647 C = 8287.024536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.115 3.885 3 N -0.457 5.457 4 C 0.072 3.928 5 C 0.044 3.956 6 N -0.435 5.435 7 C 0.036 3.964 8 C 0.588 3.412 9 O -0.567 6.567 10 N -0.577 5.577 11 C 0.222 3.778 12 C -0.536 4.536 13 H 0.044 0.956 14 C 0.031 3.969 15 N -0.930 5.930 16 Si 0.922 3.078 17 H -0.269 1.269 18 H -0.279 1.279 19 H -0.245 1.245 20 C 0.124 3.876 21 C 0.059 3.941 22 N -0.539 5.539 23 C 0.010 3.990 24 C 0.067 3.933 25 O -0.403 6.403 26 C 0.066 3.934 27 C 0.017 3.983 28 H 0.098 0.902 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.220 0.780 32 H 0.221 0.779 33 H 0.045 0.955 34 H 0.028 0.972 35 H 0.268 0.732 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.035 0.965 40 H 0.038 0.962 41 H 0.090 0.910 42 H 0.064 0.936 43 H 0.115 0.885 44 H 0.063 0.937 45 H 0.119 0.881 46 H 0.093 0.907 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.450 -8.466 -7.531 13.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.023 4.023 3 N -0.173 5.173 4 C -0.090 4.090 5 C -0.119 4.119 6 N -0.151 5.151 7 C -0.104 4.104 8 C 0.373 3.627 9 O -0.446 6.446 10 N -0.306 5.306 11 C 0.100 3.900 12 C -0.574 4.574 13 H 0.063 0.937 14 C -0.169 4.169 15 N -0.569 5.569 16 Si 0.746 3.254 17 H -0.194 1.194 18 H -0.204 1.204 19 H -0.169 1.169 20 C 0.002 3.998 21 C -0.070 4.070 22 N -0.265 5.265 23 C -0.118 4.118 24 C -0.010 4.010 25 O -0.322 6.322 26 C -0.011 4.011 27 C -0.111 4.111 28 H 0.116 0.884 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.237 0.763 32 H 0.237 0.763 33 H 0.063 0.937 34 H 0.046 0.954 35 H 0.078 0.922 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.053 0.947 40 H 0.056 0.944 41 H 0.108 0.892 42 H 0.082 0.918 43 H 0.133 0.867 44 H 0.081 0.919 45 H 0.137 0.863 46 H 0.112 0.888 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 6.709 -8.796 -8.094 13.708 hybrid contribution 1.052 0.701 1.224 1.760 sum 7.761 -8.095 -6.870 13.152 Atomic orbital electron populations 1.20631 0.87570 1.03337 1.03530 1.22113 0.98771 0.88290 0.93095 1.68365 1.10663 1.27895 1.10372 1.24795 0.89882 1.01945 0.92402 1.24583 1.03803 0.87583 0.95958 1.68342 1.06550 1.32069 1.08152 1.21584 0.91938 0.94823 1.02048 1.17777 0.79179 0.82473 0.83227 1.90708 1.48824 1.71342 1.33733 1.47771 1.56954 1.17154 1.08766 1.19601 0.93918 0.94772 0.81664 1.21403 1.00609 1.29203 1.06221 0.93736 1.25551 1.00128 0.94081 0.97145 1.70003 1.36258 1.32182 1.18409 0.86084 0.80570 0.80344 0.78401 1.19424 1.20400 1.16870 1.21382 0.95393 0.79896 1.03156 1.22229 0.95389 0.88364 1.00982 1.62131 1.38485 1.01548 1.24294 1.22947 1.00195 0.99292 0.89386 1.22745 0.91543 0.86086 1.00599 1.87946 1.63886 1.46708 1.33629 1.22781 0.98699 0.95110 0.84500 1.22864 0.94150 0.92738 1.01316 0.88392 0.92326 0.89883 0.76311 0.76292 0.93653 0.95359 0.92250 0.89739 0.90196 0.91256 0.94697 0.94366 0.89163 0.91770 0.86692 0.91878 0.86281 0.88845 0.94314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.56 9.90 71.24 0.71 -2.86 16 2 C 0.12 4.57 6.82 42.80 0.29 4.86 16 3 N -0.46 -16.04 10.42 -182.23 -1.90 -17.94 16 4 C 0.07 1.88 11.23 84.78 0.95 2.83 16 5 C 0.04 1.15 11.22 84.83 0.95 2.10 16 6 N -0.43 -15.62 9.79 -184.33 -1.81 -17.43 16 7 C 0.04 1.47 4.95 41.87 0.21 1.68 16 8 C 0.59 25.29 5.66 86.88 0.49 25.78 16 9 O -0.57 -25.86 16.66 -3.79 -0.06 -25.92 16 10 N -0.58 -23.90 2.47 -829.20 -2.05 -25.94 16 11 C 0.22 9.90 4.05 85.63 0.35 10.24 16 12 C -0.54 -28.13 9.91 25.60 0.25 -27.87 16 13 H 0.04 2.63 7.73 -2.91 -0.02 2.61 16 14 C 0.03 1.67 5.47 84.65 0.46 2.13 16 15 N -0.93 -54.00 13.96 21.45 0.30 -53.71 16 16 Si 0.92 40.40 27.47 68.60 1.88 42.28 16 17 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 18 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 19 H -0.25 -9.89 6.54 99.48 0.65 -9.24 16 20 C 0.12 4.43 5.36 86.38 0.46 4.89 16 21 C 0.06 1.82 5.28 86.30 0.46 2.27 16 22 N -0.54 -14.17 4.73 -895.21 -4.23 -18.40 16 23 C 0.01 0.24 5.44 86.31 0.47 0.71 16 24 C 0.07 1.38 7.01 72.01 0.50 1.89 16 25 O -0.40 -9.18 10.83 -148.98 -1.61 -10.79 16 26 C 0.07 1.24 7.01 72.02 0.50 1.75 16 27 C 0.02 0.38 5.64 86.32 0.49 0.86 16 28 H 0.10 3.24 8.14 -2.38 -0.02 3.22 16 29 H 0.06 2.51 6.56 -2.38 -0.02 2.49 16 30 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 31 H 0.22 3.29 8.06 -2.91 -0.02 3.27 16 32 H 0.22 3.37 8.06 -2.91 -0.02 3.35 16 33 H 0.05 1.94 7.10 -2.39 -0.02 1.92 16 34 H 0.03 1.29 5.90 -2.39 -0.01 1.27 16 35 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 36 H 0.08 2.94 6.45 -2.38 -0.02 2.92 16 37 H 0.08 2.99 7.36 -2.39 -0.02 2.97 16 38 H 0.07 2.24 8.04 -2.39 -0.02 2.23 16 39 H 0.03 1.08 8.12 -2.39 -0.02 1.06 16 40 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.09 2.22 6.38 -2.39 -0.02 2.21 16 42 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.09 1.88 8.09 -2.39 -0.02 1.86 16 47 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 Total: -1.00 -70.79 383.29 -1.01 -71.80 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: 0.92 Total: 24.78 kcal Atomic # 6 Polarization: 23.72 SS G_CDS: 7.55 Total: 31.27 kcal Atomic # 7 Polarization: -123.74 SS G_CDS: -9.68 Total: -133.42 kcal Atomic # 8 Polarization: -35.03 SS G_CDS: -1.68 Total: -36.71 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 1.88 Total: 42.28 kcal Total: -70.79 -1.01 -71.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597020195.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.246 kcal (2) G-P(sol) polarization free energy of solvation -70.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds